paramList TestTubeSegmentationFramework::loadPreset(QString preset)
{
std::string path = getParametersDir().toStdString();
paramList parameters = initParameters(path);
setParameter(parameters, "parameters", preset.toStdString());
loadParameterPreset(parameters, path);
return parameters;
}
TEST_F(ClinicalTests, PhantomAccUS) {
std::string name = "Phantom-Acc-US";
setParameter(parameters, "parameters", name);
if(!dataExists(name)) {
SUCCEED();
return;
}
loadParameterPreset(parameters, PARAMETERS_DIR);
result = runClinicalData(parameters, name);
EXPECT_GT(1.5, result.averageDistanceFromCenterline);
EXPECT_LT(75.0, result.percentageExtractedCenterlines);
EXPECT_LT(0.7, result.precision);
EXPECT_LT(0.7, result.recall);
EXPECT_GT(200, result.incorrectCenterpoints);
}
void TestTubeSegmentationFramework::testParameters()
{
std::string path = getParametersDir().toStdString();
{
INFO("Could not find parameter file: "+path);
REQUIRE(QFile::exists(qstring_cast(path)));
}
{
INFO("Inititalizing parameters with default values failed.");
REQUIRE_NOTHROW(initParameters(path));
}
paramList defaultParameters = initParameters(path);
{
INFO("No default string parameters found.");
REQUIRE(!defaultParameters.strings.empty());
}
{
INFO("No default bool parameters found.");
REQUIRE(!defaultParameters.bools.empty());
}
{
INFO("No default numeric parameters found.");
REQUIRE(!defaultParameters.numerics.empty());
}
{
INFO("Gpu not validated as device.");
REQUIRE(defaultParameters.strings["device"].validate("gpu"));
}
{
INFO("250 not a valid gvf-iterations value.");
REQUIRE(defaultParameters.numerics["gvf-iterations"].validate(250));
}
{
INFO("Set parameter parameter to Lung-Airways-CT failed.");
REQUIRE_NOTHROW(setParameter(defaultParameters, "parameters", "Lung-Airways-CT"));
}
{
INFO("Load presets failed.");
REQUIRE_NOTHROW(loadParameterPreset(defaultParameters, path));
}
}
TEST_F(ClinicalTests, NeuroVesselsUSA) {
std::string name = "Neuro-Vessels-USA";
setParameter(parameters, "parameters", name);
if(!dataExists(name)) {
SUCCEED();
return;
}
loadParameterPreset(parameters, PARAMETERS_DIR);
try {
result = runClinicalData(parameters, name);
} catch(SIPL::SIPLException e) {
// Out of memory on GPU
// Try to run cropped version instead
std::cout << "Exception occurred. Trying cropped volume instead." << std::endl;
setParameter(parameters, "cropping", "no");
result = runClinicalData(parameters, name+"-cropped");
}
EXPECT_GT(1.5, result.averageDistanceFromCenterline);
EXPECT_LT(75.0, result.percentageExtractedCenterlines);
EXPECT_LT(0.7, result.precision);
EXPECT_LT(0.7, result.recall);
EXPECT_GT(200, result.incorrectCenterpoints);
}
virtual void SetUp() {
parameters = initParameters(PARAMETERS_DIR);
setParameter(parameters, "parameters", "Synthetic-Vascusynth");
setParameter(parameters, "centerline-method", "ridge");
loadParameterPreset(parameters, PARAMETERS_DIR);
};
