int main(int argc, char *argv[]) { /* Cmd line */ static struct option long_opts[] = { {"output", 1, NULL, 'o'}, {"npulse", 1, NULL, 'n'}, {"nbin", 1, NULL, 'b'}, {"nthread", 1, NULL, 'j'}, {"initial", 1, NULL, 'i'}, {"final", 1, NULL, 'f'}, {"time", 1, NULL, 'T'}, {"length", 1, NULL, 'L'}, {"src", 1, NULL, 's'}, {"polyco", 1, NULL, 'p'}, {"parfile", 1, NULL, 'P'}, {"foldfreq",1, NULL, 'F'}, {"cal", 0, NULL, 'C'}, {"unsigned",0, NULL, 'u'}, {"quiet", 0, NULL, 'q'}, {"help", 0, NULL, 'h'}, {0,0,0,0} }; int opt, opti; int nbin=256, nthread=4, fnum_start=1, fnum_end=0; int quiet=0, raw_signed=1, use_polycos=1, cal=0; int npulse_per_file = 64; double start_time=0.0, process_time=0.0; double fold_frequency=0.0; char output_base[256] = ""; char polyco_file[256] = ""; char par_file[256] = ""; char source[24]; source[0]='\0'; while ((opt=getopt_long(argc,argv,"o:n:b:j:i:f:T:L:s:p:P:F:Cuqh",long_opts,&opti))!=-1) { switch (opt) { case 'o': strncpy(output_base, optarg, 255); output_base[255]='\0'; break; case 'n': npulse_per_file = atoi(optarg); break; case 'b': nbin = atoi(optarg); break; case 'j': nthread = atoi(optarg); break; case 'i': fnum_start = atoi(optarg); break; case 'f': fnum_end = atoi(optarg); break; case 'T': start_time = atof(optarg); break; case 'L': process_time = atof(optarg); break; case 's': strncpy(source, optarg, 24); source[23]='\0'; break; case 'p': strncpy(polyco_file, optarg, 255); polyco_file[255]='\0'; use_polycos = 1; break; case 'P': strncpy(par_file, optarg, 255); par_file[255] = '\0'; break; case 'F': fold_frequency = atof(optarg); use_polycos = 0; break; case 'C': cal = 1; use_polycos = 0; break; case 'u': raw_signed=0; break; case 'q': quiet=1; break; case 'h': default: usage(); exit(0); break; } } if (optind==argc) { usage(); exit(1); } /* If no polyco/par file given, default to polyco.dat */ if (use_polycos && (par_file[0]=='\0' && polyco_file[0]=='\0')) sprintf(polyco_file, "polyco.dat"); /* Open first file */ struct psrfits pf; strcpy(pf.basefilename, argv[optind]); pf.filenum = fnum_start; pf.tot_rows = pf.N = pf.T = pf.status = 0; pf.hdr.chan_dm = 0.0; // What if folding data that has been partially de-dispersed? pf.filename[0]='\0'; int rv = psrfits_open(&pf); if (rv) { fits_report_error(stderr, rv); exit(1); } /* Check any constraints */ if (pf.hdr.nbits!=8) { fprintf(stderr, "Only implemented for 8-bit data (read nbits=%d).\n", pf.hdr.nbits); exit(1); } /* Check for calfreq */ if (cal) { if (pf.hdr.cal_freq==0.0) { if (fold_frequency==0.0) { fprintf(stderr, "Error: Cal mode selected, but CAL_FREQ=0. " "Set cal frequency with -F\n"); exit(1); } else { pf.hdr.cal_freq = fold_frequency; } } else { fold_frequency = pf.hdr.cal_freq; } } /* Set up output file */ struct psrfits pf_out; memcpy(&pf_out, &pf, sizeof(struct psrfits)); if (source[0]!='\0') { strncpy(pf_out.hdr.source, source, 24); } else { strncpy(source, pf.hdr.source, 24); source[23]='\0'; } if (output_base[0]=='\0') { /* Set up default output filename */ if (start_time>0.0) sprintf(output_base, "%s_SP_%s_%5.5d_%5.5d_%4.4d_%3.3d%s", pf_out.hdr.backend, pf_out.hdr.source, pf_out.hdr.start_day, (int)pf_out.hdr.start_sec, fnum_start, (int)start_time, cal ? "_cal" : ""); else sprintf(output_base, "%s_SP_%s_%5.5d_%5.5d%s", pf_out.hdr.backend, pf_out.hdr.source, pf_out.hdr.start_day, (int)pf_out.hdr.start_sec, cal ? "_cal" : ""); } strcpy(pf_out.basefilename, output_base); if (cal) { sprintf(pf_out.hdr.obs_mode, "CAL"); sprintf(pf_out.hdr.cal_mode, "SYNC"); } else sprintf(pf_out.hdr.obs_mode, "PSR"); strncpy(pf_out.fold.parfile,par_file,255); pf_out.fold.parfile[255]='\0'; pf_out.fptr = NULL; pf_out.filenum=0; pf_out.status=0; pf_out.hdr.nbin=nbin; pf_out.sub.FITS_typecode = TFLOAT; pf_out.sub.bytes_per_subint = sizeof(float) * pf_out.hdr.nchan * pf_out.hdr.npol * pf_out.hdr.nbin; pf_out.multifile = 1; pf_out.quiet = 1; pf_out.rows_per_file = npulse_per_file; rv = psrfits_create(&pf_out); if (rv) { fits_report_error(stderr, rv); exit(1); } /* Alloc data buffers */ pf.sub.dat_freqs = (float *)malloc(sizeof(float) * pf.hdr.nchan); pf_out.sub.dat_freqs = pf.sub.dat_freqs; pf.sub.dat_weights = (float *)malloc(sizeof(float) * pf.hdr.nchan); pf_out.sub.dat_weights = (float *)malloc(sizeof(float) * pf.hdr.nchan); pf.sub.dat_offsets = (float *)malloc(sizeof(float) * pf.hdr.nchan * pf.hdr.npol); pf_out.sub.dat_offsets = (float *)malloc(sizeof(float) * pf.hdr.nchan * pf.hdr.npol); pf.sub.dat_scales = (float *)malloc(sizeof(float) * pf.hdr.nchan * pf.hdr.npol); pf_out.sub.dat_scales = (float *)malloc(sizeof(float) * pf.hdr.nchan * pf.hdr.npol); pf_out.sub.data = (unsigned char *)malloc(pf_out.sub.bytes_per_subint); /* Output scale/offset */ int i, j, ipol, ichan; float offset_uv=0.0; // Extra cross-term offset for GUPPI if (strcmp("GUPPI",pf.hdr.backend)==0) { offset_uv=0.5; fprintf(stderr, "Found backend=GUPPI, setting offset_uv=%f\n", offset_uv); } // TODO: copy these from the input file for (ipol=0; ipol<pf.hdr.npol; ipol++) { for (ichan=0; ichan<pf.hdr.nchan; ichan++) { float offs = 0.0; if (ipol>1) offs = offset_uv; pf_out.sub.dat_scales[ipol*pf.hdr.nchan + ichan] = 1.0; pf_out.sub.dat_offsets[ipol*pf.hdr.nchan + ichan] = offs; } } for (i=0; i<pf.hdr.nchan; i++) { pf_out.sub.dat_weights[i]=1.0; } /* Read or make polycos */ int npc=0, ipc=0; struct polyco *pc = NULL; if (use_polycos) { if (polyco_file[0]=='\0') { /* Generate from par file */ npc = make_polycos(par_file, &pf.hdr, source, &pc); if (npc<=0) { fprintf(stderr, "Error generating polycos.\n"); exit(1); } printf("Auto-generated %d polycos, src=%s\n", npc, source); } else { /* Read from polyco file */ FILE *pcfile = fopen(polyco_file, "r"); if (pcfile==NULL) { fprintf(stderr, "Couldn't open polyco file.\n"); exit(1); } npc = read_all_pc(pcfile, &pc); if (npc==0) { fprintf(stderr, "Error parsing polyco file.\n"); exit(1); } fclose(pcfile); } } else { // Const fold period mode, generate a fake polyco? pc = (struct polyco *)malloc(sizeof(struct polyco)); sprintf(pc[0].psr, "CONST"); pc[0].mjd = (int)pf.hdr.MJD_epoch; pc[0].fmjd = fmod(pf.hdr.MJD_epoch,1.0); pc[0].rphase = 0.0; pc[0].f0 = fold_frequency; pc[0].nsite = 0; // Does this matter? pc[0].nmin = 24 * 60; pc[0].nc = 1; pc[0].rf = pf.hdr.fctr; pc[0].c[0] = 0.0; pc[0].used = 0; npc = 1; } int *pc_written = (int *)malloc(sizeof(int) * npc); for (i=0; i<npc; i++) pc_written[i]=0; /* Set up fold buf */ struct foldbuf fb; fb.nchan = pf.hdr.nchan; fb.npol = pf.hdr.npol; fb.nbin = pf_out.hdr.nbin; malloc_foldbuf(&fb); clear_foldbuf(&fb); struct fold_args fargs; fargs.data = (char *)malloc(sizeof(char)*pf.sub.bytes_per_subint); fargs.fb = &fb; fargs.nsamp = 1; fargs.tsamp = pf.hdr.dt; fargs.raw_signed = raw_signed; /* Main loop */ rv=0; int imjd; double fmjd, fmjd0=0, fmjd_samp, fmjd_epoch; long long cur_pulse=0, last_pulse=0; double psr_freq=0.0; int first_loop=1, first_data=1, sampcount=0, last_filenum=0; int bytes_per_sample = pf.hdr.nchan * pf.hdr.npol; signal(SIGINT, cc); while (run) { /* Read data block */ pf.sub.data = (unsigned char *)fargs.data; rv = psrfits_read_subint(&pf); if (rv) { if (rv==FILE_NOT_OPENED) rv=0; // Don't complain on file not found run=0; break; } /* If we've passed final file, exit */ if (fnum_end && pf.filenum>fnum_end) { run=0; break; } /* Get start date, etc */ imjd = (int)pf.hdr.MJD_epoch; fmjd = (double)(pf.hdr.MJD_epoch - (long double)imjd); fmjd += (pf.sub.offs-0.5*pf.sub.tsubint)/86400.0; /* Select polyco set. * We'll assume same one is valid for whole data block. */ if (use_polycos) { ipc = select_pc(pc, npc, source, imjd, fmjd); //ipc = select_pc(pc, npc, NULL, imjd, fmjd); if (ipc<0) { fprintf(stderr, "No matching polycos (src=%s, imjd=%d, fmjd=%f)\n", source, imjd, fmjd); break; } } else { ipc = 0; } pc[ipc].used = 1; // Mark this polyco set as used for folding /* First time stuff */ if (first_loop) { fmjd0 = fmjd; psr_phase(&pc[ipc], imjd, fmjd, NULL, &last_pulse); pf_out.sub.offs=0.0; first_loop=0; for (i=0; i<pf.hdr.nchan; i++) { pf_out.sub.dat_weights[i]=pf.sub.dat_weights[i]; } last_filenum = pf_out.filenum; } /* Check to see if its time to process data */ if (start_time>0.0) { double cur_time = (fmjd - fmjd0) * 86400.0; if (cur_time<start_time) continue; } if (first_data) { psr_phase(&pc[ipc], imjd, fmjd, NULL, &last_pulse); first_data=0; } /* Check to see if we're done */ if (process_time>0.0) { double cur_time = (fmjd - fmjd0) * 86400.0; if (cur_time > start_time + process_time) { run=0; break; } } /* for singlepulse: loop over samples, output a new subint * whenever pulse number increases. */ for (i=0; i<pf.hdr.nsblk; i++) { /* Keep track of timestamp */ // TODO also pointing stuff? fmjd_samp = fmjd + i*pf.hdr.dt/86400.0; pf_out.sub.offs += pf.sub.offs - 0.5*pf.sub.tsubint + i*pf.hdr.dt; sampcount++; /* Calc current pulse number */ psr_phase(&pc[ipc], imjd, fmjd_samp, &psr_freq, &cur_pulse); /* TODO: deal with scale/offset? */ /* Fold this sample */ fargs.pc = &pc[ipc]; fargs.imjd = imjd; fargs.fmjd = fmjd_samp; rv = fold_8bit_power(fargs.pc, fargs.imjd, fargs.fmjd, fargs.data + i*bytes_per_sample, fargs.nsamp, fargs.tsamp, fargs.raw_signed, fargs.fb); if (rv!=0) { fprintf(stderr, "Fold error.\n"); exit(1); } /* See if integration needs to be written, etc */ if (cur_pulse > last_pulse) { /* Figure out timestamp */ pf_out.sub.offs /= (double)sampcount; pf_out.sub.tsubint = 1.0/psr_freq; fmjd_epoch = fmjd0 + pf_out.sub.offs/86400.0; /* Transpose, output subint */ normalize_transpose_folds((float *)pf_out.sub.data, &fb); psrfits_write_subint(&pf_out); /* If file incremented, clear polyco flags */ if (pf_out.filenum > last_filenum) for (j=0; j<npc; j++) pc_written[j]=0; /* Write this polyco if needed */ if (pc_written[ipc]==0) { psrfits_write_polycos(&pf_out, pc, npc); pc_written[ipc] = 1; } /* Check for write errors */ if (pf_out.status) { fprintf(stderr, "Error writing subint.\n"); fits_report_error(stderr, pf_out.status); exit(1); } /* Clear counters, avgs */ clear_foldbuf(&fb); pf_out.sub.offs = 0.0; sampcount=0; last_pulse = cur_pulse; last_filenum = pf_out.filenum; } } /* Progress report */ if (!quiet) { printf("\rFile %d %5.1f%%", pf.filenum, 100.0 * (float)(pf.rownum-1)/(float)pf.rows_per_file); fflush(stdout); } } psrfits_close(&pf_out); psrfits_close(&pf); if (rv) { fits_report_error(stderr, rv); } exit(0); }
void guppi_psrfits_thread(void *_args) { /* Get args */ struct guppi_thread_args *args = (struct guppi_thread_args *)_args; pthread_cleanup_push((void *)guppi_thread_set_finished, args); /* Set cpu affinity */ cpu_set_t cpuset, cpuset_orig; sched_getaffinity(0, sizeof(cpu_set_t), &cpuset_orig); CPU_ZERO(&cpuset); CPU_SET(1, &cpuset); int rv = sched_setaffinity(0, sizeof(cpu_set_t), &cpuset); if (rv<0) { guppi_error("guppi_psrfits_thread", "Error setting cpu affinity."); perror("sched_setaffinity"); } /* Set priority */ rv = setpriority(PRIO_PROCESS, 0, args->priority); if (rv<0) { guppi_error("guppi_psrfits_thread", "Error setting priority level."); perror("set_priority"); } /* Attach to status shared mem area */ struct guppi_status st; rv = guppi_status_attach(&st); if (rv!=GUPPI_OK) { guppi_error("guppi_psrfits_thread", "Error attaching to status shared memory."); pthread_exit(NULL); } pthread_cleanup_push((void *)guppi_status_detach, &st); pthread_cleanup_push((void *)set_exit_status, &st); /* Init status */ guppi_status_lock_safe(&st); hputs(st.buf, STATUS_KEY, "init"); guppi_status_unlock_safe(&st); /* Initialize some key parameters */ struct guppi_params gp; struct psrfits pf; pf.sub.data = NULL; pf.sub.dat_freqs = pf.sub.dat_weights = NULL; pf.sub.dat_offsets = pf.sub.dat_scales = NULL; pf.hdr.chan_dm = 0.0; pf.filenum = 0; // This is crucial pthread_cleanup_push((void *)guppi_free_psrfits, &pf); pthread_cleanup_push((void *)psrfits_close, &pf); //pf.multifile = 0; // Use a single file for fold mode pf.multifile = 1; // Use a multiple files for fold mode pf.quiet = 0; // Print a message per each subint written /* Attach to databuf shared mem */ struct guppi_databuf *db; db = guppi_databuf_attach(args->input_buffer); if (db==NULL) { guppi_error("guppi_psrfits_thread", "Error attaching to databuf shared memory."); pthread_exit(NULL); } pthread_cleanup_push((void *)guppi_databuf_detach, db); /* Loop */ int curblock=0, total_status=0, firsttime=1, run=1, got_packet_0=0; int mode=SEARCH_MODE; char *ptr; char tmpstr[256]; struct foldbuf fb; struct polyco pc[64]; memset(pc, 0, sizeof(pc)); int n_polyco_written=0; float *fold_output_array = NULL; int scan_finished=0; signal(SIGINT, cc); do { /* Note waiting status */ guppi_status_lock_safe(&st); if (got_packet_0) sprintf(tmpstr, "waiting(%d)", curblock); else sprintf(tmpstr, "ready"); hputs(st.buf, STATUS_KEY, tmpstr); guppi_status_unlock_safe(&st); /* Wait for buf to have data */ rv = guppi_databuf_wait_filled(db, curblock); if (rv!=0) { // This is a big ol' kludge to avoid this process hanging // due to thread synchronization problems. sleep(1); continue; } /* Note current block */ guppi_status_lock_safe(&st); hputi4(st.buf, "CURBLOCK", curblock); guppi_status_unlock_safe(&st); /* See how full databuf is */ total_status = guppi_databuf_total_status(db); /* Read param structs for this block */ ptr = guppi_databuf_header(db, curblock); if (firsttime) { guppi_read_obs_params(ptr, &gp, &pf); firsttime = 0; } else { guppi_read_subint_params(ptr, &gp, &pf); } /* Find out what mode this data is in */ mode = psrfits_obs_mode(pf.hdr.obs_mode); /* Check if we got both packet 0 and a valid observation * start time. If so, flag writing to start. */ if (got_packet_0==0 && gp.packetindex==0 && gp.stt_valid==1) { got_packet_0 = 1; guppi_read_obs_params(ptr, &gp, &pf); guppi_update_ds_params(&pf); memset(pc, 0, sizeof(pc)); n_polyco_written=0; } /* If actual observation has started, write the data */ if (got_packet_0) { /* Note waiting status */ guppi_status_lock_safe(&st); hputs(st.buf, STATUS_KEY, "writing"); guppi_status_unlock_safe(&st); /* Get the pointer to the current data */ if (mode==FOLD_MODE) { fb.nchan = pf.hdr.nchan; fb.npol = pf.hdr.npol; fb.nbin = pf.hdr.nbin; fb.data = (float *)guppi_databuf_data(db, curblock); fb.count = (unsigned *)(guppi_databuf_data(db, curblock) + foldbuf_data_size(&fb)); fold_output_array = (float *)realloc(fold_output_array, sizeof(float) * pf.hdr.nbin * pf.hdr.nchan * pf.hdr.npol); pf.sub.data = (unsigned char *)fold_output_array; pf.fold.pc = (struct polyco *)(guppi_databuf_data(db,curblock) + foldbuf_data_size(&fb) + foldbuf_count_size(&fb)); } else pf.sub.data = (unsigned char *)guppi_databuf_data(db, curblock); /* Set the DC and Nyquist channels explicitly to zero */ /* because of the "FFT Problem" that splits DC power */ /* into those two bins. */ zero_end_chans(&pf); /* Output only Stokes I (in place) */ if (pf.hdr.onlyI && pf.hdr.npol==4) get_stokes_I(&pf); /* Downsample in frequency (in place) */ if (pf.hdr.ds_freq_fact > 1) downsample_freq(&pf); /* Downsample in time (in place) */ if (pf.hdr.ds_time_fact > 1) downsample_time(&pf); /* Folded data needs a transpose */ if (mode==FOLD_MODE) normalize_transpose_folds(fold_output_array, &fb); /* Write the data */ int last_filenum = pf.filenum; psrfits_write_subint(&pf); /* Any actions that need to be taken when a new file * is created. */ if (pf.filenum!=last_filenum) { /* No polycos yet written to the new file */ n_polyco_written=0; } /* Write the polycos if needed */ int write_pc=0, i, j; for (i=0; i<pf.fold.n_polyco_sets; i++) { if (pf.fold.pc[i].used==0) continue; int new_pc=1; for (j=0; j<n_polyco_written; j++) { if (polycos_differ(&pf.fold.pc[i], &pc[j])==0) { new_pc=0; break; } } if (new_pc || n_polyco_written==0) { pc[n_polyco_written] = pf.fold.pc[i]; n_polyco_written++; write_pc=1; } else { pf.fold.pc[i].used = 0; // Already have this one } } if (write_pc) psrfits_write_polycos(&pf, pf.fold.pc, pf.fold.n_polyco_sets); /* Is the scan complete? */ if ((pf.hdr.scanlen > 0.0) && (pf.T > pf.hdr.scanlen)) scan_finished = 1; /* For debugging... */ if (gp.drop_frac > 0.0) { printf("Block %d dropped %.3g%% of the packets\n", pf.tot_rows, gp.drop_frac*100.0); } } /* Mark as free */ guppi_databuf_set_free(db, curblock); /* Go to next block */ curblock = (curblock + 1) % db->n_block; /* Check for cancel */ pthread_testcancel(); } while (run && !scan_finished); /* Cleanup */ if (fold_output_array!=NULL) free(fold_output_array); pthread_exit(NULL); pthread_cleanup_pop(0); /* Closes psrfits_close */ pthread_cleanup_pop(0); /* Closes guppi_free_psrfits */ pthread_cleanup_pop(0); /* Closes set_exit_status */ pthread_cleanup_pop(0); /* Closes set_finished */ pthread_cleanup_pop(0); /* Closes guppi_status_detach */ pthread_cleanup_pop(0); /* Closes guppi_databuf_detach */ }
int main(int argc, char *argv[]) { /* Cmd line */ static struct option long_opts[] = { {"output", 1, NULL, 'o'}, {"nbin", 1, NULL, 'b'}, {"tsub", 1, NULL, 't'}, {"nthread", 1, NULL, 'j'}, {"initial", 1, NULL, 'i'}, {"final", 1, NULL, 'f'}, {"src", 1, NULL, 's'}, {"polyco", 1, NULL, 'p'}, {"parfile", 1, NULL, 'P'}, {"foldfreq",1, NULL, 'F'}, {"cal", 0, NULL, 'C'}, {"unsigned",0, NULL, 'u'}, {"nunsigned",1, NULL, 'U'}, {"split", 1, NULL, 'S'}, {"apply", 0, NULL, 'A'}, {"quiet", 0, NULL, 'q'}, {"help", 0, NULL, 'h'}, {0,0,0,0} }; int opt, opti; int nbin=256, nthread=4, fnum_start=1, fnum_end=0; int quiet=0, raw_signed=1, use_polycos=1, cal=0, apply_scale=0; double split_size_gb = 1.0; double tfold = 60.0; double fold_frequency=0.0; char output_base[256] = ""; char polyco_file[256] = ""; char par_file[256] = ""; char source[24]; source[0]='\0'; while ((opt=getopt_long(argc,argv,"o:b:t:j:i:f:s:p:P:F:CuU:S:Aqh",long_opts,&opti))!=-1) { switch (opt) { case 'o': strncpy(output_base, optarg, 255); output_base[255]='\0'; break; case 'b': nbin = atoi(optarg); break; case 't': tfold = atof(optarg); break; case 'j': nthread = atoi(optarg); break; case 'i': fnum_start = atoi(optarg); break; case 'f': fnum_end = atoi(optarg); break; case 's': strncpy(source, optarg, 24); source[23]='\0'; break; case 'p': strncpy(polyco_file, optarg, 255); polyco_file[255]='\0'; use_polycos = 1; break; case 'P': strncpy(par_file, optarg, 255); par_file[255] = '\0'; break; case 'F': fold_frequency = atof(optarg); use_polycos = 0; break; case 'C': cal = 1; use_polycos = 0; break; case 'u': raw_signed=0; break; case 'U': raw_signed = 4 - atoi(optarg); break; case 'S': split_size_gb = atof(optarg); break; case 'A': apply_scale = 1; break; case 'q': quiet=1; break; case 'h': default: usage(); exit(0); break; } } if (optind==argc) { usage(); exit(1); } /* If no polyco/par file given, default to polyco.dat */ if (use_polycos && (par_file[0]=='\0' && polyco_file[0]=='\0')) sprintf(polyco_file, "polyco.dat"); /* Open first file */ struct psrfits pf; sprintf(pf.basefilename, argv[optind]); pf.filenum = fnum_start; pf.tot_rows = pf.N = pf.T = pf.status = 0; pf.hdr.chan_dm = 0.0; // What if folding data that has been partially de-dispersed? pf.filename[0]='\0'; int rv = psrfits_open(&pf); if (rv) { fits_report_error(stderr, rv); exit(1); } /* Check any constraints */ if (pf.hdr.nbits!=8) { fprintf(stderr, "Only implemented for 8-bit data (read nbits=%d).\n", pf.hdr.nbits); exit(1); } /* Check for calfreq */ if (cal) { if (pf.hdr.cal_freq==0.0) { if (fold_frequency==0.0) { fprintf(stderr, "Error: Cal mode selected, but CAL_FREQ=0. " "Set cal frequency with -F\n"); exit(1); } else { pf.hdr.cal_freq = fold_frequency; } } else { fold_frequency = pf.hdr.cal_freq; } } /* Set up output file */ struct psrfits pf_out; memcpy(&pf_out, &pf, sizeof(struct psrfits)); if (source[0]!='\0') { strncpy(pf_out.hdr.source, source, 24); } else { strncpy(source, pf.hdr.source, 24); source[23]='\0'; } if (output_base[0]=='\0') { /* Set up default output filename */ sprintf(output_base, "%s_%s_%5.5d_%5.5d%s", pf_out.hdr.backend, pf_out.hdr.source, pf_out.hdr.start_day, (int)pf_out.hdr.start_sec, cal ? "_cal" : ""); } sprintf(pf_out.basefilename, output_base); if (cal) { sprintf(pf_out.hdr.obs_mode, "CAL"); sprintf(pf_out.hdr.cal_mode, "SYNC"); } else sprintf(pf_out.hdr.obs_mode, "PSR"); strncpy(pf_out.fold.parfile,par_file,255); pf_out.fold.parfile[255]='\0'; pf_out.fptr = NULL; pf_out.filenum=0; pf_out.status=0; pf_out.quiet=0; pf_out.hdr.nbin=nbin; pf_out.sub.FITS_typecode = TFLOAT; pf_out.sub.bytes_per_subint = sizeof(float) * pf_out.hdr.nchan * pf_out.hdr.npol * pf_out.hdr.nbin; if (split_size_gb > 0.0) { pf_out.multifile = 1; pf_out.rows_per_file = (int) (split_size_gb * (1024.0*1024.0*1024.0) / (double)pf_out.sub.bytes_per_subint); printf("Writing a maximum of %d subintegrations (~%.1f GB) per output file.\n", pf_out.rows_per_file, split_size_gb); } else { pf_out.multifile = 0; printf("Writing a single output file.\n"); } rv = psrfits_create(&pf_out); if (rv) { fits_report_error(stderr, rv); exit(1); } /* Alloc data buffers */ pf.sub.dat_freqs = (float *)malloc(sizeof(float) * pf.hdr.nchan); pf_out.sub.dat_freqs = pf.sub.dat_freqs; pf.sub.dat_weights = (float *)malloc(sizeof(float) * pf.hdr.nchan); pf_out.sub.dat_weights = (float *)malloc(sizeof(float) * pf.hdr.nchan); pf.sub.dat_offsets = (float *)malloc(sizeof(float) * pf.hdr.nchan * pf.hdr.npol); pf_out.sub.dat_offsets = (float *)malloc(sizeof(float) * pf.hdr.nchan * pf.hdr.npol); pf.sub.dat_scales = (float *)malloc(sizeof(float) * pf.hdr.nchan * pf.hdr.npol); pf_out.sub.dat_scales = (float *)malloc(sizeof(float) * pf.hdr.nchan * pf.hdr.npol); pf_out.sub.data = (unsigned char *)malloc(pf_out.sub.bytes_per_subint); /* Output scale/offset */ int i, ipol, ichan; float offset_uv=0.0; // Extra cross-term offset for GUPPI if (strcmp("GUPPI",pf.hdr.backend)==0 && apply_scale==0) { offset_uv=0.5; fprintf(stderr, "Found backend=GUPPI, setting offset_uv=%f\n", offset_uv); } // Initialize scale/output and weights. // These get copied from the input file later during the main loop. for (ipol=0; ipol<pf.hdr.npol; ipol++) { for (ichan=0; ichan<pf.hdr.nchan; ichan++) { float offs = 0.0; if (ipol>1) offs = offset_uv; pf_out.sub.dat_scales[ipol*pf.hdr.nchan + ichan] = 1.0; pf_out.sub.dat_offsets[ipol*pf.hdr.nchan + ichan] = offs; } } for (i=0; i<pf.hdr.nchan; i++) { pf_out.sub.dat_weights[i]=1.0; } /* Read or make polycos */ int npc=0, ipc=0; struct polyco *pc = NULL; if (use_polycos) { if (polyco_file[0]=='\0') { /* Generate from par file */ npc = make_polycos(par_file, &pf.hdr, source, &pc); if (npc<=0) { fprintf(stderr, "Error generating polycos.\n"); exit(1); } printf("Auto-generated %d polycos, src=%s\n", npc, source); } else { /* Read from polyco file */ FILE *pcfile = fopen(polyco_file, "r"); if (pcfile==NULL) { fprintf(stderr, "Couldn't open polyco file.\n"); exit(1); } npc = read_all_pc(pcfile, &pc); if (npc==0) { fprintf(stderr, "Error parsing polyco file.\n"); exit(1); } fclose(pcfile); } } else { // Const fold period mode, generate a fake polyco? pc = (struct polyco *)malloc(sizeof(struct polyco)); sprintf(pc[0].psr, "CONST"); pc[0].mjd = (int)pf.hdr.MJD_epoch; pc[0].fmjd = fmod(pf.hdr.MJD_epoch,1.0); pc[0].rphase = 0.0; pc[0].f0 = fold_frequency; pc[0].nsite = 0; // Does this matter? pc[0].nmin = 24 * 60; pc[0].nc = 1; pc[0].rf = pf.hdr.fctr; pc[0].c[0] = 0.0; pc[0].used = 0; npc = 1; } int *pc_written = (int *)malloc(sizeof(int) * npc); for (i=0; i<npc; i++) pc_written[i]=0; /* Alloc total fold buf */ struct foldbuf fb; fb.nchan = pf.hdr.nchan; fb.npol = pf.hdr.npol; fb.nbin = pf_out.hdr.nbin; malloc_foldbuf(&fb); clear_foldbuf(&fb); /* Set up thread management */ pthread_t *thread_id; struct fold_args *fargs; thread_id = (pthread_t *)malloc(sizeof(pthread_t) * nthread); fargs = (struct fold_args *)malloc(sizeof(struct fold_args) * nthread); for (i=0; i<nthread; i++) { thread_id[i] = 0; fargs[i].data = (char *)malloc(sizeof(char)*pf.sub.bytes_per_subint); fargs[i].fb = (struct foldbuf *)malloc(sizeof(struct foldbuf)); fargs[i].fb->nbin = pf_out.hdr.nbin; fargs[i].fb->nchan = pf.hdr.nchan; fargs[i].fb->npol = pf.hdr.npol; fargs[i].nsamp = pf.hdr.nsblk; fargs[i].tsamp = pf.hdr.dt; fargs[i].raw_signed=raw_signed; malloc_foldbuf(fargs[i].fb); clear_foldbuf(fargs[i].fb); fargs[i].scale = (float *)malloc(sizeof(float) * pf.hdr.nchan * pf.hdr.npol); fargs[i].offset = (float *)malloc(sizeof(float) * pf.hdr.nchan * pf.hdr.npol); } /* Main loop */ rv=0; int imjd; double fmjd, fmjd0=0, fmjd_next=0, fmjd_epoch; double offs0=0, offs1=0; //double phase=0.0, freq=1.0; int first=1, subcount=0; int cur_thread = 0; signal(SIGINT, cc); while (run) { /* Read data block */ pf.sub.data = (unsigned char *)fargs[cur_thread].data; rv = psrfits_read_subint(&pf); if (rv) { if (rv==FILE_NOT_OPENED) rv=0; // Don't complain on file not found run=0; break; } /* If we've passed final file, exit */ if (fnum_end && pf.filenum>fnum_end) { run=0; break; } /* Get start date, etc */ imjd = (int)pf.hdr.MJD_epoch; fmjd = (double)(pf.hdr.MJD_epoch - (long double)imjd); fmjd += (pf.sub.offs-0.5*pf.sub.tsubint)/86400.0; /* First time stuff */ if (first) { fmjd0 = fmjd; fmjd_next = fmjd + tfold/86400.0; pf_out.sub.offs=0.0; offs0 = pf.sub.offs - 0.5*pf.sub.tsubint; offs1 = pf.sub.offs + 0.5*pf.sub.tsubint; first=0; for (i=0; i<pf.hdr.nchan; i++) { pf_out.sub.dat_weights[i]=pf.sub.dat_weights[i]; } } /* Keep track of timestamp */ // TODO also pointing stuff. pf_out.sub.offs += pf.sub.offs; subcount++; /* Update output block end time */ offs1 = pf.sub.offs + 0.5*pf.sub.tsubint; /* Select polyco set */ if (use_polycos) { ipc = select_pc(pc, npc, source, imjd, fmjd); //ipc = select_pc(pc, npc, NULL, imjd, fmjd); if (ipc<0) { fprintf(stderr, "No matching polycos (src=%s, imjd=%d, fmjd=%f)\n", source, imjd, fmjd); break; } } else { ipc = 0; } pc[ipc].used = 1; // Mark this polyco set as used for folding /* Copy scale/offset from input to output if we're not applying it */ if (apply_scale==0) { for (i=0; i<pf.hdr.nchan*pf.hdr.npol; i++) { pf_out.sub.dat_scales[i] = pf.sub.dat_scales[i]; pf_out.sub.dat_offsets[i] = pf.sub.dat_offsets[i]; } } /* Fold this subint */ fargs[cur_thread].pc = &pc[ipc]; fargs[cur_thread].imjd = imjd; fargs[cur_thread].fmjd = fmjd; rv = pthread_create(&thread_id[cur_thread], NULL, fold_8bit_power_thread, &fargs[cur_thread]); if (rv) { fprintf(stderr, "Thread creation error.\n"); exit(1); } if (apply_scale) { for (i=0; i<pf.hdr.nchan*pf.hdr.npol; i++) { fargs[cur_thread].scale[i] = pf.sub.dat_scales[i]; fargs[cur_thread].offset[i] = pf.sub.dat_offsets[i]; } } cur_thread++; /* Combine thread results if needed */ if (cur_thread==nthread || fmjd>fmjd_next) { /* Loop over active threads */ for (i=0; i<cur_thread; i++) { /* Wait for thread to finish */ rv = pthread_join(thread_id[i], NULL); if (rv) { fprintf(stderr, "Thread join error.\n"); exit(1); } /* Apply scale and offset here */ if (apply_scale) scale_offset_folds(fargs[i].fb, fargs[i].scale, fargs[i].offset); /* Combine its result into total fold */ accumulate_folds(&fb, fargs[i].fb); /* Reset thread info */ clear_foldbuf(fargs[i].fb); thread_id[i] = 0; } /* Reset active thread count */ cur_thread = 0; } /* See if integration needs to be written, etc */ if (fmjd > fmjd_next) { /* Figure out timestamp */ pf_out.sub.offs /= (double)subcount; pf_out.sub.tsubint = offs1 - offs0; fmjd_epoch = fmjd0 + pf_out.sub.offs/86400.0; /* // Don't need this stuff if we set EPOCHS=MIDTIME ipc = select_pc(pc, npc, pf.hdr.source, imjd, fmjd_epoch); if (ipc<0) { fprintf(stderr, "Polyco error, exiting.\n"); exit(1); } phase = psr_phase(&pc[ipc], imjd, fmjd_epoch, &freq); phase = fmod(phase, 1.0); pf_out.sub.offs -= phase/freq; // ref epoch needs 0 phase */ /* Transpose, output subint */ normalize_transpose_folds((float *)pf_out.sub.data, &fb); int last_filenum = pf_out.filenum; psrfits_write_subint(&pf_out); /* Check for write errors */ if (pf_out.status) { fprintf(stderr, "Error writing subint.\n"); fits_report_error(stderr, pf_out.status); exit(1); } /* Check if we started a new file */ if (pf_out.filenum!=last_filenum) { /* No polycos yet written to this file */ for (i=0; i<npc; i++) pc_written[i]=0; } /* Write the current polyco if needed */ if (pc_written[ipc]==0) { psrfits_write_polycos(&pf_out, &pc[ipc], 1); if (pf_out.status) { fprintf(stderr, "Error writing polycos.\n"); fits_report_error(stderr, pf_out.status); exit(1); } pc_written[ipc] = 1; } /* Clear counters, avgs */ clear_foldbuf(&fb); pf_out.sub.offs = 0.0; offs0 = pf.sub.offs - 0.5*pf.sub.tsubint; subcount=0; /* Set next output time */ fmjd_next = fmjd + tfold/86400.0; } /* Progress report */ if (!quiet) { printf("\rFile %d %5.1f%%", pf.filenum, 100.0 * (float)(pf.rownum-1)/(float)pf.rows_per_file); fflush(stdout); } } /* Join any running threads */ for (i=0; i<cur_thread; i++) if (thread_id[i]) pthread_join(thread_id[i], NULL); /* Remove polyco table in cal mode */ if (cal) { rv = psrfits_remove_polycos(&pf_out); if (rv) { fits_report_error(stderr, rv); } } psrfits_close(&pf_out); psrfits_close(&pf); if (rv) { fits_report_error(stderr, rv); } exit(0); }