C++ (Cpp) readTreeStructの例

コード例 #1

ファイル: phylosummary.cpp プロジェクト: Cryomics-Lab/mothur

PhyloSummary::PhyloSummary(string refTfile, GroupMap* g, bool r, int p){
	try {
		m = MothurOut::getInstance();
		maxLevel = 0;
		ignore = false;
        numSeqs = 0;
        relabund = r;
        printlevel = p;
		
		groupmap = g;
        ct = NULL;
				
		//check for necessary files
		string taxFileNameTest = m->getFullPathName((refTfile.substr(0,refTfile.find_last_of(".")+1) + "tree.sum"));
		ifstream FileTest(taxFileNameTest.c_str());
		
		if (!FileTest) { 
			m->mothurOut("Error: can't find " + taxFileNameTest + "."); m->mothurOutEndLine(); exit(1);
		}else{
			readTreeStruct(FileTest);
		}
		
		tree[0].rank = "0";
		assignRank(0);

	}
	catch(exception& e) {
		m->errorOut(e, "PhyloSummary", "PhyloSummary");
		exit(1);
	}
}

コード例 #2

ファイル: phylosummary.cpp プロジェクト: azmfaridee/mothur

PhyloSummary::PhyloSummary(string refTfile, CountTable* c){
	try {
		m = MothurOut::getInstance();
		maxLevel = 0;
		ignore = false;
        numSeqs = 0;
		
		ct = c;
        groupmap = NULL;
        
		//check for necessary files
        if (refTfile == "saved") { ReferenceDB* rdb = ReferenceDB::getInstance(); refTfile = rdb->getSavedTaxonomy(); }
		string taxFileNameTest = m->getFullPathName((refTfile.substr(0,refTfile.find_last_of(".")+1) + "tree.sum"));
		ifstream FileTest(taxFileNameTest.c_str());
		
		if (!FileTest) { 
			m->mothurOut("Error: can't find " + taxFileNameTest + "."); m->mothurOutEndLine(); exit(1);
		}else{
			readTreeStruct(FileTest);
		}
		
		tree[0].rank = "0";
		assignRank(0);
        
	}
	catch(exception& e) {
		m->errorOut(e, "PhyloSummary", "PhyloSummary");
		exit(1);
	}
}