static void sequenceSetup() {
metaSequence = metaSequence_construct(0, 10, "ACTGACTGAC", ">one",
event_getName(eventTree_getRootEvent(eventTree)), cactusDisk);
sequence = sequence_construct(metaSequence, flower);
metaSequence2 = metaSequence_construct(0, 10, "ACTGACTGAC", ">two",
event_getName(eventTree_getRootEvent(eventTree)), cactusDisk);
sequence2 = sequence_construct(metaSequence2, flower);
}
static void cactusMetaSequenceTestSetup() {
if(!nestedTest) {
cactusMetaSequenceTestTeardown();
cactusDisk = testCommon_getTemporaryCactusDisk();
metaSequence = metaSequence_construct(1, 10, sequenceString,
headerString, eventName, cactusDisk);
}
}
void testCactusDisk_getMetaSequence(CuTest* testCase) {
cactusDiskTestSetup();
MetaSequence *metaSequence = metaSequence_construct(1, 10, "ACTGACTGAG",
"FOO", 10, cactusDisk);
MetaSequence *metaSequence2 = metaSequence_construct(2, 10, "CCCCCCCCCC",
"BAR", 10, cactusDisk);
CuAssertTrue(testCase, cactusDisk_getMetaSequence(cactusDisk, metaSequence_getName(metaSequence)) == metaSequence);
CuAssertTrue(testCase, cactusDisk_getMetaSequence(cactusDisk, metaSequence_getName(metaSequence2)) == metaSequence2);
//now try closing the disk, then reloading it, to see if we get the same result.
Name name1 = metaSequence_getName(metaSequence);
Name name2 = metaSequence_getName(metaSequence2);
cactusDisk_write(cactusDisk);
cactusDisk_destruct(cactusDisk);
cactusDisk = cactusDisk_construct(conf, 0);
metaSequence = cactusDisk_getMetaSequence(cactusDisk, name1);
metaSequence2 = cactusDisk_getMetaSequence(cactusDisk, name2);
CuAssertTrue(testCase, metaSequence != NULL);
CuAssertTrue(testCase, metaSequence2 != NULL);
CuAssertTrue(testCase, metaSequence_getName(metaSequence) == name1);
CuAssertTrue(testCase, metaSequence_getName(metaSequence2) == name2);
cactusDiskTestTeardown();
}
void processSequence(const char *fastaHeader, const char *string, int64_t length) {
/*
* Processes a sequence by adding it to the flower disk.
*/
End *end1;
End *end2;
Cap *cap1;
Cap *cap2;
MetaSequence *metaSequence;
Sequence *sequence;
//Now put the details in a flower.
metaSequence = metaSequence_construct(2, length, string, fastaHeader, event_getName(event), cactusDisk);
sequence = sequence_construct(metaSequence, flower);
end1 = end_construct2(0, isComplete, flower);
end2 = end_construct2(1, isComplete, flower);
cap1 = cap_construct2(end1, 1, 1, sequence);
cap2 = cap_construct2(end2, length + 2, 1, sequence);
cap_makeAdjacent(cap1, cap2);
totalSequenceNumber++;
}
