コード例 #1
0
ファイル: rogueEPA.c プロジェクト: Denis84/EPA-WorkBench
static double testInsertThorough(tree *tr, nodeptr r, nodeptr q, boolean useVector)
{
  double 
    result,           
    qz[NUM_BRANCHES],
    z[NUM_BRANCHES];
  
  nodeptr  
    x = q->back,
    s = r->back;
  
  int     
    j;   

  for(j = 0; j < tr->numBranches; j++)    
    {
      qz[j] = q->z[j];
      z[j] = sqrt(qz[j]); 

      if(z[j] < zmin) 
	z[j] = zmin;
      
      if(z[j] > zmax)
	z[j] = zmax;
    }      	  	 	    	  
    
  hookup(r->next,       q, z, tr->numBranches);
  hookup(r->next->next, x, z, tr->numBranches);
  hookupDefault(r, s, tr->numBranches);      		     
    
  newviewGeneric(tr, r);	     
    
  localSmooth(tr, r, smoothings);
	  
  if(useVector)
    result = evaluateGenericVector(tr, r);
  else
    result = evaluateGeneric(tr, r);	 	       	  	   

  hookup(q, x, qz, tr->numBranches);
      
  r->next->next->back = r->next->back = (nodeptr) NULL; 

  return result;
}
コード例 #2
0
ファイル: fastSearch.c プロジェクト: gnewton/standard-RAxML
static void insertFast (tree *tr, nodeptr p, nodeptr q, int numBranches)
{
  nodeptr  r, s;
  int i;
  
  r = q->back;
  s = p->back;
      
  for(i = 0; i < numBranches; i++)
    tr->lzi[i] = q->z[i];
  
  if(Thorough)
    {
      double  zqr[NUM_BRANCHES], zqs[NUM_BRANCHES], zrs[NUM_BRANCHES], lzqr, lzqs, lzrs, lzsum, lzq, lzr, lzs, lzmax;      
      double defaultArray[NUM_BRANCHES];	
      double e1[NUM_BRANCHES], e2[NUM_BRANCHES], e3[NUM_BRANCHES];
      double *qz;
      
      qz = q->z;
      
      for(i = 0; i < numBranches; i++)
	defaultArray[i] = defaultz;
      
      makenewzGeneric(tr, q, r, qz, iterations, zqr, FALSE);           
      makenewzGeneric(tr, q, s, defaultArray, iterations, zqs, FALSE);                  
      makenewzGeneric(tr, r, s, defaultArray, iterations, zrs, FALSE);
      
      
      for(i = 0; i < numBranches; i++)
	{
	  lzqr = (zqr[i] > zmin) ? log(zqr[i]) : log(zmin); 
	  lzqs = (zqs[i] > zmin) ? log(zqs[i]) : log(zmin);
	  lzrs = (zrs[i] > zmin) ? log(zrs[i]) : log(zmin);
	  lzsum = 0.5 * (lzqr + lzqs + lzrs);
	  
	  lzq = lzsum - lzrs;
	  lzr = lzsum - lzqs;
	  lzs = lzsum - lzqr;
	  lzmax = log(zmax);
	  
	  if      (lzq > lzmax) {lzq = lzmax; lzr = lzqr; lzs = lzqs;} 
	  else if (lzr > lzmax) {lzr = lzmax; lzq = lzqr; lzs = lzrs;}
	  else if (lzs > lzmax) {lzs = lzmax; lzq = lzqs; lzr = lzrs;}          
	  
	  e1[i] = exp(lzq);
	  e2[i] = exp(lzr);
	  e3[i] = exp(lzs);
	}
      hookup(p->next,       q, e1, numBranches);
      hookup(p->next->next, r, e2, numBranches);
      hookup(p,             s, e3, numBranches);      		  
    }
  else
    {       
      double  z[NUM_BRANCHES]; 
      
      for(i = 0; i < numBranches; i++)
	{
	  z[i] = sqrt(q->z[i]);      
	  
	  if(z[i] < zmin) 
	    z[i] = zmin;
	  if(z[i] > zmax)
	    z[i] = zmax;
	}
      
      hookup(p->next,       q, z, tr->numBranches);
      hookup(p->next->next, r, z, tr->numBranches);	                         
    }
  
  newviewGeneric(tr, p);
  
  if(Thorough)
    {          
      localSmooth(tr, p, smoothings);   
      
      for(i = 0; i < numBranches; i++)
	{
	  tr->lzq[i] = p->next->z[i];
	  tr->lzr[i] = p->next->next->z[i];
	  tr->lzs[i] = p->z[i];            
	}           
    }
}