int main(int argc, char** argv) {
char *infile;
infile=argv[1];
char *outfile;
outfile=argv[2];
if(argc!=3) {
printf("Usage: ./convert2gadgetformat2 <infile> <outfile>\n");
return 0;
}
/* load snapshot file */
io_header header;
particle_data * P;
int nTot;
nTot = load_snapshot(infile, &header, &P);
/* output information about the simulation */
printf(">> Output from Header \n");
printf("Boxsize of Simulation: %g\n", header.BoxSize);
printf("Number of gas particles: %i\n", header.npart[0]);
printf("Number of high-res dm particles: %i\n", header.npart[1]);
printf("Number of low-res dm particles: %i\n", header.npart[5]);
printf("Number of star particles: %i\n", header.npart[4]);
/* write reduced snapshot file */
write_snapshot2(outfile, &header, P);
return 0;
}
int load_init_snapshot(void) {
if (!umxfile)
return 0;
if (load_snapshot(umxfile) == -1)
return -1;
fclose(umxfile);
io_print_backlog();
return 0;
}
/* Here we load a snapshot file. It can be distributed
* onto several files (for files>1).
* The particles are brought back into the order
* implied by their ID's.
* A unit conversion routine is called to do unit
* conversion, and to evaluate the gas temperature.
*/
int main(int argc, char **argv)
{
char path[200], input_fname[200], basename[200];
int type, snapshot_number, files;
sprintf(path, "/home/tczhang/desktop/C");
sprintf(basename, "snapshot");
snapshot_number = 6; /* number of snapshot */
files = 1; /* number of files per snapshot */
sprintf(input_fname, "%s/%s_%03d", path, basename, snapshot_number);
load_snapshot(input_fname, files);
reordering(); /* call this routine only if your ID's are set properly */
unit_conversion(); /* optional stuff */
do_what_you_want();
}
/* Here we load one block of a snapshot file. It can be distributed
* onto several files (for files>1). It then gets output as an array file.
*/
int main(int argc, char **argv)
{
char basename[200];
int type, files;
int block_nr;
int iDim;
int i;
int j;
if(argc != 3 && argc != 4)
{
fprintf(stderr,
"usage: snap2arr block snapbase [N_files]\n");
exit(-1);
}
block_nr = atoi(argv[1]);
strcpy(basename, argv[2]);
if(argc == 4 )
{
files = atoi(argv[3]); /* # of files per snapshot */
}
else
files = 1;
iDim = load_snapshot(basename, block_nr, files);
for(i=1; i<=NumPart; i++) {
for(j = 0; j < iDim; j++) {
printf("%g\n", P[i].Pos[j]);
}
}
free_memory();
return 0;
}
/* Here we load a snapshot file. It can be distributed
* onto several files (for files>1).
* The particles are brought back into the order
* implied by their ID's.
* A unit conversion routine is called to do unit
* conversion, and to evaluate the gas temperature.
*/
int main(int argc, char **argv)
{
char path[200], input_fname[200], output_fname[200], basename[200], basenameout[200];
int j, n, type, snapshot_number, files, Ngas, random, ncount, ncounthalo1, ncount2;
double x,y,z,x1,y1, z1, delr;
double nh, nhmax, nhmax2, mass, mmax, mmax2, dis, xmax, xmax2, ymax, ymax2, zmax, zmax2, sl, masstot, temp, tmax, h2, h2max, gam, gammin;
double sinkposx, sinkposy, sinkposz, disAU, vrad, vrotx, vroty, vrotz, vrot;
double velx, vely, velz;
double dum_num;
FILE *outfile;
sprintf(path, "/work/utexas/ao/minerva");
sprintf(basename, "hires_am2");
sprintf(basenameout, "snaphires_am2_chem");
for(j=2;j<=2;j++){
snapshot_number= j; /* number of snapshot */
files=1; /* number of files per snapshot */
sprintf(input_fname, "%s/%s_%03d", path, basename, snapshot_number);
sprintf(output_fname, "%s/%s_%03d", path, basenameout, snapshot_number);
Ngas = load_snapshot(input_fname, files);
/* reordering();*/ /* call this routine only if your ID's are set properly */
unit_conversion();
outfile=fopen(output_fname, "w");
ncount = 0;
ncount2 = 0;
nhmax = nhmax2 = 0;
mmax= mmax2 = 0;
xmax= xmax2 = 0;
ymax= ymax2 = 0;
zmax= zmax2 = 0;
sl = 0;
tmax=0;
h2max=0;
for(n = 1; n <= Ngas; n++)
{
if(P[n].Id == 3755078)
{
sinkposx = P[n].Pos[0];
sinkposy = P[n].Pos[1];
sinkposz = P[n].Pos[2];
}
}
for(n=1;n<=Ngas;n++) {
x=P[n].Pos[0];
y=P[n].Pos[1];
z=P[n].Pos[2];
x1=x/(0.7e0*(1.e0 + 18.9e0));
y1=y/(0.7e0*(1.e0 + 18.9e0));
z1=z/(0.7e0*(1.e0 + 18.9e0));
nh = P[n].nh;
mass=P[n].Mass;
masstot=masstot+mass;
h2 = P[n].H2I;
if(nh > nhmax2 && mass < 3.e-12)
{
nhmax2 = nh;
mmax2=mass;
xmax2=P[n].Pos[0];
ymax2=P[n].Pos[1];
zmax2=P[n].Pos[2];
}
if(nh > nhmax)
{
nhmax = nh;
mmax=mass;
xmax=P[n].Pos[0];
ymax=P[n].Pos[1];
zmax=P[n].Pos[2];
h2max=P[n].H2I;
}
}
random = rand();
dum_num = 5.0;
sinkposx=xmax;
sinkposy=ymax;
sinkposz=zmax;
printf("sinkposx = %g, sinkposy = %g, sinkposz = %g\n", sinkposx, sinkposy, sinkposz);
printf("nhmax2 = %lg, maxmass2 = %lg, xmax2 = %lg, ymax2 = %lg, zmax2 = %lg\n", nhmax2, mmax2, xmax2, ymax2, zmax2);
for(n = 1; n <= Ngas; n++)
{
dis = pow(((P[n].Pos[0]-sinkposx)*(P[n].Pos[0]-sinkposx) + (P[n].Pos[1]-sinkposy)*(P[n].Pos[1]-sinkposy) + (P[n].Pos[2]-sinkposz)*(P[n].Pos[2]-sinkposz)), 0.5);
dis=dis*1.e3*Time/(0.7);
disAU=dis*206264.806;
if (/*(random*(1.e0/RAND_MAX))< 0.1e0*/ /* P[n].nh > 1.e4 || P[n].sink > 0.5*/ P[n].Id % 100 == 0) {
//fprintf(outfile,"%15.13g %8d %15.13g %15.13g %15.13g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g\n", P[n].sink, Id[n],x,y,z,P[n].Temp,P[n].nh,P[n].HII,P[n].H2I,P[n].HDI, P[n].gam, P[n].Vel[0],P[n].Vel[1],P[n].Vel[2],P[n].hsm, P[n].Mass);
fprintf(outfile,"%15.13g %8d %15.13g %15.13g %15.13g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g\n", dum_num, P[n].Id,P[n].Pos[0],P[n].Pos[1],P[n].Pos[2],dum_num,P[n].nh,P[n].HII,P[n].H2I,P[n].HDI, dum_num, disAU, vrad, vrot,dum_num, P[n].Mass);
ncount = ncount + 1;
}
delr = sqrt((226.791-x)*(226.791-x) + (230.096-y)*(230.096-y) + (230.16-z)*(230.16-z))/(0.7e0*19.98);
}
printf("ncount = %d.\n", ncount);
printf("ncount2 = %d.\n", ncount2);
printf("nhmax= %g\n", nhmax);
printf("mmax= %g\n", mmax);
printf("xmax= %g\n", xmax);
printf("ymax= %g\n", ymax);
printf("zmax= %g\n", zmax);
printf("sl = %g\n", sl);
printf("tmax = %g\n", tmax);
printf("h2max = %g\n", h2max);
fclose(outfile);
}
do_what_you_want();
}
/* Here we load a snapshot file. It can be distributed
* onto several files (for files>1).
* The particles are brought back into the order
* implied by their ID's.
* A unit conversion routine is called to do unit
* conversion, and to evaluate the gas temperature.
*/
int main(int argc, char **argv)
{
char path[200], input_fname[200], output_fname[200], basename[200], basenameout[200];
int i, j, jnum, n, type, snapshot_number, files, random, ncount, ncounthalo1, ncount2, idmax;
double x,y,z,x1,y1, z1, delr, vx, vy, vz, vel, typemax, dismax;
double nh, nhmax, mass, mmax, dis, xmax, ymax, zmax, sl, masstot, temp, tmax, h2, h2max, gam, gammin;
double sinkposx, sinkposy, sinkposz, disAU, vrad, vrotx, vroty, vrotz, vrot, mh_mass;
double xCOM, yCOM, zCOM, vxCOM, vyCOM, vzCOM, disCOM, vCOM, ncount_doub;
double hubble_param;
FILE *outfile;
sprintf(path, "/work/00863/minerva/strom");
sprintf(basename, "strom");
sprintf(basenameout, "snapstrom");
jnum = 800;
for(j=jnum;j<=jnum;j=j+5){
snapshot_number= j; /* number of snapshot */
files=1; /* number of files per snapshot */
if(j<=999)
{
sprintf(input_fname, "%s/%s_%04d", path, basename, snapshot_number);
sprintf(output_fname, "%s/%s_%04d", path, basenameout, snapshot_number);
}
if(j>999)
{
sprintf(input_fname, "%s/%s_%04d", path, basename, snapshot_number);
sprintf(output_fname, "%s/%s_%04d", path, basenameout, snapshot_number);
}
Ngas = load_snapshot(input_fname, files);
//for NON-comoving integrations
Time = hubble_param = 1.0;
/* reordering();*/ /* call this routine only if your ID's are set properly */
printf("hi 1, Ngas = %d, NumPart = %d\n", Ngas, NumPart);
unit_conversion();
printf("hi 2\n");
outfile=fopen(output_fname, "w");
ncount = 0;
ncount2 = 0;
printf("hi 3\n");
nhmax = 0;
mmax = mh_mass = 0;
xmax = ymax = zmax = 0;
sl = tmax = h2max = gammin=0;
masstot = dismax = 0;
typemax = 5;
xCOM = yCOM = zCOM = vxCOM = vyCOM = vzCOM = ncount_doub = 0.0;
printf("hi 4\n");
for(n=0;n<Ngas;n++) {
nh = P[n].nh;
mass=P[n].Mass;
temp = P[n].Temp;
h2 = P[n].H2I;
gam=P[n].gam;
if(nh > nhmax)
//if(mass > mmax)
{
//printf("Found the sink!\n");
nhmax = nh;
mmax=mass;
xmax=P[n].Pos[0];
ymax=P[n].Pos[1];
zmax=P[n].Pos[2];
sl = P[n].hsm;
tmax=P[n].Temp;
h2max=P[n].H2I;
gammin=P[n].gam;
typemax = P[n].Type;
idmax = P[n].Id;
vx = P[n].Vel[0];
vy = P[n].Vel[1];
vz = P[n].Vel[2];
}
}
for(n=0;n<=Ngas;n++)
{
nh = P[n].nh;
if(nh > nhmax/1e8)
{
vxCOM = vxCOM + P[n].Vel[0]*P[n].Mass;
vyCOM = vyCOM + P[n].Vel[1]*P[n].Mass;
vzCOM = vzCOM + P[n].Vel[2]*P[n].Mass;
xCOM = xCOM + P[n].Pos[0]*P[n].Mass;
yCOM = yCOM + P[n].Pos[1]*P[n].Mass;
zCOM = zCOM + P[n].Pos[2]*P[n].Mass;
ncount_doub = ncount_doub + P[n].Mass;
}
//if(nh > 1.e6)
//if(nh > 1e3 && nh < 1e5)
//printf("ID = %d, nh = %lg\n", P[n].Id, P[n].nh);
//printf("%d\n", P[n].Id);
}
vx = vxCOM/ncount_doub;
vy = vyCOM/ncount_doub;
vz = vzCOM/ncount_doub;
sinkposx=xmax;
sinkposy=ymax;
sinkposz=zmax;
printf("sinkposx = %15.11g, sinkposy = %15.11g, sinkposz = %15.11g, nhmax = %15.11g, mmax = %15.11g\n", sinkposx, sinkposy, sinkposz, nhmax, mmax);
vx = vy = vz = 0;
sinkposx = sinkposy = sinkposz = header1.BoxSize/2.0;
if(nhmax < 1.e1)
{
sinkposx=header1.BoxSize/2.0;
sinkposy=header1.BoxSize/2.0;
sinkposz=header1.BoxSize/2.0;
}
printf("sinkposx = %15.11g, sinkposy = %15.11g, sinkposz = %15.11g\n", sinkposx, sinkposy, sinkposz);
printf("vx = %lg, vy = %lg, vz = %lg\n", vx, vy, vz);
for(n = 0; n < NumPart; n++)
//for(n = 0; n < Ngas; n++)
{
P[n].Vel[0] = P[n].Vel[0] - vx;
P[n].Vel[1] = P[n].Vel[1] - vy;
P[n].Vel[2] = P[n].Vel[2] - vz;
x = P[n].Pos[0];
y = P[n].Pos[1];
z = P[n].Pos[2];
dis = pow(((P[n].Pos[0]-sinkposx)*(P[n].Pos[0]-sinkposx) + (P[n].Pos[1]-sinkposy)*(P[n].Pos[1]-sinkposy) + (P[n].Pos[2]-sinkposz)*(P[n].Pos[2]-sinkposz)), 0.5);
//dis = pow(((P[n].Pos[0]-xmax)*(P[n].Pos[0]-xmax) + (P[n].Pos[1]-ymax)*(P[n].Pos[1]-ymax) + (P[n].Pos[2]-zmax)*(P[n].Pos[2]-zmax)), 0.5);
if(dis > dismax)
dismax = dis;
dis=dis*1.e3*Time/hubble_param;
disAU=dis*206264.806;
vel = P[n].Vel[0]*P[n].Vel[0] + P[n].Vel[1]*P[n].Vel[1] + P[n].Vel[2]*P[n].Vel[2];
vel = pow(vel,0.5)*pow(Time, 0.5);
vrad = (P[n].Vel[0]*(P[n].Pos[0]-sinkposx) + P[n].Vel[1]*(P[n].Pos[1]-sinkposy) + P[n].Vel[2]*(P[n].Pos[2]-sinkposz))/pow(((P[n].Pos[0]-sinkposx)*(P[n].Pos[0]-sinkposx) + (P[n].Pos[1]-sinkposy)*(P[n].Pos[1]-sinkposy) + (P[n].Pos[2]-sinkposz)*(P[n].Pos[2]-sinkposz)), 0.5);
vrad = vrad*pow(Time, 0.5);
vrotx = (P[n].Pos[1]-sinkposy)*P[n].Vel[2] - (P[n].Pos[2]-sinkposz)*P[n].Vel[1];
vroty = (P[n].Pos[2]-sinkposz)*P[n].Vel[0] - (P[n].Pos[0]-sinkposx)*P[n].Vel[2];
vrotz = (P[n].Pos[0]-sinkposx)*P[n].Vel[1] - (P[n].Pos[1]-sinkposy)*P[n].Vel[0];
vrot = pow(vrotx*vrotx + vroty*vroty + vrotz*vrotz, 0.5);
vrot = vrot*pow(Time, 0.5)/pow(((P[n].Pos[0]-sinkposx)*(P[n].Pos[0]-sinkposx) + (P[n].Pos[1]-sinkposy)*(P[n].Pos[1]-sinkposy) + (P[n].Pos[2]-sinkposz)*(P[n].Pos[2]-sinkposz)), 0.5);
; //convert to km/s
if(n%10000 == 0)
printf("ID = %d, nh = %lg, temp = %lg, elec %lg, H2 = %lg HeII = %lg mass = %lg\n", P[n].Id, P[n].nh, P[n].Temp, P[n].HII, P[n].H2I, P[n].HeII, P[n].Mass);
//f(P[n].nh > 1.e10 && P[n].sink > -4)
if(disAU <= 1.e2 /*&& P[n].sink < -4*/)
masstot = masstot + P[n].Mass/1.e-10/hubble_param;
if(P[n].sink > 0 && P[n].nh > 8.0e13)
printf("Mass = %g sink = %g ID = %d nh = %lg Dens = %lg Temp = %lg dis = %lg, vel = %lg, vrad = %lg, vrot = %lg\n", P[n].Mass, P[n].sink, P[n].Id, P[n].nh, P[n].Rho, P[n].Temp, disAU, vel, vrad, vrot);
random = rand();
if((random*(1.e0/RAND_MAX)< 0.2 && P[n].nh > 3.e-2) /*|| P[n].nh > 2.e1*/ /*&& P[n].sink < 0*/ /* || P[n].sink > 0.5*/ || P[n].Id < 3 )
//if(P[n].nh > 1.e4 /*&& random*(1.e0/RAND_MAX)< 0.1e0*/ /*|| P[n].sink > 0.5 || (random*(1.e0/RAND_MAX))< 0.02e0*/)
//if(dis < 1.e1)
{
fprintf(outfile,"%15.13g %12d %15.13g %15.13g %15.13g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g\n", P[n].sink, P[n].Id,x,y,z,P[n].Temp,P[n].nh,P[n].HII,P[n].H2I,P[n].HDI, P[n].gam, disAU, vrad, vrot,P[n].Vel[0], P[n].Mass);
//fprintf(outfile,"%15.13g %12d %15.13g %15.13g %15.13g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %15.6g %lg %lg %15.6g %15.6g\n", P[n].sink, Id[n],x,y,z,P[n].Temp,P[n].nh,P[n].HII,P[n].H2I,P[n].HDI, P[n].gam, disAU, P[n].Vel[0]*pow(Time, 0.5), P[n].Vel[2]*pow(Time, 0.5), P[n].hsm, P[n].Mass);
ncount = ncount + 1;
}
}
printf("ncount = %d.\n", ncount);
printf("ncount2 = %d.\n", ncount2);
printf("nhmax= %g\n", nhmax);
printf("mmax= %g\n", mmax);
printf("xmax= %15.11g\n", xmax);
printf("ymax= %15.11g\n", ymax);
printf("zmax= %15.11g\n", zmax);
printf("sl = %g\n", sl);
printf("tmax = %g\n", tmax);
printf("h2max = %g\n", h2max);
printf("gammin = %g\n", gammin);
printf("typemax = %lg\n", typemax);
printf("idmax = %d\n", idmax);
printf("sink = %g\n", P[n-1].sink);
printf("masstot = %g\n", masstot);
printf("dismax = %g\n", dismax);
fclose(outfile);
free(P);
}
do_what_you_want();
}
int main(int argc, char **argv)
{
int i = 0;
int j = 0;
int n = 0;
int m = 0;
int i_min = 0;
int i_max = 0;
int j_min = 0;
int j_max= 0;
int flag_i = 0;
int flag_j = 0;
int N_dm = 0;
int N_grid = 700;
int N_begin = 3051;
int N_end = 3099;
//int N_begin = 2550;
//int N_end = 2555;
// int n_grid1[N_grid][N_grid];
double n_grid1[N_grid][N_grid];
// int n_grid2[N_grid][N_grid];
double n_grid2[N_grid][N_grid];
double center_x = 70.286000395; //hires3 center
double center_y = 70.266843068;
double center_z = 69.644125951;
double width = 140.;
double slice = 140.;
double entries = 0.0;
double temp_pos = 0.0;
double min = 1.e-4;
double max = 1.e-1;
double abs_min = min;
double abs_max = max;
double time_in_Myr = 0.0;
double grid1[N_grid][N_grid];
double grid2[N_grid][N_grid];
double grid3[1][N_grid];
char dir[500];
char buf[500];
FILE *infile;
FILE *outfile;
int files;
int N_gas;
double hsml_factor=1.7;
double center_i, center_j, W_x, weight, h, x2, x;
double nh, nhmax, xmax, ymax, zmax, vx, vy, vz, xCOM, yCOM, zCOM, vxCOM, vyCOM, vzCOM, ncount_doub;
files=1;
double IDmass=0.0;
int IDsink;
//sprintf(dir, "/work/00863/minerva/ds_nr6e");
//sprintf(dir, "/nobackupp1/astacy/bin_HR1");
//sprintf(dir, "/nobackupp1/astacy/hires2");
sprintf(dir, "/nobackupp1/astacy/hires_test10");
//sprintf(dir, "/nobackupp1/astacy/hires_nf3");
for(m = N_begin; m < N_end+1; m=m+1)
{
if(m < 10)
{
sprintf(buf, "%s_00%d", dir, m);
printf("reading 00%d...\n", m);
N_gas=load_snapshot(buf, files);
sprintf(buf, "%s_00%d.H2xz", dir, m);
printf("processing 00%d...\n", m);
}
else if(m > 9 && m < 100)
{
sprintf(buf, "%s_0%d", dir, m);
printf("reading 0%d...\n", m);
N_gas=load_snapshot(buf, files);
sprintf(buf, "%s_0%d.H2xz", dir, m);
printf("processing 0%d...\n", m);
}
else
{
sprintf(buf, "%s_%d", dir, m);
printf("reading %d...\n", m);
N_gas=load_snapshot(buf, files);
sprintf(buf, "%s_%d.H2xz", dir, m);
printf("processing %d...\n", m);
}
//width= 7.5*4.85e-4*header.HubbleParam/(1.e3*header.time); //cut out central 750 AU
//slice= 7.5*4.85e-4*header.HubbleParam/(1.e3*header.time);
width= 5*4.85e-4*header.HubbleParam/(1.e3*header.time); //500 AU
slice= 5*4.85e-4*header.HubbleParam/(1.e3*header.time);
//width= 2.4e-2*header.HubbleParam/(1.e3*header.time);
//slice= 2.4e-2*header.HubbleParam/(1.e3*header.time);
IDmass = 0.0;
IDsink = 0;
for(n = 0; n < N_gas; n++)
{
P[n].nh = P[n].Density*unit_mass/pow(unit_length,3.0)*pow(header.HubbleParam,2.0)/pow(header.time,3.0)*X/m_H;
if (n%100000 ==0) printf("%lg\n", P[n].nh);
}
xCOM = yCOM = zCOM = vxCOM = vyCOM = vzCOM = ncount_doub = nhmax = 0;
for(n=0;n < N_gas; n++)
{
nh = P[n].nh;
if(nh > nhmax)
{
nhmax = nh;
xmax=P[n].Pos[0];
ymax=P[n].Pos[1];
zmax=P[n].Pos[2];
vx = P[n].Vel[0];
vy = P[n].Vel[1];
vz = P[n].Vel[2];
}
}
for(n=0;n < N_gas; n++)
{
nh = P[n].nh;
if(nh > nhmax/10.0)
{
vxCOM = vxCOM + P[n].Vel[0]*P[n].Mass;
vyCOM = vyCOM + P[n].Vel[1]*P[n].Mass;
vzCOM = vzCOM + P[n].Vel[2]*P[n].Mass;
xCOM = xCOM + P[n].Pos[0]*P[n].Mass;
yCOM = yCOM + P[n].Pos[1]*P[n].Mass;
zCOM = zCOM + P[n].Pos[2]*P[n].Mass;
ncount_doub = ncount_doub + P[n].Mass;
}
}
vx = vxCOM/ncount_doub;
vy = vyCOM/ncount_doub;
vz = vzCOM/ncount_doub;
center_x=xCOM/ncount_doub;
center_y=yCOM/ncount_doub;
center_z=zCOM/ncount_doub;
time_in_Myr = 2.0/3.0/Hubble/header.HubbleParam/sqrt(header.Omega0)*pow(header.time,3.0/2.0)/1.0e6/yr;
flag_i = 0;
flag_j = 0;
for(i = 0; i < N_grid; i++)
{
for(j = 0; j < N_grid; j++)
{
n_grid1[i][j] = 0;
grid1[i][j] = 0.0;
}
}
for(n = 0; n < N_gas; n++)
{
if(P[n].sink > -1 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < slice/2.0)
{
h = fmax(hsml_factor * P[n].Hsml, width / N_grid / 2.0);
weight = P[n].nh * P[n].nh;
if(P[n].sink > 0)
//h = hsml_factor * 3.57101e-07;
h = hsml_factor * 2.5696e-08;
i = 0;
j=0;
i_min = int((P[n].Pos[0]-h-center_x+width/2.0)/width*N_grid);
if(i_min < 0)
{
i_min = 0;
}
i_max = int((P[n].Pos[0]+h-center_x+width/2.0)/width*N_grid);
if(i_max > N_grid-1)
{
i_max = N_grid-1;
}
j_min = int((P[n].Pos[2]-h-center_z+width/2.0)/width*N_grid);
if(j_min < 0)
{
j_min = 0;
}
j_max = int((P[n].Pos[2]+h-center_z+width/2.0)/width*N_grid);
if(j_max > N_grid-1)
{
j_max = N_grid-1;
}
do
{
if(i >= i_min && i <= i_max)
{
flag_i = 1;
center_i = center_x - width / 2.0 + (i + 0.5) * width / (double) N_grid;
do
{
if(j >= j_min && j <= j_max)
{
flag_j = 1;
center_j = center_z - width / 2.0 + (j + 0.5) * width / (double) N_grid;
x2 = ((P[n].Pos[0] - center_i) * (P[n].Pos[0] - center_i) + (P[n].Pos[2] - center_j) * (P[n].Pos[2] - center_j)) / h / h;
if(x2 <= 1.0)
{
x = sqrt(x2);
if(x <= 0.5)
W_x = 1.0 - 6.0 * x * x + 6.0 * x * x * x;
else
W_x = 2.0 * (1.0 - x) * (1.0 - x) * (1.0 - x);
grid1[i][j] += weight * P[n].H2I * W_x;
n_grid1[i][j] += weight * W_x;
}
// n_grid1[i][j] += 1;
// grid1[i][j] += P[n].nh;
}
else if(j > j_max)
{
flag_j = 2;
}
else
{
flag_j = 0;
}
j++;
}
while((flag_j == 0 || flag_j == 1) && j < N_grid);
j = 0;
}
else if(i > i_max)
{
flag_i = 2;
}
else
{
flag_i = 0;
}
i++;
}
while((flag_i == 0 || flag_i == 1) && i < N_grid);
i = 0;
}
}
for(i = 0; i < N_grid; i++)
{
for(j = 0; j < N_grid; j++)
{
if(n_grid1[i][j] > 0)
{
grid1[i][j] /= double(n_grid1[i][j]);
}
if(grid1[i][j] < min)
{
grid1[i][j] = min;
}
if(grid1[i][j] > max)
{
grid1[i][j] = max;
}
grid1[i][j] = log10(grid1[i][j]);
}
}
grid1[0][0] = log10(abs_min);
grid1[N_grid-1][N_grid-1] = log10(abs_max);
flag_i = 0;
flag_j = 0;
for(i = 0; i < N_grid; i++)
{
for(j = 0; j < N_grid; j++)
{
n_grid2[i][j] = 0;
grid2[i][j] = 0.0;
}
}
for(n = 0; n < N_gas; n++)
{
if(double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0 && double(fabs(P[n].Pos[0]-center_x)) < slice/2.0)
{
h = fmax(hsml_factor * P[n].Hsml, width / N_grid / 2.0);
weight = P[n].nh * P[n].nh;
i = 0;
j=0;
i_min = int((P[n].Pos[2]-h-center_z+width/2.0)/width*N_grid);
if(i_min < 0)
{
i_min = 0;
}
i_max = int((P[n].Pos[2]+h-center_z+width/2.0)/width*N_grid);
if(i_max > N_grid-1)
{
i_max = N_grid-1;
}
j_min = int((P[n].Pos[1]-h-center_y+width/2.0)/width*N_grid);
if(j_min < 0)
{
j_min = 0;
}
j_max = int((P[n].Pos[1]+h-center_y+width/2.0)/width*N_grid);
if(j_max > N_grid-1)
{
j_max = N_grid-1;
}
do
{
if(i >= i_min && i <= i_max)
{
flag_i = 1;
center_i = center_z - width / 2.0 + (i + 0.5) * width / (double) N_grid;
do
{
if(j >= j_min && j <= j_max)
{
flag_j = 1;
center_j = center_y - width / 2.0 + (j + 0.5) * width / (double) N_grid;
x2 = ((P[n].Pos[2] - center_i) * (P[n].Pos[2] - center_i) + (P[n].Pos[1] -
center_j) * (P[n].Pos[1] - center_j)) / h / h;
if(x2 <= 1.0)
{
x = sqrt(x2);
if(x <= 0.5)
W_x = 1.0 - 6.0 * x * x + 6.0 * x * x * x;
else
W_x = 2.0 * (1.0 - x) * (1.0 - x) * (1.0 - x);
grid2[i][j] += weight * P[n].H2I * W_x;
n_grid2[i][j] += weight * W_x;
}
//n_grid2[i][j] += 1;
//grid2[i][j] += P[n].nh;
}
else if(j > j_max)
{
flag_j = 2;
}
else
{
flag_j = 0;
}
j++;
}
while((flag_j == 0 || flag_j == 1) && j < N_grid);
j = 0;
}
else if(i > i_max)
{
flag_i = 2;
}
else
{
flag_i = 0;
}
i++;
}
while((flag_i == 0 || flag_i == 1) && i < N_grid);
i = 0;
}
}
for(i = 0; i < N_grid; i++)
{
for(j = 0; j < N_grid; j++)
{
if(n_grid2[i][j] > 0)
{
grid2[i][j] /= double(n_grid2[i][j]);
}
if(grid2[i][j] < min)
{
grid2[i][j] = min;
}
if(grid2[i][j] > max)
{
grid2[i][j] = max;
}
grid2[i][j] = log10(grid2[i][j]);
}
}
grid2[0][0] = log10(abs_min);
grid2[N_grid-1][N_grid-1] = log10(abs_max);
for(j = 0; j < N_grid; j++)
{
grid3[0][j] = log10(min)+(2.0*j+1.0)*(log10(max)-log10(min))/double(N_grid)/2.0;
}
grid3[0][0] = log10(abs_min);
outfile = fopen(buf, "w");
fwrite(grid1,sizeof(grid1),1,outfile);
fwrite(grid2,sizeof(grid2),1,outfile);
fwrite(grid3,sizeof(grid3),1,outfile);
fwrite(&header.redshift,sizeof(double),1,outfile);
fwrite(&time_in_Myr,sizeof(double),1,outfile);
entries = 0.0;
for(n = 0; n < N_gas; n++)
{
if(P[n].sink > 0.5 && P[n].Mass > IDmass)
{
IDmass = P[n].Mass;
IDsink = P[n].Id;
}
}
for(n = 0; n < N_gas; n++)
{
if(P[n].sink > 0.5 /*Id[n]*/ /*P[n].Id == IDsink*/ && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
entries++;
}
}
fwrite(&entries,sizeof(double),1,outfile);
for(n = 0; n < N_gas; n++)
{
if(/*P[n].flag_split > 0.5*/ /*Id[n]*/ P[n].Id == IDsink && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[0]-center_x+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(/*P[n].flag_split > 0.5*/ /*Id[n]*/ P[n].Id == 4333881 && P[n].sink > 0.5 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[0]-center_x+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(P[n].sink > 0.5 && /*Id[n]*/ P[n].Id != IDsink && P[n].Id != 4333881 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[0]-center_x+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(/*P[n].flag_split > 0.5 &&*/ /*Id[n]*/ P[n].Id == IDsink && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[1]-center_y+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(/*P[n].flag_split > 0.5 &&*/ /*Id[n]*/ P[n].Id == 4333881 && P[n].sink > 0.5 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[1]-center_y+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(P[n].sink > 0.5 && /*Id[n]*/ P[n].Id != IDsink && P[n].Id != 4333881 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[1]-center_y+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(/*P[n].flag_split > 0.5 &&*/ /*Id[n]*/ P[n].Id == IDsink && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[2]-center_z+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
// for(n = 0; n < N_gas; n++)
// {
// if(/*P[n].flag_split > 0.5 &&*/ /*Id[n]*/ P[n].Id == 4333881 && P[n].sink > 0.5 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
// {
// temp_pos = double(int((P[n].Pos[2]-center_z+width/2.0)/width*double(N_grid)))/double(N_grid);
// fwrite(&temp_pos,sizeof(double),1,outfile);
// }
// }
for(n = 0; n < N_gas; n++)
{
if(P[n].sink > 0.5 && /*Id[n]*/ P[n].Id != IDsink && P[n].Id != 4333881 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[2]-center_z+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
fclose(outfile);
free(P);
}
printf("done!\n");
}
int main(int argc, char **argv)
{
int i = 0;
int j = 0;
int n = 0;
int m = 0;
int i_min = 0;
int i_max = 0;
int j_min = 0;
int j_max= 0;
int flag_i = 0;
int flag_j = 0;
int N_dm = 0;
int N_grid = 700;
int N_begin = 250;
int N_end = 250;
// int n_grid1[N_grid][N_grid];
double n_grid1[N_grid][N_grid];
int n_grid2[N_grid][N_grid];
double center_x = 50.339339267;
double center_y = 50.121980449;
double center_z = 49.486589836;
//double center_x = 50.339110394;
//double center_y = 50.122129369;
//double center_z = 49.486652645;
//double center_x = 1.1711596704;
//double center_y = 67.550984743;
//double center_z = 45.119393665;
//double center_x = 70.0;
//double center_y = 70.0;
//double center_z = 70.0;
double width = 140.0;
double slice = 140.0;
double entries = 0.0;
double temp_pos = 0.0;
double min = 1.0e-4;
double max = 1.0e-1;
double abs_min = min;
double abs_max = max;
double time_in_Myr = 0.0;
double grid1[N_grid][N_grid];
double grid2[N_grid][N_grid];
double grid3[1][N_grid];
char dir[500];
char buf[500];
FILE *infile;
FILE *outfile;
double IDmass=0.0;
int IDsink;
double mu, u, h2frac, muh2, muh2in, gamma;
int files;
double hsml_factor=1.7;
double center_i, center_j, W_x, weight, h, x2, x;
files=1;
//sprintf(dir, "/work/00863/minerva/tgridsink_ifront_nr6e");
sprintf(dir, "/work/00863/minerva/ds_nr6e");
for(m = N_begin; m < N_end+1; m++)
{
if(m < 10)
{
sprintf(buf, "%s_00%d", dir, m);
printf("reading 00%d...\n", m);
N_gas=load_snapshot(buf, files);
sprintf(buf, "%s_00%d.HIIxz", dir, m);
printf("processing 00%d...\n", m);
}
else if(m > 9 && m < 100)
{
sprintf(buf, "%s_0%d", dir, m);
printf("reading 0%d...\n", m);
N_gas=load_snapshot(buf, files);
sprintf(buf, "%s_0%d.HIIxz", dir, m);
printf("processing 0%d...\n", m);
}
else
{
sprintf(buf, "%s_%d", dir, m);
printf("reading %d...\n", m);
N_gas=load_snapshot(buf, files);
sprintf(buf, "%s_%d.HIIxz", dir, m);
printf("processing %d...\n", m);
}
printf("Point 1\n");
width= 2.0*2.4e-2*header.HubbleParam/(1.e3*header.time);
slice= 2.0*2.4e-2*header.HubbleParam/(1.e3*header.time);
//width= 2e0*header.HubbleParam/(1.e3*header.time);
//slice= 2e0*header.HubbleParam/(1.e3*header.time);
IDmass = 0.0;
IDsink = 0;
for(n = 0; n < N_gas; n++)
{
//P[n].nh = P[n].Density*unit_mass/pow(unit_length,3.0)*pow(header.HubbleParam,2.0)/pow(header.time,3.0)*X/m_H;
//mu = 4.0/(3.0*X+1.0+4.0*X*P[n].elec);
mu=1.2195;
h2frac=2.0*P[n].H2I;
muh2in=(0.24/4.0) + ((1.0-h2frac)*0.76) + (h2frac*.76/2.0);
muh2=pow(muh2in, -1.0);
if(muh2 >= 1.22){
mu=muh2;
}
gamma = P[n].gam;
P[n].Temp = P[n].EgySpec*unit_energy/unit_mass*mu*(gamma-1.0)*m_H/k_B;
P[n].nh = P[n].Density*unit_mass/pow(unit_length,3.0)*pow(header.HubbleParam,2.0)/pow(header.time,3.0)*X/m_H;
}
printf("HII= %lg \n", P[100].HII);
time_in_Myr = 2.0/3.0/Hubble/header.HubbleParam/sqrt(header.Omega0)*pow(header.time,3.0/2.0)/1.0e6/yr;
flag_i = 0;
flag_j = 0;
for(i = 0; i < N_grid; i++)
{
for(j = 0; j < N_grid; j++)
{
n_grid1[i][j] = 0;
grid1[i][j] = 0.0;
}
}
printf("Point 2\n");
for(n = 0; n < N_gas; n++)
{
if(fabs(P[n].Pos[0]-center_x) < width/2.0 && fabs(P[n].Pos[1]-center_y) < width/2.0 && fabs(P[n].Pos[2]-center_z) < width/2.0 && fabs(P[n].Pos[2]-center_z) < slice/2.0)
{
h = fmax(hsml_factor * P[n].Hsml, width / N_grid / 2.0);
weight = P[n].nh * P[n].nh;
if(P[n].sink > 0)
h = hsml_factor * 3.57101e-07;
i = 0;
j=0;
i_min = int((P[n].Pos[0]-h-center_x+width/2.0)/width*N_grid);
if(i_min < 0)
{
i_min = 0;
}
i_max = int((P[n].Pos[0]+h-center_x+width/2.0)/width*N_grid);
if(i_max > N_grid-1)
{
i_max = N_grid-1;
}
j_min = int((P[n].Pos[2]-h-center_z+width/2.0)/width*N_grid);
if(j_min < 0)
{
j_min = 0;
}
j_max = int((P[n].Pos[2]+h-center_z+width/2.0)/width*N_grid);
if(j_max > N_grid-1)
{
j_max = N_grid-1;
}
do
{
if(i >= i_min && i <= i_max)
{
flag_i = 1;
center_i = center_x - width / 2.0 + (i + 0.5) * width / (double) N_grid;
do
{
if(j >= j_min && j <= j_max)
{
flag_j = 1;
center_j = center_z - width / 2.0 + (j + 0.5) * width / (double) N_grid;
x2 = ((P[n].Pos[0] - center_i) * (P[n].Pos[0] - center_i) + (P[n].Pos[2] -
center_j) * (P[n].Pos[2] - center_j)) / h / h;
if(x2 <= 1.0)
{
x = sqrt(x2);
if(x <= 0.5)
W_x = 1.0 - 6.0 * x * x + 6.0 * x * x * x;
else
W_x = 2.0 * (1.0 - x) * (1.0 - x) * (1.0 - x);
grid1[i][j] += weight * P[n].HII * W_x;
n_grid1[i][j] += weight * W_x;
}
}
else if(j > j_max)
{
flag_j = 2;
}
else
{
flag_j = 0;
}
j++;
}
while((flag_j == 0 || flag_j == 1) && j < N_grid);
j = 0;
}
else if(i > i_max)
{
flag_i = 2;
}
else
{
flag_i = 0;
}
i++;
}
while((flag_i == 0 || flag_i == 1) && i < N_grid);
i = 0;
}
}
printf("Point 3\n");
for(i = 0; i < N_grid; i++)
{
for(j = 0; j < N_grid; j++)
{
if(n_grid1[i][j] > 0)
{
grid1[i][j] /= double(n_grid1[i][j]);
}
if(grid1[i][j] < min)
{
grid1[i][j] = min;
}
if(grid1[i][j] > max)
{
grid1[i][j] = max;
}
grid1[i][j] = log10(grid1[i][j]);
}
}
grid1[0][0] = log10(abs_min);
grid1[N_grid-1][N_grid-1] = log10(abs_max);
flag_i = 0;
flag_j = 0;
printf("Point 4\n");
for(i = 0; i < N_grid; i++)
{
for(j = 0; j < N_grid; j++)
{
n_grid2[i][j] = 0;
grid2[i][j] = 0.0;
}
}
printf("Point 5\n");
for(n = 0; n < N_gas; n++)
{
if(fabs(P[n].Pos[0]-center_x) < width/2.0 && fabs(P[n].Pos[1]-center_y) < width/2.0 && fabs(P[n].Pos[2]-center_z) < width/2.0 && fabs(P[n].Pos[0]-center_x) < slice/2.0)
{
i = 0;
j=0;
i_min = int((P[n].Pos[2]-h-center_z+width/2.0)/width*N_grid);
if(i_min < 0)
{
i_min = 0;
}
i_max = int((P[n].Pos[2]+h-center_z+width/2.0)/width*N_grid);
if(i_max > N_grid-1)
{
i_max = N_grid-1;
}
j_min = int((P[n].Pos[1]-h-center_y+width/2.0)/width*N_grid);
if(j_min < 0)
{
j_min = 0;
}
j_max = int((P[n].Pos[1]+h-center_y+width/2.0)/width*N_grid);
if(j_max > N_grid-1)
{
j_max = N_grid-1;
}
do
{
if(i >= i_min && i <= i_max)
{
flag_i = 1;
do
{
if(j >= j_min && j <= j_max)
{
flag_j = 1;
n_grid2[i][j] += 1;
grid2[i][j] += P[n].HII;
}
else if(j > j_max)
{
flag_j = 2;
}
else
{
flag_j = 0;
}
j++;
}
while((flag_j == 0 || flag_j == 1) && j < N_grid);
j = 0;
}
else if(i > i_max)
{
flag_i = 2;
}
else
{
flag_i = 0;
}
i++;
}
while((flag_i == 0 || flag_i == 1) && i < N_grid);
i = 0;
}
}
printf("Point 6\n");
for(i = 0; i < N_grid; i++)
{
for(j = 0; j < N_grid; j++)
{
if(n_grid2[i][j] > 0)
{
grid2[i][j] /= double(n_grid2[i][j]);
}
if(grid2[i][j] < min)
{
grid2[i][j] = min;
}
if(grid2[i][j] > max)
{
grid2[i][j] = max;
}
grid2[i][j] = log10(grid2[i][j]);
}
}
grid2[0][0] = log10(abs_min);
grid2[N_grid-1][N_grid-1] = log10(abs_max);
for(j = 0; j < N_grid; j++)
{
grid3[0][j] = log10(min)+(2.0*j+1.0)*(log10(max)-log10(min))/double(N_grid)/2.0;
}
grid3[0][0] = log10(abs_min);
outfile = fopen(buf, "w");
fwrite(grid1,sizeof(grid1),1,outfile);
fwrite(grid2,sizeof(grid2),1,outfile);
fwrite(grid3,sizeof(grid3),1,outfile);
fwrite(&header.redshift,sizeof(double),1,outfile);
fwrite(&time_in_Myr,sizeof(double),1,outfile);
entries = 0.0;
printf("Point 7\n");
/*
for(n = 1; n <= N_gas; n++)
{
if(P[n].flag_split > 0.5 (Id[n] == 4025757 || Id[n] == 3410514 || Id[n] == 4014428) && fabs(P[n].Pos[0]-center_x) < width/2.0 && fabs(P[n].Pos[1]-center_y) < width/2.0 && fabs(P[n].Pos[2]-center_z) < width/2.0)
{
entries++;
}
}
fwrite(&entries,sizeof(double),1,outfile);
for(n = 1; n <= N_gas; n++)
{
if(P[n].flag_split > 0.5 (Id[n] == 4025757 || Id[n] == 3410514 || Id[n] == 4014428) && fabs(P[n].Pos[0]-center_x) < width/2.0 && fabs(P[n].Pos[1]-center_y) < width/2.0 && fabs(P[n].Pos[2]-center_z) < width/2.0)
{
temp_pos = double(int((P[n].Pos[0]-center_x+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 1; n <= N_gas; n++)
{
if(P[n].flag_split > 0.5 (Id[n] == 4025757 || Id[n] == 3410514 || Id[n] == 4014428) && fabs(P[n].Pos[0]-center_x) < width/2.0 && fabs(P[n].Pos[1]-center_y) < width/2.0 && fabs(P[n].Pos[2]-center_z) < width/2.0)
{
temp_pos = double(int((P[n].Pos[1]-center_y+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 1; n <= N_gas; n++)
{
if(P[n].flag_split > 0.5 (Id[n] == 4025757 || Id[n] == 3410514 || Id[n] == 4014428) && fabs(P[n].Pos[0]-center_x) < width/2.0 && fabs(P[n].Pos[1]-center_y) < width/2.0 && fabs(P[n].Pos[2]-center_z) < width/2.0)
{
temp_pos = double(int((P[n].Pos[2]-center_z+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
*/
for(n = 0; n < N_gas; n++)
{
if(P[n].sink > 0.5 && P[n].Mass > IDmass)
{
IDmass = P[n].Mass;
IDsink = P[n].Id;
}
}
for(n = 0; n < N_gas; n++)
{ if(P[n].sink > 0.5 /*Id[n]*/ /*P[n].Id == IDsink*/ && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
entries++;
}
}
fwrite(&entries,sizeof(double),1,outfile);
for(n = 0; n < N_gas; n++)
{
if(/*P[n].flag_split > 0.5*/ /*Id[n]*/ P[n].Id == IDsink && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[0]-center_x+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(/*P[n].flag_split > 0.5*/ /*Id[n]*/ P[n].Id == 4333881 && P[n].sink > 0.5 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[0]-center_x+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(P[n].sink > 0.5 && /*Id[n]*/ P[n].Id != IDsink && P[n].Id != 4333881 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[0]-center_x+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(/*P[n].flag_split > 0.5 &&*/ /*Id[n]*/ P[n].Id == IDsink && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[1]-center_y+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(/*P[n].flag_split > 0.5 &&*/ /*Id[n]*/ P[n].Id == 4333881 && P[n].sink > 0.5 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[1]-center_y+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(P[n].sink > 0.5 && /*Id[n]*/ P[n].Id != IDsink && P[n].Id != 4333881 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[1]-center_y+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(/*P[n].flag_split > 0.5 &&*/ /*Id[n]*/ P[n].Id == IDsink && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[2]-center_z+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(/*P[n].flag_split > 0.5 &&*/ /*Id[n]*/ P[n].Id == 4333881 && P[n].sink > 0.5 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[2]-center_z+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
for(n = 0; n < N_gas; n++)
{
if(P[n].sink > 0.5 && /*Id[n]*/ P[n].Id != IDsink && P[n].Id != 4333881 && double(fabs(P[n].Pos[0]-center_x)) < width/2.0 && double(fabs(P[n].Pos[1]-center_y)) < width/2.0 && double(fabs(P[n].Pos[2]-center_z)) < width/2.0)
{
temp_pos = double(int((P[n].Pos[2]-center_z+width/2.0)/width*double(N_grid)))/double(N_grid);
fwrite(&temp_pos,sizeof(double),1,outfile);
}
}
printf("Point 10\n");
fclose(outfile);
printf("Point 11\n");
free(P);
}
printf("done!\n");
}
/* Here we load a snapshot file. It can be distributed
* onto several files (for files>1).
* The particles are brought back into the order
* implied by their ID's.
* A unit conversion routine is called to do unit
* conversion, and to evaluate the gas temperature.
*/
int main(int argc, char **argv)
{
char input_fname[200];
int type, files, i, ok;
int quiteon= 0;
char *p;
if(argc<2)
{
printf("\n>readsnap <filename> <[option]>\n\n");
printf("options\n");
printf("-------\n");
printf(" -info prints byte information for all fields present\n");
printf(" -h only the header information is printed to the screen\n");
printf(" -m prints the mass of a particle when displaying other information\n");
printf(" -id prints the ID for each particle.\n");
printf(" -pot prints the Potential for every particle.\n");
printf(" -tm prints the total mass of each type\n");
printf(" -gm prints the gas mass\n");
printf("\n\n");
exit(0);
}
files=1; /* number of files per snapshot */
ShowHeader=0;
ShowMass=0;
ShowId=0;
ShowPot=0;
Reorder=0;
PrintDefault=0;
SnapFile=0;
strcpy(input_fname, argv[1]);
/* problem, what if we give a path rather then just filename
if(!strncmp(input_fname, "snapshot", 8)) SnapFile = 1; */
if(strstr(input_fname,"snapshot")!=0) SnapFile = 1;
if(argc==2) PrintDefault = 1;
for(i=2; i<argc; i++)
{
ok = 0;
if(!(strcmp(argv[i],"-info"))) ok = SnapInfo = 1;
if(!(strcmp(argv[i],"-h"))) ok = ShowHeader = 1;
if(!(strcmp(argv[i],"-tm"))) ok = PrintTotalMass =1;
if(!(strcmp(argv[i],"-gm"))) ok = PrintGasMass = quiteon= 1;
if(!(strcmp(argv[i],"-m"))) PrintDefault = ShowMass = 1;
if(!(strcmp(argv[i],"-id"))) PrintDefault = ShowId = 1;
if(!(strcmp(argv[i],"-pot"))) PrintDefault = ShowPot = 1;
if((ok==0) && (PrintDefault==0))
{
printf("Unknown parameter: %s\n",argv[i]);
printf("Please use correct parameters.\n");
exit(0);
}
}
ok= load_snapshot(input_fname, files, quiteon, ShowHeader);
if(Reorder) reordering(); /* call this routine only if your ID's are set properly */
if(!ShowHeader) unit_conversion(); /* optional stuff */
if(PrintDefault) write_std_to_file();
if(ShowHeader) write_header();
if(PrintTotalMass) print_totalmass();
if(PrintGasMass) print_gasmass();
return(0);
}
/* Here we load a snapshot file. It can be distributed
* onto several files (for files>1).
* The particles are brought back into the order
* implied by their ID's.
* A unit conversion routine is called to do unit
* conversion, and to evaluate the gas temperature.
*/
int main(int argc, char **argv)
{
char dir[256];
char *snapshot_fname = NULL,
*fof_fname = NULL,
*groups_fname = NULL,
*gmap_fname = NULL;
int files;
float fPeriodf1,fPeriodf2,fPeriodf3,fEpsf;
int i,nf;
int *pmap; /* A map between a particle and the group it is in */
int nGroups, nMapGroups, Ngroups;
group_t *groups;
gmap_t *gmap;
int mode = DO_NOTHING;
/*=======================================================================
* Parse command line arguments
*=====================================================================*/
for (i=1; i < argc; i++)
{
if (!strcmp("--make-fof", argv[i]))
{
if (mode != DO_NOTHING) help();
if (++i < argc) snapshot_fname = argv[i]; else help();
if (++i < argc) fof_fname = argv[i]; else help();
mode = MAKE_FOF;
}
else if (!strcmp("--make-groups", argv[i]))
{
if (mode != DO_NOTHING) help();
if (++i < argc) snapshot_fname = argv[i]; else help();
if (++i < argc) fof_fname = argv[i]; else help();
mode = MAKE_GROUPS;
}
else if (!strcmp("--make-tree", argv[i]))
{
if (mode != DO_NOTHING) help();
if (++i < argc) groups_fname = argv[i]; else help();
if (++i < argc) snapshot_fname = argv[i]; else help();
if (++i < argc) fof_fname = argv[i]; else help();
if (++i < argc) gmap_fname = argv[i]; else help();
mode = MAKE_TREE;
}
else if (!strcmp("-M", argv[i]))
{
if (++i < argc) MassMin = atof(argv[i]); else help();
if (++i < argc) MassMax = atof(argv[i]); else help();
}
else if (!strcmp("-nmin", argv[i]))
{
if (++i < argc) nMin = atof(argv[i]); else help();
}
}
/*=======================================================================
* Check that the user gave us sensible parameters
*=====================================================================*/
if (mode == DO_NOTHING) help();
/*=======================================================================
* Load in the snapshot (GADGET format)
*=====================================================================*/
files=1; /* number of files per snapshot */
fprintf(stderr, "Loading snapshot %s.\n", snapshot_fname);
load_snapshot(snapshot_fname, files);
printf("Npart: %d; Time: %lf; Redshift: %lf\n",NumPart,header1.time, header1.redshift);
nf=NumPart;
printf("First particle: %f %f %f \n",P[1].Pos[0],P[1].Pos[1],P[1].Pos[2]);
printf("Medium particle: %f %f %f \n",P[nf/2].Pos[0],P[nf/2].Pos[1],P[nf/2].Pos[2]);
printf("Last particle: %f %f %f \n",P[nf].Pos[0],P[nf].Pos[1],P[nf].Pos[2]);
/*=======================================================================
* Prepare to either create or load the FOF data
*=====================================================================*/
fEpsf = header1.BoxSize/ pow( NumPart, 1./3.);
printf("Distanza interparticellare media: %f\n",fEpsf);
fEpsf *= 0.2;
/* fEpsf *= 0.15; */
/* fEpsf *= 0.1; */
fPeriodf1=fPeriodf2=fPeriodf3=(float) header1.BoxSize;
pmap=malloc((NumPart+1)*sizeof(int));
if(pmap==NULL)
{
printf("Errore di allocazione memoria indici.\n");
exit(-1);
}
/* LE UNITA' NATURALI GADGET LAVORANO IN 10^10 MSOL. SE SONO STATE
CAMBIATE, OCCORRE MODIFICARE QUI */
if (MassMin != -1 && MassMax != -1)
{
fprintf(stderr, "Mass range: [%2.2e,%2.2e]\n", MassMin, MassMax);
MassMin /= UdM; MassMax /= UdM;
}
else
{
fprintf(stderr, "Mass range: Unbounded\n");
MassMin = 0;
MassMax = 1e33;
}
switch (mode)
{
case MAKE_FOF:
fprintf(stderr, "Making FOFs.\n");
fof_(fEpsf,fPeriodf1,fPeriodf2,fPeriodf3,NumPart,P,pmap);
write_pmap(fof_fname, fEpsf,fPeriodf1,fPeriodf2,fPeriodf3,NumPart,pmap);
break;
case MAKE_GROUPS:
fprintf(stderr, "Making Groups.\n");
if (read_pmap(fof_fname, fEpsf,fPeriodf1,fPeriodf2,fPeriodf3,NumPart,pmap))
exit(1);
EvalGroups0(pmap,snapshot_fname);
break;
case MAKE_TREE:
fprintf(stderr, "Making Progenitor Trees.\n");
if (read_groups(groups_fname, &groups, &nGroups)) exit(1);
if (read_gmap(gmap_fname, &gmap, &nMapGroups)) exit(1);
/*=======================================================================
* Sanity check that the group files match up.
*=====================================================================*/
#if 0
if (nGroups != nMapGroups)
{
fprintf(stderr,
"Mismatched number of groups between group and map files (%i != %i).\n",
nGroups, nMapGroups);
exit(1);
}
#endif
#if 0
int nPartInGroups=0, nPartInMap=0;
for (i=0; i < nGroups; i++)
{
nPartInGroups += groups[i].npart;
nPartInMap += gmap[i].npart;
}
fprintf(stderr, "HERE 4\n");
if (nGroups != nMapGroups)
{
fprintf(stderr, "Mismatched number of particles between group and map files.\n");
exit(1);
}
#endif
/*=======================================================================
* Now load the particle->group map.
*=====================================================================*/
if (read_pmap(fof_fname, fEpsf,fPeriodf1,fPeriodf2,fPeriodf3,NumPart,pmap))
exit(1);
//sonidx=malloc( (NumPart+1)*sizeof(int));
//npson=load_son_idx(sonidx, index_fname);
//if(npson <= 0) { printf("ERROR: group non find.\n"); exit(-1); }
//printf("<<Son>> group with %d particles loaded.\n",npson);
mkdir("GROUPS", -1);
assert(!chdir("GROUPS"));
Ngroups = EvalGroups1(pmap);
chdir("..");
gmap_t *gmap2 = (gmap_t *)calloc(Ngroups+1, sizeof(gmap_t));
for (i=1; i < NumPart+1; i++)
gmap2[pmap[i]].npart++;
for (i=0; i < Ngroups+1; i++)
{
gmap2[i].ps = (int *)malloc(gmap2[i].npart * sizeof(int));
assert(gmap2[i].ps != NULL);
gmap2[i].npart = 0;
}
for (i=1; i < NumPart+1; i++)
{
gmap2[pmap[i]].ps[ gmap2[pmap[i]].npart++ ] = i;
}
#if 1
printf("Finding progenitors with mass %%: %f\n",PROGPERC);
for (i=0; i < nGroups; i++)
{
//fprintf(stderr, "Group %i [Mass: %f]\n", i, groups[i].Mass);
#if 1
if (MassMin != -1 && MassMax != -1)
{
if (!(MassMin < groups[i].Mass && groups[i].Mass < MassMax))
{
fprintf(stderr, "Outside mass range. Group %i/%i.\n", i+1, nGroups+1);;
continue;
}
}
snprintf(dir, 256, "%05i", groups[i].id);
fprintf(stderr, "Making directory %s. Group %i/%i.\n", dir, i+1, nGroups+1);;
mkdir(dir, -1);
assert(!chdir(dir));
int *ps = NULL;
int npart = 0;
int j;
for (j=0; j < nMapGroups; j++)
{
if (groups[i].id == gmap[j].gid)
{
assert(ps == NULL);
ps = gmap[j].ps;
npart = gmap[j].npart;
assert(groups[i].npart == gmap[j].npart);
/* Intentionally not breaking here to check the assert()'ion if there
* is somehow a duplicate groups. */
}
}
assert(ps != NULL);
EvalProgenitors(snapshot_fname, pmap, ps, npart, Ngroups, gmap2, Ngroups);
chdir("..");
#endif
}
#endif
break;
default:
fprintf(stderr, "Unknown internal mode: %i\n", mode);
exit(1);
}
return 0;
}
/* Here we load a snapshot file. It can be distributed
* onto several files (for files>1).
* The particles are brought back into the order
* implied by their ID's.
* A unit conversion routine is called to do unit
* conversion, and to evaluate the gas temperature.
*/
int main(int argc, char **argv)
{
char path[200], input_fname[200], output_fname[200], basename[200], basenameout[200];
int i, k=0, j, n, type, snapshot_number, files, Ngas, random, ncount, ncounthalo1, ncount2, halo;
double x,y,z,x1,y1,z1, delr;
double nh, nhmax, mass, mmax, dis, disAU, xmax, ymax, zmax, sl, masstot, temp, tmax, h2, h2max, gam, gammin;
double kB, G;
double massHIT, diskmass, massin=0.0, massout=0.0;
double mass_sink1, mass_sink2, mass_sink3, mass_sink4, mass_tot;
double dis12, dis13, x_com, y_com, z_com, vx_com, vy_com, vz_com, vx1, vy1, vz1, vx2, vy2, vz2, vx3, vy3, vz3, vx4, vy4, vz4;
double sinkposx1, sinkposy1, sinkposz1, sinkposx2, sinkposy2, sinkposz2, sinkposx3, sinkposy3, sinkposz3, sinkposx4, sinkposy4, sinkposz4;
double num, numz, tempz, vz, rhoz, amom, amomtot, amomtotx, amomtoty, amomtotz, amomx, amomy, amomz, amomx1, amomx2, amomy1, amomy2, amomz1, amomz2;
double xfac, vrad, vrot, vrotx, vroty, vrotz, omega, nh_avg, temp_avg, vrad_avg, vrot_avg, omega_avg, num_tot;
double xtimesm, ytimesm, ztimesm, vxtimesm, vytimesm, vztimesm;
double xCOM, yCOM, zCOM, vxCOM, vyCOM, vzCOM, jzcent, jnum;
double m_enc_arr[200], d_arr[200], mass_enc;
int ID_sink1, ID_sink2, ID_sink3, ID_sink4, sinknum;
FILE *outfile;
FILE *outfile2;
sprintf(path, "/nobackupp1/astacy/hires");
//sprintf(path, "/nobackupp1/astacy/");
//sprintf(path, "/nobackupp1/astacy/binHR");
halo = 0;
if(halo == 0)
{
//sprintf(basename, "hires_test10");
sprintf(basename, "hires_test10b");
sprintf(basename, "hires3");
sprintf(basenameout, "snaphires_test10");
//jnum = 228;
jnum = 2;
}
if(halo == 1)
{
sprintf(basename, "bin_HR1");
sprintf(basenameout, "snapbin_HR1");
//jnum = 228;
jnum = 6;
}
if(halo == 2)
{
sprintf(basename, "bin_HR2");
sprintf(basenameout, "snapbin_HR2");
//jnum = 207;
jnum = 5;
}
if(halo == 3)
{
sprintf(basename, "bin_HR3");
sprintf(basenameout, "snapbin_HR3");
//jnum = 206;
jnum = 7;
}
if(halo == 4)
{
sprintf(basename, "bin_HR4");
sprintf(basenameout, "snapbin_HR4");
//jnum = 204;
jnum = 7;
}
if(halo == 5)
{
sprintf(basename, "bin_HR5");
sprintf(basenameout, "snapbin_HR5");
//jnum = 209;
jnum = 7;
}
if(halo == 6)
{
sprintf(basename, "bin_HR6");
sprintf(basenameout, "snapbin_HR6b");
//jnum = 224;
jnum = 7;
}
if(halo == 7)
{
sprintf(basename, "bin_HR7b");
sprintf(basenameout, "snapbin_HR7b");
//jnum = 655;
jnum = 9;
//jnum=38;
}
if(halo == 8)
{
sprintf(basename, "bin_HR8");
sprintf(basenameout, "snapbin_HR8");
//jnum = 219;
jnum = 7;
}
if(halo == 9)
{
sprintf(basename, "bin_HR9");
sprintf(basenameout, "snapbin_HR9");
//jnum = 207;
jnum = 5;
}
if(halo == 10)
{
//sprintf(basename, "bin_HR10");
sprintf(basename, "bin_HR10_alt");
sprintf(basenameout, "snapbin_HR10");
//jnum = 241;
//jnum = 7;
jnum=8;
//jnum = 24;
}
for(j=2;j<=50;j=j+1){
//for(j=jnum;j<=jnum;j=j+100){
snapshot_number= j; /* number of snapshot */
files=1; /* number of files per snapshot */
kB = 1.38e-16;
G = 6.67e-8;
diskmass = 0.0;
sprintf(input_fname, "%s/%s_%03d", path, basename, snapshot_number);
sprintf(output_fname, "%s_disk.dat",basename);
Ngas = load_snapshot(input_fname, files);
ID_sink1 = 4352905;
ID_sink2 = 4333881;
sinknum = 0;
/* reordering();*/ /* call this routine only if your ID's are set properly */
printf("hello line 187\n");
unit_conversion();
printf("hello line 191\n");
nh_avg= vrad_avg = vrot_avg = omega_avg = 0;
printf("hello line 195\n");
temp_avg=0;
num_tot=0;
h2max=0;
masstot=0;
mmax=0;
xtimesm = 0.0;
ytimesm = 0.0;
ztimesm = 0.0;
vxtimesm = 0.0;
vytimesm = 0.0;
vztimesm = 0.0;
for(i = 0; i < Ngas; i++)
{
if(Id[i] == ID_sink1)
{
sinkposx1 = P[i].Pos[0];
sinkposy1 = P[i].Pos[1];
sinkposz1 = P[i].Pos[2];
vx1 = P[i].Vel[0];
vy1 = P[i].Vel[1];
vz1 = P[i].Vel[2];
mass_sink1 = P[i].Mass*1.e10/0.7;
printf("Found the sink! mass= %lg, nh = %lg\n", mass_sink1, P[i].nh);
}
if(P[i].nh > 1e9)
{
diskmass = diskmass + (P[i].Mass*1.e10/0.7);
xtimesm = xtimesm + P[i].Pos[0]*(P[i].Mass*1.e10/0.7);
ytimesm = ytimesm + P[i].Pos[1]*(P[i].Mass*1.e10/0.7);
ztimesm = ztimesm + P[i].Pos[2]*(P[i].Mass*1.e10/0.7);
vxtimesm = vxtimesm + P[i].Vel[0]*(P[i].Mass*1.e10/0.7);
vytimesm = vytimesm + P[i].Vel[1]*(P[i].Mass*1.e10/0.7);
vztimesm = vztimesm + P[i].Vel[2]*(P[i].Mass*1.e10/0.7);
}
}
xCOM = xtimesm/diskmass;
yCOM = ytimesm/diskmass;
zCOM = ztimesm/diskmass;
vxCOM = vxtimesm/diskmass;
vyCOM = vytimesm/diskmass;
vzCOM = vztimesm/diskmass;
printf("%15.11g %15.11g %15.11g\n", xCOM, yCOM, zCOM);
printf("%15.11g %15.11g %15.11g\n", vxCOM, vyCOM, vzCOM);
// if(j>=4)
// {
sinkposx1 = xCOM;
sinkposy1 = yCOM;
sinkposz1 = zCOM;
mass_sink1 = diskmass;
vx1 = vxCOM;
vy1 = vyCOM;
vz1 = vzCOM;
// }
diskmass=0.0;
ncount=0;
for(n=0; n<200; n++)
{
m_enc_arr[n] = 0.0;
d_arr[n] = (double(n)/199.0)*10000.0;
printf("d_arr[%d] = %lg\n", n, d_arr[n]);
}
for(i = 0; i < Ngas; i++)
{
if(P[i].nh > 1.e8)
{
dis = pow(((P[i].Pos[0]-sinkposx1)*(P[i].Pos[0]-sinkposx1) + (P[i].Pos[1]-sinkposy1)*(P[i].Pos[1]-sinkposy1) + (P[i].Pos[2]-sinkposz1)*(P[i].Pos[2]-sinkposz1)), 0.5);
dis=dis*1.e3*Time/(0.7); //dis is in pc
disAU = dis*206264.8060;
for(n=0; n<200; n++)
{
if(disAU < d_arr[n] /*|| P[i].sink > 0.5*/)
m_enc_arr[n] = m_enc_arr[n] + P[i].Mass*1.e10/0.7;
}
}
}
for(n=0; n<200; n++)
{
printf("m_enc_arr[%d] = %lg\n", n, m_enc_arr[n]);
}
for(i = 0; i < Ngas; i++)
{
P[i].Vel[0] = P[i].Vel[0] - vx1;
P[i].Vel[1] = P[i].Vel[1] - vy1;
P[i].Vel[2] = P[i].Vel[2] - vz1;
amomx = (P[i].Pos[1]-sinkposy1)*P[i].Vel[2] - (P[i].Pos[2]-sinkposz1)*P[i].Vel[1];
amomy = (P[i].Pos[2]-sinkposz1)*P[i].Vel[0] - (P[i].Pos[0]-sinkposx1)*P[i].Vel[2];
amomz = (P[i].Pos[0]-sinkposx1)*P[i].Vel[1] - (P[i].Pos[1]-sinkposy1)*P[i].Vel[0];
amomx = amomx*pow(Time, 0.5)*1.e5*3.086e18*1.e3*Time/(0.7); //convert to cgs units
amomy = amomy*pow(Time, 0.5)*1.e5*3.086e18*1.e3*Time/(0.7);
amomz = amomz*pow(Time, 0.5)*1.e5*3.086e18*1.e3*Time/(0.7);
amom = pow(amomx*amomx + amomy*amomy + amomz*amomz, 0.5);
dis = pow(((P[i].Pos[0]-sinkposx1)*(P[i].Pos[0]-sinkposx1) + (P[i].Pos[1]-sinkposy1)*(P[i].Pos[1]-sinkposy1) + (P[i].Pos[2]-sinkposz1)*(P[i].Pos[2]-sinkposz1)), 0.5);
//dis = pow(((P[i].Pos[0]-sinkposx1)*(P[i].Pos[0]-sinkposx1) + (P[i].Pos[2]-sinkposz1)*(P[i].Pos[2]-sinkposz1)), 0.5);
dis=dis*1.e3*Time/(0.7); //dis is in pc
disAU = dis*206264.8060;
dis=dis*3.086e18; //dis in now in cm
vrad = (P[n].Vel[0]*(P[n].Pos[0]-sinkposx1) + P[n].Vel[1]*(P[n].Pos[1]-sinkposy1) + P[n].Vel[2]*(P[n].Pos[2]-sinkposz1))/pow(((P[n].Pos[0]-sinkposx1)*(P[n].Pos[0]-sinkposx1) + (P[n].Pos[1]-sinkposy1)*(P[n].Pos[1]-sinkposy1) + (P[n].Pos[2]-sinkposz1)*(P[n].Pos[2]-sinkposz1)), 0.5);
vrad = vrad*pow(Time, 0.5);
vrotx = (P[n].Pos[1]-sinkposy1)*P[n].Vel[2] - (P[n].Pos[2]-sinkposz1)*P[n].Vel[1];
vroty = (P[n].Pos[2]-sinkposz1)*P[n].Vel[0] - (P[n].Pos[0]-sinkposx1)*P[n].Vel[2];
vrotz = (P[n].Pos[0]-sinkposx1)*P[n].Vel[1] - (P[n].Pos[1]-sinkposy1)*P[n].Vel[0];
vrot = pow(vrotx*vrotx + vroty*vroty + vrotz*vrotz, 0.5);
vrot = vrot*pow(Time, 0.5)/pow(((P[n].Pos[0]-sinkposx1)*(P[n].Pos[0]-sinkposx1) + (P[n].Pos[1]-sinkposy1)*(P[n].Pos[1]-sinkposy1) + (P[n].Pos[2]-sinkposz1)*(P[n].Pos[2]-sinkposz1)), 0.5);
omega = vrot/(dis/1.e5); // pi factors CANCEL OUT -- 2 pi r to get circumference CANCELS with the 2 pi radians per circumference
if(P[i].nh > 1.e8)
{
mass_enc = m_enc_arr[0];
for(n=0; n<200; n++)
{
if(disAU > d_arr[n])
mass_enc = m_enc_arr[n];
}
//jzcent = pow(6.67e-8 * mass_sink1 * 1.98892e33*dis, 0.5);
jzcent = pow(6.67e-8 * mass_enc * 1.98892e33*dis, 0.5);
}
//if((fabs(amom - jzcent) <= 0.5*jzcent && P[i].nh > 1.e8) && P[i].sink < 0.5)
//if((fabs(amom - jzcent) <= 0.5*jzcent && P[i].nh > 1.e8) || P[i].sink > 0.5)
if(P[i].nh > 1.e9 && P[i].H2I > 1.e-3 || P[i].sink > 0.5)
//if(P[i].nh > 1.e9 && P[i].H2I > 1.e-3 && P[i].sink < 0.5)
//if(P[i].nh > 1.e9 && P[i].H2I <= 1.e-3 && P[i].sink < 0.5)
//if(amom > jzcent && P[i].nh > 1.e8 && P[i].sink < 0.5)
{
//diskmass = diskmass + (P[i].Mass*1.e10/0.7);
//nh_avg = nh_avg + P[i].nh*(P[i].Mass/1.03395e-12);
//temp_avg = temp_avg + P[i].Temp*(P[i].Mass/1.03395e-12);
//num_tot = num_tot + (P[i].Mass/1.03395e-12);
diskmass = diskmass + (P[i].Mass*1.e10/0.7);
//nh_avg = nh_avg + P[i].nh;
nh_avg = nh_avg +(1- 2.*P[i].H2I);
if(P[i].sink < 0.5)
temp_avg = temp_avg + P[i].Temp;
//if(P[i].Temp > 6000)
// printf("ID = %d nh = %lg, temp = %lg, elec %lg, H2 = %lg sink = %lg\n", Id[i], P[i].nh, P[i].Temp, P[i].HII, P[i].H2I, P[i].sink);
vrad_avg = vrad_avg + fabs(vrad);
vrot_avg = vrot_avg + vrot;
omega_avg = omega_avg + omega;
num_tot = num_tot + 1.0;
if(P[i].sink > 0.5)
sinknum++;
ncount++;
//}
}
}
//fclose(outfile2);
printf("temp = %lg, num_tot = %lg, temp_avg = %lg\n", temp_avg, num_tot, temp_avg/num_tot);
//outfile=fopen("disk_tot_h2_ng9_nr6e_alt", "a");
//outfile=fopen("disk_nosink_h2_ng9_nr6e_alt", "a");
//outfile=fopen("disk_hot_ng9_nr6e_alt", "a");
//outfile=fopen("disk_test", "a");
outfile=fopen(output_fname, "a");
fprintf(outfile, "%15.11g %15.11g %15.11g %15.11g %15.11g %15.11g %15.11g %d\n", Time, diskmass, nh_avg/num_tot, temp_avg/num_tot, vrad_avg/num_tot, vrot_avg/num_tot, omega_avg/num_tot, sinknum);
fclose(outfile);
outfile=fopen(output_fname2, "a");
fprintf(outfile, "%15.11g %15.11g \n", Time, fshield);
fclose(outfile);
free(P);
}
do_what_you_want();
}
int main(int argc, char **argv)
{
int i, j, snapshot_number;
/* Read input and output files */
i=1;
if (argc==1) usage();
while (i<argc)
{
if (!strcmp(argv[i],"-f"))
{
i++;
strcpy(filename,argv[i]);
i++;
}
else if (*argv[i]!='-')
{
strcpy(filename,argv[i]);
i++;
}
else if (!strcmp(argv[i],"-i"))
{
i++;
strcpy(filename,argv[i]);
i++;
}
else if (!strcmp(argv[i],"-use"))
{
i++;
use_cm=atoi(argv[i]);
i++;
}
else if (!strcmp(argv[i],"-ind"))
{
i++;
use_ind = 1;
}
else if (!strcmp(argv[i],"-s"))
{
i++;
StarMassThreshold = atof(argv[i]);
i++;
}
else if (!strcmp(argv[i],"-sfid"))
{
i++;
sfid = atoi(argv[i]);
i++;
}
else if (!strcmp(argv[i],"-m"))
{
i++;
TotalMassThreshold = atof(argv[i]);
i++;
}
else usage();
}
char snap_number_dum[4];
sprintf(snap_number_dum, "%.*s", 3, &filename[ strlen(filename)-3]);
snapshot_number = atoi( snap_number_dum );
printf("num %d\n", snapshot_number);
load_groups(snapshot_number);
load_group_ids(snapshot_number);
load_snapshot(filename, snapshot_number);
write_ascii(snapshot_number);
return 0;
}
int main(int argc, char** argv) {
char *infile;
infile=argv[1];
char *outfile;
outfile=argv[2];
float clumpx, clumpy, clumpz;
sscanf (argv[3],"%f",&clumpx);
sscanf (argv[4],"%f",&clumpy);
sscanf (argv[5],"%f",&clumpz);
if(argc!=6) {
printf("Usage: ./cutout <infile> <outfile> <x coordinate of clump [Mpc]> <y coordinate> <z coordinate>\n");
return 0;
}
printf("Box centered around x: %g y: %g z: %g [Mpc] \n", clumpx, clumpy, clumpz);
/* load snapshot file */
io_header header;
particle_data * P;
int nTot;
nTot = load_snapshot(infile, &header, &P);
/* output information about the simulation */
printf(">> Output from Header \n");
printf("Boxsize of Simulation: %g\n", header.BoxSize);
printf("Number of gas particles: %i\n", header.npart[0]);
printf("Number of high-res dm particles: %i\n", header.npart[1]);
printf("Number of low-res dm particles: %i\n", header.npart[5]);
printf("Number of star particles: %i\n", header.npart[4]);
/*cutout region around the center */
float extent=20000;
clumpx=clumpx*1000; // Mpc -> kpc
clumpy=clumpy*1000; // Mpc -> kpc
clumpz=clumpz*1000; // Mpc -> kpc
/* check if the cutout region does not extend over boundaries */
if(header.BoxSize-extent/2.<clumpx || extent/2.>clumpx) {
printf("Out of bound in x-dimension - chose a more centered clump \n" );
printf(">> ABORTING \n" );
return 0;
}
if(header.BoxSize-extent/2.<clumpy || extent/2.>clumpy) {
printf("Out of bound in y-dimension - chose a more centered clump \n" );
printf(">> ABORTING \n" );
return 0;
}
if(header.BoxSize-extent/2.<clumpz || extent/2.>clumpz) {
printf("Out of bound in z-dimension - chose a more centered clump \n" );
printf(">> ABORTING \n" );
return 0;
}
int i;
/* loop over all particles */
int counter = 0;
float center = header.BoxSize/2;
for (i=0;i<nTot;i++) {
/* test if particle is within our desired volume */
if(P[i].Pos[0]<clumpx+extent/2 && P[i].Pos[0]>clumpx-extent/2 &&
P[i].Pos[1]<clumpy+extent/2 && P[i].Pos[1]>clumpy-extent/2 &&
P[i].Pos[2]<clumpz+extent/2 && P[i].Pos[2]>clumpz-extent/2) {
/* shift coordinates */
P[i].Pos[0]-= clumpx-extent/2;
P[i].Pos[1]-= clumpy-extent/2;
P[i].Pos[2]-= clumpz-extent/2;
P[counter] = P[i];
counter++;
}
}
int counterType [6] = {0,0,0,0,0,0};
/* get the numbers of the particle types */
for (i=0;i<counter;i++) {
if(P[i].Type==0) {
counterType[0]+=1;
}
if(P[i].Type==1) {
counterType[1]+=1;
}
if(P[i].Type==2) {
counterType[2]+=1;
}
if(P[i].Type==3) {
counterType[3]+=1;
}
if(P[i].Type==4) {
counterType[4]+=1;
}
if(P[i].Type==5) {
counterType[5]+=1;
}
}
header.npart[0]=counterType[0];
header.npartTotal[0]=counterType[0];
header.npart[1]=counterType[1];
header.npartTotal[1]=counterType[1];
header.npart[4]=counterType[4];
header.npartTotal[4]=counterType[4];
header.npart[5]=counterType[5];
header.npartTotal[5]=counterType[5];
header.BoxSize = extent;
/* output information about the simulation */
printf(">> Output Cutout Box\n");
printf("Boxsize: %g\n", header.BoxSize);
printf("Number of gas particles: %i\n", header.npart[0]);
printf("Number of high-res dm particles: %i\n", header.npart[1]);
printf("Number of low-res dm particles: %i\n", header.npart[5]);
printf("Number of star particles: %i\n", header.npart[4]);
printf("Box centered around x: %g y: %g z: %g \n", clumpx, clumpy, clumpz);
/* write reduced snapshot file */
write_snapshot(outfile, &header, P);
return 0;
}
/* Here we load a snapshot file. It can be distributed
* onto several files (for files>1).
* The particles are brought back into the order
* implied by their ID's.
* A unit conversion routine is called to do unit
* conversion, and to evaluate the gas temperature.
*/
int main(int argc, char **argv)
{
char path[200], input_fname[200], output_fname[200], output_fname2[200], basename[200], basenameout[200];
int i, k=0, j, n, type, snapshot_number, files, Ngas, random, ncount, ncounthalo1, arrnum=200;
double x,y,z,x1,y1,z1, delr;
double nh, nhmax, mass, mmax, dis, dis_sim, disAU, xmax, ymax, zmax, sl, masstot, temp, tmax, h2, h2max, gam, gammin;
int IDmax;
double rho_b, rho_DM[arrnum], rho_vir, r_vir, v_vir;
double kB, G;
double bind, diskmass, massin=0.0, massout=0.0;
double vrad, vrot, disAUxy, disAUz, disAUxyz, vx_com, vy_com, vz_com, vx1, vy1, vz1, vx2, vy2, vz2, vx3, vy3, vz3, vx4, vy4, vz4;
double sinkposx1, sinkposy1, sinkposz1, sinkposx2, sinkposy2, sinkposz2;
double sinkposx3, sinkposy3, sinkposz3, sinkposx4, sinkposy4, sinkposz4;
double num, amom, amom_arr[arrnum], amomtot, amomx_tot, amomy_tot;
double amomz_tot, amomx, amomy, amomz, amomx1, amomx2, amomy1, amomy2, amomz1, amomz2;
double xfac, yfac, zfac, kfloat, nh_avg, num_tot, omega, omega0, nthresh;
double xtimesm, ytimesm, ztimesm, vxtimesm, vytimesm, vztimesm;
double xCOM, yCOM, zCOM, vxCOM, vyCOM, vzCOM, jzcent;
double temp_arr[arrnum], mbe_arr[arrnum], omega_arr[arrnum];
double m_enc_arr[arrnum], d_arr[arrnum], mass_enc, n_arr[arrnum], n_arr2[arrnum], surf_dens_arr[arrnum];
double rmin, rmax, nmin, nmax, numdens_arr[arrnum];
double vradx, vrady, vradz, vrotx, vroty, vrotz, vrad_arr[arrnum], vrot_arr[arrnum], dens_arr[arrnum], c_s_arr[arrnum];
double vradx_arr[arrnum], vrady_arr[arrnum], vradz_arr[arrnum], vrotx_arr[arrnum], vroty_arr[arrnum], vrotz_arr[arrnum];
double velx, vely, velz, velx_arr[arrnum], vely_arr[arrnum], velz_arr[arrnum];
double mdm_enc_arr[arrnum], turb_arr[arrnum], disx, disy, disz;
double KE, KE_tot, PE, PE_tot, vel, spin_param, ncount_doub;
int ID_sink1, ID_sink2, ID_sink3, ID_sink4, sinknumk;
FILE *outfile, *outfile2;
sprintf(path, "/work/00863/minerva/bin_zoom");
//sprintf(basename, "ifront_hiacc");
//sprintf(path, "/nobackupp1/astacy/binHR");
//sprintf(basename, "bin_HR1");
//sprintf(basename, "bin_HR7");
//sprintf(basename, "bin_HR10");
//sprintf(path, "/nobackupp1/astacy/bin_zoom");
//sprintf(basename, "bin_zoom1");
//sprintf(basename, "bin_zoom2");
//sprintf(basename, "bin_zoom3");
//sprintf(basename, "bin_zoom4");
//sprintf(basename, "bin_zoom5");
//sprintf(basename, "bin_zoom6");
//sprintf(basename, "bin_zoom7");
//sprintf(basename, "bin_zoom9");
//sprintf(basename, "bin_zoom10");
//for(j=453;j<=453;j++)
//for(j=6;j<=6;j++)
//for(j=9;j<=9;j++)
//for(j=1;j<=1;j++)
//for(j=90;j<=90;j++)
//for(j=77;j<=77;j++)
//for(j=86;j<=86;j++)
//for(j=127;j<=127;j++)
//for(j=112;j<=112;j++)
//for(j=139;j<=139;j++)
//for(j=91;j<=91;j++)
//for(j=113;j<=113;j++)
//for(j=101;j<=101;j++)
/*
sprintf(path, "/scratch/00863/minerva");
sprintf(basename, "bin_zoom9_new_ref3");
for(j=6800;j<=6800;j=j+20)
*/
sprintf(path, "/scratch/00863/minerva");
sprintf(basename, "bin_zoom10_new_ref3");
for(j=5600;j<=5600;j=j+20)
//for(j=40;j<=80;j=j+20)
{
snapshot_number= j; /* number of snapshot */
files=1; /* number of files per snapshot */
sprintf(input_fname, "%s/%s_%03d", path, basename, snapshot_number);
//sprintf(input_fname, "%s/%s_%04d", path, basename, snapshot_number);
Ngas = load_snapshot(input_fname, files);
sprintf(output_fname, "%s_mini_%03d.dat",basename, snapshot_number);
if(j > 999) sprintf(output_fname, "%s_mini_%04d.dat",basename, snapshot_number);
/* reordering();*/ /* call this routine only if your ID's are set properly */
rho_b = 2.94e-30; //background density of the universe
unit_conversion();
nh_avg=ncount_doub=0;
num_tot=0;
h2max=nhmax=mmax=kfloat=0.0;
xtimesm = ytimesm = ztimesm = 0.0;
vxtimesm = vytimesm = vztimesm = 0.0;
vxCOM=vyCOM=vzCOM=xCOM=yCOM=zCOM=0;
amomx_tot = amomy_tot = amomz_tot = 0;
amomtot = omega0 = masstot = 0.0;
nthresh = 1.e4;
for(i = 0; i < Ngas; i++)
{
if(P[i].nh > nhmax /*&& P[i].sink < 0.5*/)
{
nhmax = P[i].nh;
IDmax = P[i].Id;
xmax = P[i].Pos[0];
ymax = P[i].Pos[1];
zmax = P[i].Pos[2];
mmax = P[i].Mass;
}
}
printf("xmax = %lg ymax = %lg zmax = %lg mmax = %lg nhmax = %lg\n", xmax, ymax, zmax, mmax, nhmax);
for(n=0;n<=Ngas;n++)
{
nh = P[n].nh;
dis = pow(((P[n].Pos[0]-xmax)*(P[n].Pos[0]-xmax) + (P[n].Pos[1]-ymax)*(P[n].Pos[1]-ymax) + (P[n].Pos[2]-zmax)*(P[n].Pos[2]-zmax)), 0.5);
dis=dis*1.e3*Time/(0.7);
disx = fabs((P[n].Pos[0]-xmax))*1.e3*Time/(0.7);
disy = fabs((P[n].Pos[1]-ymax))*1.e3*Time/(0.7);
disz = fabs((P[n].Pos[2]-zmax))*1.e3*Time/(0.7);
disAU=dis*206264.806;
if(disx < width && disy < width && disz < width)
{
vxCOM = vxCOM + P[n].Vel[0]*P[n].Mass;
vyCOM = vyCOM + P[n].Vel[1]*P[n].Mass;
vzCOM = vzCOM + P[n].Vel[2]*P[n].Mass;
xCOM = xCOM + P[n].Pos[0]*P[n].Mass;
yCOM = yCOM + P[n].Pos[1]*P[n].Mass;
zCOM = zCOM + P[n].Pos[2]*P[n].Mass;
ncount_doub = ncount_doub + P[n].Mass;
}
}
vx1 = vxCOM/ncount_doub;
vy1 = vyCOM/ncount_doub;
vz1 = vzCOM/ncount_doub;
//vx = vy = vz = 0;
sinkposx1 = xmax;
sinkposy1 = ymax;
sinkposz1 = zmax;
printf("vx1 = %lg, vy1 = %lg, vz1 = %lg, sinkposx1 = %lg, sinkposy1 = %lg, sinkposz1 = %lg\n", vx1, vy1, vz1, sinkposx1, sinkposy1, sinkposz1);
diskmass=0.0;
ncount=0;
ncount_doub=0.;
rmin = 100.;
rmax = 3e8;
nmin = 1.e-2;
nmax = 1.e12;
for(n=0; n<arrnum; n++)
{
m_enc_arr[n] = amom_arr[n] = n_arr[n] = n_arr2[n] = surf_dens_arr[n] = c_s_arr[n] = 0.0;
temp_arr[n] = mbe_arr[n] = omega_arr[n] = 0.0;
vrot_arr[n] = vrotx_arr[n] = vroty_arr[n] = vrotz_arr[n] = 0;
vrad_arr[n] = vradx_arr[n] = vrady_arr[n] = vradz_arr[n] = 0;
rho_DM[n] = 0.0;
//d_arr[n] = (double(n)/199.0)*5.e8;
//d_arr[n] = pow(5.e8,double(n)/double(arrnum));
d_arr[n] = rmin * pow(rmax/rmin, double(n)/double(arrnum));
numdens_arr[n] = nmin * pow(nmax/nmin, double(n)/double(arrnum));
//printf("d_arr[%d] = %lg\n", n, d_arr[n]);
}
//for(i = Ngas; i < NumPart; i++)
for(i = 0; i < NumPart; i++)
{
dis = pow(((P[i].Pos[0]-sinkposx1)*(P[i].Pos[0]-sinkposx1) + (P[i].Pos[1]-sinkposy1)*(P[i].Pos[1]-sinkposy1) + (P[i].Pos[2]-sinkposz1)*(P[i].Pos[2]-sinkposz1)), 0.5);
dis=dis*1.e3*Time/(0.7); //dis is in pc
disAU = dis*206264.8060;
if(disAU < 5.e8)
{
for(n=0; n<arrnum; n++)
{
if(disAU < d_arr[n] && P[i].Type == 0)
m_enc_arr[n] = m_enc_arr[n] + P[i].Mass*1.e10/0.7;
if(disAU < d_arr[n] && P[i].Type == 1)
mdm_enc_arr[n] = mdm_enc_arr[n] + P[i].Mass*1.e10/0.7;
}
}
}
for(n=0; n<arrnum; n++)
{
rho_DM[n] = mdm_enc_arr[n]*1.98892e33/((4.0/3.0)*3.14159*pow(d_arr[n]*1.5e13, 3.0)); //DM density in cgs
printf("mdm_enc_arr[%d] = %lg\n", n, mdm_enc_arr[n]);
//printf("rho_DM[%d] = %lg\n", n, rho_DM[n]/(rho_b*pow(Time, -3.0)));
if(rho_DM[n] > 200.0*rho_b*pow(Time, -3.0))
{
rho_vir = rho_DM[n];
r_vir = d_arr[n];
}
}
//rotate(sinkposx1,sinkposy1,sinkposz1, vx1, vy1, vz1);
//for(i = Ngas; i < NumPart; i++)
for(i = 0; i < Ngas; i++)
{
P[i].Vel[0] = P[i].Vel[0] - vx1;
P[i].Vel[1] = P[i].Vel[1] - vy1;
P[i].Vel[2] = P[i].Vel[2] - vz1;
amomx = (P[i].Pos[1]-sinkposy1)*P[i].Vel[2] - (P[i].Pos[2]-sinkposz1)*P[i].Vel[1];
amomy = (P[i].Pos[2]-sinkposz1)*P[i].Vel[0] - (P[i].Pos[0]-sinkposx1)*P[i].Vel[2];
amomz = (P[i].Pos[0]-sinkposx1)*P[i].Vel[1] - (P[i].Pos[1]-sinkposy1)*P[i].Vel[0];
amomx = (P[i].Mass*1.e10*1.98892e33/.7)*amomx*pow(Time, 0.5)*1.e5*3.086e18*1.e3*Time/(0.7); //convert to cgs units
amomy = (P[i].Mass*1.e10*1.98892e33/.7)*amomy*pow(Time, 0.5)*1.e5*3.086e18*1.e3*Time/(0.7);
amomz = (P[i].Mass*1.e10*1.98892e33/.7)*amomz*pow(Time, 0.5)*1.e5*3.086e18*1.e3*Time/(0.7);
amom = pow(amomx*amomx + amomy*amomy + amomz*amomz, 0.5); //ang. mom. of particle in cgs
vel = pow(P[i].Vel[0]*P[i].Vel[0] + P[i].Vel[1]*P[i].Vel[1] + P[i].Vel[2]*P[i].Vel[2], 0.5);
vel = vel*pow(Time, 0.5)*1.e5; //convert vel to cgs
KE = 0.5*(P[i].Mass*1.e10*1.98892e33/.7)*pow(vel,2.0); //kinetic energy in cgs
velx = P[i].Vel[0]*pow(Time, 0.5);
vely = P[i].Vel[1]*pow(Time, 0.5);
velz = P[i].Vel[2]*pow(Time, 0.5);
dis_sim = pow(((P[i].Pos[0]-sinkposx1)*(P[i].Pos[0]-sinkposx1) + (P[i].Pos[1]-sinkposy1)*(P[i].Pos[1]-sinkposy1) + (P[i].Pos[2]-sinkposz1)*(P[i].Pos[2]-sinkposz1)), 0.5);
dis = pow(((P[i].Pos[0]-sinkposx1)*(P[i].Pos[0]-sinkposx1) + (P[i].Pos[1]-sinkposy1)*(P[i].Pos[1]-sinkposy1) + (P[i].Pos[2]-sinkposz1)*(P[i].Pos[2]-sinkposz1)), 0.5);
dis=dis*1.e3*Time/(0.7); //dis is in pc
disAU = dis*206264.8060;
dis=dis*3.086e18; //dis in now in cm
vrot = amom/(P[i].Mass*1.e10*1.98892e33/.7)/dis/1e5;
vrotx = amomx/(P[i].Mass*1.e10*1.98892e33/.7)/dis/1e5;
vroty = amomy/(P[i].Mass*1.e10*1.98892e33/.7)/dis/1e5;
vrotz = amomz/(P[i].Mass*1.e10*1.98892e33/.7)/dis/1e5; //vrot in km/s
omega = (P[i].Mass/1.e-10/.7)*vrot/(disAU*1.5e8);
if(P[i].nh > nthresh && disAU > 0)
{
masstot = masstot + P[i].Mass/1.e-10/.7;
omega0 = omega0 + (P[i].Mass/1.e-10/.7)*vrot/(disAU*1.5e8); //divide vrot by distance in km
}
disAUxyz = pow((P[i].Pos_new[0])*(P[i].Pos_new[0]) + (P[i].Pos_new[1])*(P[i].Pos_new[1]) + (P[i].Pos_new[2])*(P[i].Pos_new[2]), 0.5);
disAUxyz = disAUxyz*1.e3*Time/(0.7)*206264.8060;
disAUxy = pow(((P[i].Pos_new[0])*(P[i].Pos_new[0]) + (P[i].Pos_new[1])*(P[i].Pos_new[1])), 0.5);
disAUxy = disAUxy*1.e3*Time/(0.7)*206264.8060;
disAUz = fabs(P[i].Pos_new[2]*1.e3*Time/(0.7)*206264.8060);
vrad = (P[i].Vel[0]*(P[i].Pos[0]-sinkposx1) + P[i].Vel[1]*(P[i].Pos[1]-sinkposy1) + P[i].Vel[2]*(P[i].Pos[2]-sinkposz1))/dis_sim;
vrad = vrad*pow(Time, 0.5);
vradx = (P[i].Vel[0]*(P[i].Pos[0]-sinkposx1))/dis_sim*pow(Time, 0.5);
vrady = (P[i].Vel[1]*(P[i].Pos[1]-sinkposy1))/dis_sim*pow(Time, 0.5);
vradz = (P[i].Vel[2]*(P[i].Pos[2]-sinkposz1))/dis_sim*pow(Time, 0.5);
if(disAU < r_vir /*&& KE + PE < 0.0*/)
{
KE_tot = KE_tot + KE;
PE_tot = PE_tot + PE;
amomtot = amomtot + amom;
amomx_tot = amomx_tot + amomx;
amomy_tot = amomy_tot + amomy;
amomz_tot = amomz_tot + amomz;
num_tot = num_tot + P[i].Mass;
ncount++;
}
if(P[i].nh > 1.e-2)
for(n=0; n<arrnum; n++)
{
if(disAU > d_arr[n] && disAU < d_arr[n+1] && P[i].sink < 0.5)
{
amom_arr[n] = amom_arr[n] + amom/(P[i].Mass*1.e10*1.98892e33/.7);
dens_arr[n] = dens_arr[n] + P[i].nh;
c_s_arr[n] = c_s_arr[n] + pow(1.38e-16*P[i].Temp/1.e-24,0.5)/1.e5;
temp_arr[n] = temp_arr[n] + P[i].Temp;
mbe_arr[n] = mbe_arr[n] + 1050.*pow(P[i].Temp/200.,1.5)*pow(P[i].nh/1.e4,-0.5);
velx_arr[k] = velx_arr[k] + velx;
vely_arr[k] = vely_arr[k] + vely;
velz_arr[k] = velz_arr[k] + velz;
vrad_arr[n] = vrad_arr[n] + vrad;
//vrot_arr[n] = vrot_arr[n] + vrot;
vradx_arr[n] = vradx_arr[n] + vradx;
vrady_arr[n] = vrady_arr[n] + vrady;
vradz_arr[n] = vradz_arr[n] + vradz;
vrotx_arr[n] = vrotx_arr[n] + vrotx;
vroty_arr[n] = vroty_arr[n] + vroty;
vrotz_arr[n] = vrotz_arr[n] + vrotz;
n_arr[n]=n_arr[n] + 1.0;
}
if(disAU < d_arr[n+1] && disAU > 0)
omega_arr[n] = omega_arr[n] + omega;
}
if(P[i].nh > 1.e-2)
for(n=0; n<arrnum; n++)
{
if(disAUxy > d_arr[n] && disAUxy < d_arr[n+1] && disAUz < 10. && P[i].sink < 0.5)
//if(disAUxyz > d_arr[n] && disAUxyz < d_arr[n+1] && P[i].sink < 0.5)
{
surf_dens_arr[n] = surf_dens_arr[n] + P[i].Mass*1.e10*1.98892e33/.7;
n_arr2[n]=n_arr2[n] + 1.0;
}
}
}
outfile=fopen(output_fname, "a");
for(n=0; n<arrnum; n++)
{
printf("n_arr2 = %lg , c_s = %lg, vrad = %lg, surf_dens = %lg omega = %lg\n", n_arr2[n], c_s_arr[n], vrad_arr[n], surf_dens_arr[n], omega_arr[n]);
dens_arr[n] = dens_arr[n]/n_arr[n];
velx_arr[n] = velx_arr[n]/n_arr[n];
vely_arr[n] = vely_arr[n]/n_arr[n];
velz_arr[n] = velz_arr[n]/n_arr[n];
vradx_arr[n] = vradx_arr[n]/n_arr[n];
vrady_arr[n] = vrady_arr[n]/n_arr[n];
vradz_arr[n] = vradz_arr[n]/n_arr[n];
vrotx_arr[n] = vrotx_arr[n]/n_arr[n];
vroty_arr[n] = vroty_arr[n]/n_arr[n];
vrotz_arr[n] = vrotz_arr[n]/n_arr[n];
//vrad_arr[n] = pow(vradx_arr[n]*vradx_arr[n] + vrady_arr[n]*vrady_arr[n] + vradz_arr[n]*vradz_arr[n], 0.5)/n_arr[n];
vrad_arr[n] = vrad_arr[n]/n_arr[n];
vrot_arr[n] = pow(vrotx_arr[n]*vrotx_arr[n] + vroty_arr[n]*vroty_arr[n] + vrotz_arr[n]*vrotz_arr[n], 0.5)/n_arr[n];
c_s_arr[n] = c_s_arr[n]/n_arr[n];
temp_arr[n] = temp_arr[n]/n_arr[n];
mbe_arr[n] = mbe_arr[n]/n_arr[n];
surf_dens_arr[n] = surf_dens_arr[n]/3.14159/(pow(1.4958e13*d_arr[n+1],2) - pow(1.4958e13*d_arr[n],2));
turb_arr[n] = pow(velx_arr[n] - vradx_arr[n] - vrotx_arr[n],2) + pow(vely_arr[n] - vrady_arr[n] - vroty_arr[n],2) + pow(velz_arr[n] - vradz_arr[n] - vrotz_arr[n],2);
turb_arr[n] = pow(turb_arr[n], 0.5);
vrot_arr[n] = pow(vrotx_arr[n]*vrotx_arr[n] + vroty_arr[n]*vroty_arr[n] + vrotz_arr[n]*vrotz_arr[n], 0.5);
if(n > 0)
amom_arr[n] = (m_enc_arr[k] - m_enc_arr[k-1])*vrot_arr[n]*d_arr[n]*1.5e13*1.e5*2.e33;
if(n == 0)
amom_arr[n] = m_enc_arr[0]*vrot_arr[0]*d_arr[0]*1.5e13*1.e5*2.e33;
fprintf(outfile, "%15.11g %15.11g %15.11g %15.11g %15.11g %15.11g %15.11g %15.11g %15.11g %15.11g %15.11g %15.11g %15.11g\n", d_arr[n], m_enc_arr[n], mdm_enc_arr[n], dens_arr[n], surf_dens_arr[n], c_s_arr[n], temp_arr[n], mbe_arr[n], omega_arr[n]/m_enc_arr[n], vrad_arr[n], vrot_arr[n], turb_arr[n], amom_arr[n]);
}
fclose(outfile);
free(P);
}
}
int main(int argc, char **argv)
{
int port = SERVER_PORT;
timeout = 60;
static int daemon_mode = 0;
int c;
while (1) {
static struct option long_options[] = {
{"daemon", no_argument, &daemon_mode, 1},
{"file", required_argument, 0, 'f'},
{"port", required_argument, 0, 'p'},
{"sync", required_argument, 0, 's'},
{0, 0, 0, 0}
};
int option_index = 0;
c = getopt_long(argc, argv, "f:p:s:", long_options, &option_index);
if (c == -1) { break; }
switch (c) {
case 0:
if (long_options[option_index].flag != 0) { break; }
printf ("option %s", long_options[option_index].name);
if (optarg) { printf(" with arg %s", optarg); }
printf("\n");
break;
case 'f':
sync_file = optarg;
break;
case 'p':
port = atoi(optarg);
break;
case 's':
timeout = atoi(optarg);
break;
case '?':
/* getopt_long already printed an error message. */
break;
default:
abort();
}
}
if (daemon_mode == 1) {
daemonize();
}
if (sync_file == NULL) {
sync_file = "barbershop.snapshot";
}
// side snapshot file to hot load a snapshot by sending SIGHUP
int n = strlen(sync_file);
load_file = malloc(sizeof(char) * (n + 6));
sprintf(load_file, "%s.load", sync_file);
initializePriorityQueue();
time(&app_stats.started_at);
app_stats.version = "00.02.01";
app_stats.updates = 0;
app_stats.items = 0;
app_stats.pools = 0;
load_snapshot(sync_file);
signal(SIGCHLD, SIG_IGN);
signal(SIGPIPE, SIG_IGN);
signal(SIGTSTP, SIG_IGN);
signal(SIGTTOU, SIG_IGN);
signal(SIGTTIN, SIG_IGN);
signal(SIGHUP, signal_handler); /* catch hangup signal */
signal(SIGTERM, signal_handler); /* catch kill signal */
pthread_t garbage_collector;
pthread_create(&garbage_collector, NULL, (void *) gc_thread, NULL);
int listen_fd;
struct sockaddr_in listen_addr;
int reuseaddr_on = 1;
struct event ev_accept;
event_init();
listen_fd = socket(AF_INET, SOCK_STREAM, 0);
if (listen_fd < 0) { err(1, "listen failed"); }
if (setsockopt(listen_fd, SOL_SOCKET, SO_REUSEADDR, &reuseaddr_on, sizeof(reuseaddr_on)) == -1) { err(1, "setsockopt failed"); }
memset(&listen_addr, 0, sizeof(listen_addr));
listen_addr.sin_family = AF_INET;
listen_addr.sin_addr.s_addr = INADDR_ANY;
listen_addr.sin_port = htons(port);
if (bind(listen_fd, (struct sockaddr *)&listen_addr, sizeof(listen_addr)) < 0) { err(1, "bind failed"); }
if (listen(listen_fd, 5) < 0) { err(1, "listen failed"); }
if (setnonblock(listen_fd) < 0) { err(1, "failed to set server socket to non-blocking"); }
event_set(&ev_accept, listen_fd, EV_READ|EV_PERSIST, on_accept, NULL);
event_add(&ev_accept, NULL);
event_dispatch();
return 0;
}
void snap_thread()
{
load_snapshot(load_file);
respond_empty = 0;
pthread_exit(0);
}