static int print_ref_list(int kinds, int detached, int verbose, int abbrev, struct commit_list *with_commit, const char **pattern)
{
int i;
struct append_ref_cb cb;
struct ref_list ref_list;
memset(&ref_list, 0, sizeof(ref_list));
ref_list.kinds = kinds;
ref_list.verbose = verbose;
ref_list.abbrev = abbrev;
ref_list.with_commit = with_commit;
if (merge_filter != NO_FILTER)
init_revisions(&ref_list.revs, NULL);
cb.ref_list = &ref_list;
cb.pattern = pattern;
cb.ret = 0;
for_each_rawref(append_ref, &cb);
if (merge_filter != NO_FILTER) {
struct commit *filter;
filter = lookup_commit_reference_gently(merge_filter_ref, 0);
if (!filter)
die(_("object '%s' does not point to a commit"),
sha1_to_hex(merge_filter_ref));
filter->object.flags |= UNINTERESTING;
add_pending_object(&ref_list.revs,
(struct object *) filter, "");
ref_list.revs.limited = 1;
if (prepare_revision_walk(&ref_list.revs))
die(_("revision walk setup failed"));
if (verbose)
ref_list.maxwidth = calc_maxwidth(&ref_list);
}
qsort(ref_list.list, ref_list.index, sizeof(struct ref_item), ref_cmp);
detached = (detached && (kinds & REF_LOCAL_BRANCH));
if (detached && match_patterns(pattern, "HEAD"))
show_detached(&ref_list);
for (i = 0; i < ref_list.index; i++) {
int current = !detached &&
(ref_list.list[i].kind == REF_LOCAL_BRANCH) &&
!strcmp(ref_list.list[i].name, head);
char *prefix = (kinds != REF_REMOTE_BRANCH &&
ref_list.list[i].kind == REF_REMOTE_BRANCH)
? "remotes/" : "";
print_ref_item(&ref_list.list[i], ref_list.maxwidth, verbose,
abbrev, current, prefix);
}
free_ref_list(&ref_list);
if (cb.ret)
error(_("some refs could not be read"));
return cb.ret;
}
/* Differences between standard residues and HET residues:
* 1. HET residues may be single atoms/molecules or part of a polymer;
* 2. HET residues may not have a CA or P atom. */
__inline__ static int process_het(Str *str, char *line, regex_t *regexPattern, char (*hetAtomNewname)[32], int nHetAtom)
{
int hetAtomNr = -1;
/* residue name */
strncpy(str->atom[str->nAtom].residueName, "HET", 3);
/* atom name: assign only allowed atom elements, otherwise atom is skipped */
if ((hetAtomNr = match_patterns(regexPattern, nHetAtom, &(str->atom[str->nAtom].atomName[0]))) >= 0) {
sprintf(str->atom[str->nAtom].atomName, "%s", &(hetAtomNewname[hetAtomNr][0]));
} else {
WarningSpec("Skipping HEATM", str->atom[str->nAtom].atomName);
return 1;
}
return 0;
}
static int append_ref(const char *refname, const unsigned char *sha1, int flags, void *cb_data)
{
struct append_ref_cb *cb = (struct append_ref_cb *)(cb_data);
struct ref_list *ref_list = cb->ref_list;
struct ref_item *newitem;
struct commit *commit;
int kind, i;
const char *prefix, *orig_refname = refname;
static struct {
int kind;
const char *prefix;
int pfxlen;
} ref_kind[] = {
{ REF_LOCAL_BRANCH, "refs/heads/", 11 },
{ REF_REMOTE_BRANCH, "refs/remotes/", 13 },
};
/* Detect kind */
for (i = 0; i < ARRAY_SIZE(ref_kind); i++) {
prefix = ref_kind[i].prefix;
if (strncmp(refname, prefix, ref_kind[i].pfxlen))
continue;
kind = ref_kind[i].kind;
refname += ref_kind[i].pfxlen;
break;
}
if (ARRAY_SIZE(ref_kind) <= i)
return 0;
/* Don't add types the caller doesn't want */
if ((kind & ref_list->kinds) == 0)
return 0;
if (!match_patterns(cb->pattern, refname))
return 0;
commit = NULL;
if (ref_list->verbose || ref_list->with_commit || merge_filter != NO_FILTER) {
commit = lookup_commit_reference_gently(sha1, 1);
if (!commit) {
cb->ret = error(_("branch '%s' does not point at a commit"), refname);
return 0;
}
/* Filter with with_commit if specified */
if (!is_descendant_of(commit, ref_list->with_commit))
return 0;
if (merge_filter != NO_FILTER)
add_pending_object(&ref_list->revs,
(struct object *)commit, refname);
}
ALLOC_GROW(ref_list->list, ref_list->index + 1, ref_list->alloc);
/* Record the new item */
newitem = &(ref_list->list[ref_list->index++]);
newitem->name = xstrdup(refname);
newitem->kind = kind;
newitem->commit = commit;
newitem->width = utf8_strwidth(refname);
newitem->dest = resolve_symref(orig_refname, prefix);
/* adjust for "remotes/" */
if (newitem->kind == REF_REMOTE_BRANCH &&
ref_list->kinds != REF_REMOTE_BRANCH)
newitem->width += 8;
if (newitem->width > ref_list->maxwidth)
ref_list->maxwidth = newitem->width;
return 0;
}