C++ (Cpp) processGenePredの例

コード例 #1

ファイル: refSeqGet.c プロジェクト: elmargb/kentUtils

static void getGeneAnns(struct sqlConnection *conn, struct hash *refSeqVerInfoTbl, char *outFile)
/* get request genePred annotations from database */
{
struct genePred *gps = genePredReaderLoadQuery(conn, "refGene", NULL);
slSort(&gps, genePredNameCmp);
FILE *fh = mustOpen(outFile, "w");
struct genePred *gp;
for (gp = gps; gp != NULL; gp = gp->next)
    processGenePred(fh, refSeqVerInfoTbl, gp);
carefulClose(&fh);
genePredFreeList(&gps);
}

コード例 #2

ファイル: refSeqGet.c プロジェクト: CEpBrowser/CEpBrowser--from-UCSC-CGI-BIN

static void getGeneAnns(struct sqlConnection *conn, struct hash *refSeqVerInfoTbl, char *outFile)
/* get request genePred annotations from database */
{
struct genePredReader *gpr = genePredReaderQuery(conn, "refGene", NULL);
FILE *fh = mustOpen(outFile, "w");
struct genePred *gp;
while ((gp = genePredReaderNext(gpr)) != NULL)
    {
    processGenePred(fh, refSeqVerInfoTbl, gp);
    genePredFree(&gp);
    }
carefulClose(&fh);
genePredReaderFree(&gpr);
}