コード例 #1
0
ファイル: paw_potential.c プロジェクト: drhaney/nwchem
/****************************************
 Function name    : paw_generate_pseudopot
 Description        :
 Return type              : void
 Author                   : Marat Valiev
 Date & Time              : 4/10/99 7:40:00 PM
****************************************/
void paw_generate_pseudopot()
{

    int   k;
    int   Ngrid;
    double charge;
    double ps_charge;
    double Z;
    double *Vh;
    double *Vx;
    double *Vc;
    double *rho;
    double *rho_ps;
    double *rho_core;
    double *rho_core_ps;
    double *full_density;
    double *full_ps_density;
    double* V_comp;
    double *rgrid;
    FILE *fp;
    char data_filename[300];

    if ( !(paw_projectors_are_done()) )
    {
        printf("error, pseudopotential cannot be generated ");
        printf(" because projectors have not been yet \n");
        exit(1);
    }

    Ngrid = paw_N_LogGrid();
    rgrid = paw_r_LogGrid();

    Vh      = paw_alloc_LogGrid();

    Vx      = paw_alloc_LogGrid();
    Vc      = paw_alloc_LogGrid();

    full_density = paw_alloc_LogGrid();
    full_ps_density = paw_alloc_LogGrid();

    Z = paw_get_ion_charge();

    paw_set_core();

    /*get densities*/
    rho         = paw_get_pointer_paw_density();
    rho_ps      = paw_get_pointer_paw_ps_density();
    rho_core    = paw_get_pointer_core_density();
    rho_core_ps = paw_get_pointer_ps_core_density();

    paw_Zero_LogGrid(full_density);
    paw_Zero_LogGrid(full_ps_density);

    for (k=0;k<=Ngrid-1;k++)
    {
        full_density[k]    = rho[k] + rho_core[k];
        full_ps_density[k] = rho_ps[k] + rho_core_ps[k];

    }

    charge   = paw_Integrate_LogGrid(full_density);
    ps_charge      = paw_Integrate_LogGrid(full_ps_density);


    V_comp = paw_find_comp_charge_potential(Z,charge,ps_charge);

    paw_generate_hartree_pot(full_ps_density);
    Vh = paw_get_hartree_pot();

    paw_generate_exchange_pot_LDA(full_ps_density);
    Vx = paw_get_exchange_potential();

    paw_generate_corr_pot_LDA(full_ps_density);
    Vc = paw_get_corr_pot_LDA();


    /*form pseudopotential*/
    for (k=0;k<=Ngrid-1;k++)
    {

        V_pseudo[k] = V_ref[k] - Vh[k]- V_comp[k]- Vc[k] - Vx[k];



    }

    if (paw_debug())
    {
        sprintf(data_filename,"%sdensity",paw_sdir());
        fp = fopen(data_filename,"w");

        for (k=0;k<Ngrid;++k)
            fprintf(fp,"%f  %f   %f\n",rgrid[k],rho[k] - rho_ps[k],V_pseudo[k]);
        fclose(fp);
    }

    paw_dealloc_LogGrid(full_density);
    paw_dealloc_LogGrid(full_ps_density);

}
コード例 #2
0
ファイル: paw_orbitals.c プロジェクト: 000Justin000/nwchem
/****************************************
 Function name	  : paw_solve_scattering_orbitals
 Description	    :
 Return type		  : void
 Author     		  : Marat Valiev
 Date & Time		  : 4/10/99 4:58:27 PM
****************************************/
void paw_solve_scattering_orbitals()
{
    int i;
    int j;
    int k;
    int i_match;
    int Ngrid;
    double sum;
    double *V;
    double *rgrid;
    double r_sphere;
    double Zion;

    Ngrid = paw_N_LogGrid();
    rgrid = paw_r_LogGrid();
    Zion = paw_get_ion_charge();

    /*normalization sphere radius*/
    r_sphere = 2.0;

    /*check if the occupied orbitals are done*/
    if (!(occupied_orbitals_done))
    {
        printf("cannot calculate scattering orbitals\n");
        printf("calculate occupied states first\n");
    }


    /*get Kohn-Sham potential*/
    V = paw_get_kohn_sham_potential();


    for (i=Nbound;i<Ntotal;i++)
    {

        /*set the end point*/
        i_match = Ngrid-1;

        if (Solver_Type==Schrodinger)
        {
           paw_R_Schrodinger_Fixed_E(l[i],V,i_match,eigenvalue[i],psi[i],psi_prime[i]);
        }
        else
        {
           paw_R_Pauli_Fixed_E(n[i],l[i],Zion,V,i_match,eigenvalue[i],psi[i],psi_prime[i]);
        }

        for (j=0;j<i-1;j++)
        {

            if (l[i]==l[j])
            {
                sum = paw_dot_product(psi[i],psi[j]);
                for (k=0;k<Ngrid;++k)
                    psi[i][k] = psi[i][k] - sum*psi[j][k];
            }

        }

        /*normalize*/
        sum = paw_dot_product1(paw_get_grid_index(r_sphere),psi[i],psi[i]);
        sum = 1.0/sqrt(sum);

        for (k=0;k<Ngrid;++k)
        {
            psi[i][k] = psi[i][k]*sum;
            psi_prime[i][k] = psi_prime[i][k]*sum;

        }


    }

    /*debug
    printf("orthogonality\n");
    for(i=0;i<=Ntotal-1;i++)
    {
        for(j=0;j<=Ntotal-1;j++)
        {
          if(l[i]==l[j])
          {
            printf("%d\t %d\t %f\n",i,j, paw_dot_product(psi[i],psi[j]));
          }
      
        }  
     }
        exit(1);
    end debug  */
}
コード例 #3
0
ファイル: paw_orbitals.c プロジェクト: 000Justin000/nwchem
/****************************************
 Function name	  :  paw_solve_occupied_orbitals
 Description	    :
 Return type		  : void
 Author     		  : Marat Valiev
 Date & Time		  : 4/10/99 6:13:22 PM
****************************************/
void   paw_solve_occupied_orbitals()
{
    int   i;
    int   j;
    int  k;
    int  it;
    int  converged;
    int   Ngrid;
    int   max_iter;
    double sum;
    double Etmp;
    double thl;
    double sn;
    double sd;
    double dr;
    double rl0;
    double rl1;
    double vn;
    double Zion;
    double *Vo;
    double *Vo1;
    double *Vi1;
    double *Vi;
    double *rgrid;

    max_iter = 100;

    Ngrid = paw_N_LogGrid();
    rgrid = paw_r_LogGrid();

    /* allocate temporary grids */
    Vi      = paw_alloc_LogGrid();
    Vo1     = paw_alloc_LogGrid();
    Vi1     = paw_alloc_LogGrid();

    /* set initial guess for KS potential as Thomas-Fermi*/
    Zion = paw_get_ion_charge();
    paw_Thomas_Fermi(Zion,Vi);

    /*initial guess for the eigenvalues*/
    paw_guess_eigenvalues(Zion,Vi);

    it = 0;
    converged = False;
    while ((!converged) && (it < max_iter))
    {

        it        = it + 1;
        converged = True;

        /* solve for each of the eigenstates */
        for (i=0; i<= Nvalence-1; i++)
        {

            Etmp = eigenvalue[i];

            if (Solver_Type==Schrodinger)
            {
               paw_R_Schrodinger(n[i],l[i],Vi,
                                 &Etmp,psi[i],psi_prime[i]);
            }
            else
            {
               paw_R_Pauli(n[i],l[i],Zion,Vi,
                           &Etmp,psi[i],psi_prime[i]);
            }

            if (fabs(eigenvalue[i] - Etmp) >1.0e-10)
                converged = False;

            eigenvalue[i]=Etmp;


            /*orthogonalize to lower orbitals*/
            for (j=0;j<=i-1;j++)
            {
                if (l[i]==l[j])
                {
                    sum = paw_dot_product(psi[i],psi[j]);
                    for (k=0;k<Ngrid;++k)
                        psi[i][k] = psi[i][k] - sum*psi[j][k];
                }

            }

            /*normalize the orbital*/
            for (k=0; k<=Ngrid-1; k++)
                psi_tmp[k] = pow((psi[i][k]/rgrid[k]),2.0);

            sum = paw_Integrate_LogGrid(psi_tmp);

            for (k=0; k<=Ngrid-1; k++)
                psi[i][k]=psi[i][k]/pow(sum,0.5);

        }

        /*get new density*/
        paw_generate_density(rho);

        /*get new potential*/
        paw_set_kohn_sham_potential(rho);
        Vo = paw_get_kohn_sham_potential();


        /*****************************************/
        /* Generate the next iteration potential */
        /* using D.G. Anderson method            */
        /*****************************************/
        thl = 0.0;
        if (it > 1)
        {
            sn = 0.0;
            sd = 0.0;

            for (k=0; k<Ngrid; ++k)
            {
                rl0 = Vo[k]  - Vi[k];
                rl1 = Vo1[k] - Vi1[k];
                dr  = rl0 - rl1;
                sn = sn + rl0*dr*(rgrid[k]*rgrid[k]);
                sd = sd +  dr*dr*(rgrid[k]*rgrid[k]);
            }


            thl = sn/sd;

        }

        for (k=0; k<=Ngrid-1; k++)
        {

            vn = (1.0-0.5)*( (1.0-thl)*Vi[k] + thl*Vi1[k] )
                 + 0.5 *( (1.0-thl)*Vo[k] + thl*Vo1[k] );
            Vi1[k] = Vi[k];
            Vo1[k] = Vo[k];
            Vi[k]  = vn;

        }


    } /* end while */

    if (!converged)
    {
        printf("Not Converged\n");
        exit(1);
    }

    occupied_orbitals_done = True;
    paw_generate_density(rho);
    paw_set_kohn_sham_potential(rho);



    /* free up temporary memory */
    paw_dealloc_LogGrid(Vi);
    paw_dealloc_LogGrid(Vo1);
    paw_dealloc_LogGrid(Vi1);

}
コード例 #4
0
ファイル: paw_orbitals.c プロジェクト: 000Justin000/nwchem
/****************************************
 Function name	  : paw_solve_unoccupied_orbitals
 Description	    :
 Return type		  : void
 Author     		  : Marat Valiev
 Date & Time		  : 4/10/99 6:13:39 PM
****************************************/
void paw_solve_unoccupied_orbitals()
{
    int i;
    int j;
    int k;
    int state;
    int Ngrid;
    int status;
    double sum;
    double *V;
    double *rgrid;
    double Zion;


    Ngrid = paw_N_LogGrid();
    rgrid = paw_r_LogGrid();
    Zion = paw_get_ion_charge();

    /*check if the occupied orbitals are done*/
    if (!(occupied_orbitals_done))
    {
        printf("cannot calculate unoccupied states\n");
        printf("calculate occupied states first\n");
    }

    /*get Kohn-Sham potential*/
    V = paw_get_kohn_sham_potential();

    for (i=Nvalence; i<= Nbound-1; i++)
    {

        state=paw_bound_state_test(l[i],V);
        if (state==0)
        {
            printf("This potential has no bound states with n=%d l=%d\n",n[i],l[i]);
            printf("please change your input file\n");
            exit(1);
        }
        else
        {
            if (Solver_Type==Schrodinger)
            {
               status = paw_R_Schrodinger(n[i],l[i],V,
                                          &eigenvalue[i],psi[i],psi_prime[i]);
            }
            else
            {
               status = paw_R_Pauli(n[i],l[i],Zion,V,
                                          &eigenvalue[i],psi[i],psi_prime[i]);
            }

        }

        if (!(status))
        {
            printf("This potential has no bound states with n=%d l=%d\n",n[i],l[i]);
            printf("please change your input file\n");
            exit(1);
        }


        /*orthogonalize to lower orbitals*/
        for (j=0;j<=i-1;j++)
        {
            if (l[i]==l[j])
            {
                sum = paw_dot_product(psi[i],psi[j]);
                for (k=0;k<=Ngrid-1;k++)
                    psi[i][k] = psi[i][k] - sum*psi[j][k];
            }

        }

        for (k=0;k<=Ngrid-1;k++)
            psi_tmp[k] = pow((psi[i][k]/rgrid[k]),2.0);

        sum = paw_Integrate_LogGrid(psi_tmp);

        for (k=0;k<=Ngrid-1;k++)
            psi[i][k]=psi[i][k]/pow(sum,0.5);
    }


}
コード例 #5
0
ファイル: paw_output.c プロジェクト: 000Justin000/nwchem
void paw_generate_basis_file(char *outfile)
{
    char*   atom_name;
    FILE    *fp;
    int     i;
    int     k;
    double tmp;
    double *Vpseudo;
    double *rho_core;
    double *rho_core_ps;

    int nbasis;
    int Ngrid;
    double *rgrid;
    int* prin_n;
    int* prin_n_ps;
    int *l;
    double* e;
    double** psi;
    double** psi_ps0;
    double** psi_prime;
    double** psi_ps;
    double** psi_ps_prime;
    double** prj_ps;
    double** prj_ps0;

    Ngrid = paw_N_LogGrid();
    rgrid = paw_r_LogGrid();

    atom_name = paw_get_atom_name();
    nbasis    = paw_get_nbasis();


    prin_n    = paw_get_pointer_paw_n_array();
    prin_n_ps = paw_get_pointer_paw_n_ps_array();
    l         = paw_get_pointer_paw_l_array();
    e         = paw_get_pointer_paw_e_array();

    psi          = paw_get_pointer_paw_psi_array();
    psi_ps       = paw_get_pointer_paw_psi_ps_array();
    psi_prime    = paw_get_pointer_paw_psi_prime_array();
    psi_ps_prime = paw_get_pointer_paw_psi_ps_prime_array();
    prj_ps       = paw_get_pointer_paw_prj_ps_array();
    prj_ps0       = paw_get_pointer_paw_prj_ps0_array();

    rho_core    = paw_get_pointer_core_density();
    rho_core_ps = paw_get_pointer_ps_core_density();

    Vpseudo = paw_get_pointer_pseudopotential();

    psi_ps0 =  paw_get_pointer_paw_psi_ps_unscr_array();

    /* output the basis file */
    /*sprintf(output, "%s_basis", atom_name);*/
    if (paw_debug()) printf("paw basis file generated: %s\n",outfile);
    fp = fopen(outfile, "w+");

    fprintf(fp,"4\n"); /*dummy tag*/    /* new*/
    fprintf(fp,"%s\n",atom_name);    /* new*/
    fprintf(fp,"%lf\n",paw_get_Zvalence());    /* new*/
    fprintf(fp,"%15.11e\n",rgrid[0]);

    fprintf(fp,"%15.11e\n",rgrid[Ngrid-1]);

    fprintf(fp,"%d\n",Ngrid);

    fprintf(fp,"%d\n",nbasis);

    /* printout cutoff radii */    /* new*/
    for (i=0; i<nbasis; ++i) fprintf(fp,"%le ",paw_get_r_orbital(i));    /* new*/
    fprintf(fp,"\n");    /* new*/

    fprintf(fp,"%d\n",paw_get_max_i_r_orbital());
    fprintf(fp,"%s\n",paw_get_comment());    /* new*/

    fprintf(fp,"%15.11e\n",paw_get_core_kinetic_energy());

    for ( i = 0; i < nbasis; ++i)
        fprintf(fp, "%d\t %15.11e\t %d\t %d\n",prin_n[i],e[i],prin_n_ps[i],l[i]);

    for ( i = 0; i <= nbasis-1; i++)
    {
        for (k = 0; k <= Ngrid-1; k++)
            fprintf(fp, "%15.11e \n",psi[i][k]);
    }


    for ( i = 0; i <= nbasis-1; i++)
    {
        for (k = 0; k <= Ngrid-1; k++)
        {
            tmp = psi_prime[i][k]/(rgrid[k]*paw_log_amesh_LogGrid());
            fprintf(fp, "%15.11e \n",psi_prime[i][k]/(rgrid[k]*paw_log_amesh_LogGrid()));
        }
    }


    for ( i = 0; i <= nbasis-1; i++)
    {
        for (k = 0; k <= Ngrid-1; k++)
            fprintf(fp, "%15.11e \n",psi_ps[i][k]);
    }


    for ( i = 0; i <= nbasis-1; i++)
    {
        for (k = 0; k <= Ngrid-1; k++)
        {
            tmp = psi_ps_prime[i][k]/(rgrid[k]*paw_log_amesh_LogGrid());
            fprintf(fp, "%15.11e \n",psi_ps_prime[i][k]/(rgrid[k]*paw_log_amesh_LogGrid()));
        }
    }


    for ( i = 0; i <= nbasis-1; i++)
    {
        for (k = 0; k <= Ngrid-1; k++)
            fprintf(fp, "%15.11e \n",prj_ps[i][k]);
    }

    for (k = 0; k <= Ngrid-1; k++)
    {
        fprintf(fp, "%15.11e \n",rho_core[k]/(4.0*PI));
    }


    for (k = 0; k <= Ngrid-1; k++)
    {
        fprintf(fp, "%15.11e \n",rho_core_ps[k]/(4.0*PI));
    }


    for (k = 0; k <= Ngrid-1; k++)
    {
        fprintf(fp, "%15.11e \n",Vpseudo[k]);
    }


    fprintf(fp,"%15.11e\n",paw_get_sigma_comp());

    fprintf(fp,"%15.11e\n",paw_get_ion_charge());


    for ( i = 0; i <= nbasis-1; i++)
    {
        for (k = 0; k <= Ngrid-1; k++)
            fprintf(fp, "%15.11e \n",prj_ps0[i][k]);
    }

    fclose(fp);

}