void AMEXAFSScanConfiguration::dbLoadRegions(const QString &exafsRegionsString){
if(exafsRegionsString.isEmpty())
return;
QStringList allRegions = exafsRegionsString.split("\n", QString::SkipEmptyParts);
QStringList oneRegion;
bool addRegionSuccess = false;
for(int x = 0; x < allRegions.count(); x++){
oneRegion = allRegions.at(x).split(",", QString::SkipEmptyParts);
// Legacy Acquaman XAS settings (version 1.0)
if (oneRegion.count() == 3)
addRegionSuccess = addRegion(x, oneRegion.at(0).toDouble(), oneRegion.at(1).toDouble(), oneRegion.at(2).toDouble());
// Another legacy Acquaman XAS settings version 1.1
else if (oneRegion.at(0) == "xasVersion1.1"){
addRegionSuccess = addRegion(x, oneRegion.at(1).toDouble(), oneRegion.at(2).toDouble(), oneRegion.at(3).toDouble(), oneRegion.at(6).toDouble());
addRegionSuccess &= setRegionElasticStart(x, oneRegion.at(4).toInt() == 1 ? true : false);
addRegionSuccess &= setRegionElasticEnd(x, oneRegion.at(5).toInt() == 1 ? true : false);
}
// Beginning of a more succinct usage of AMRegions. Version 1.0
else if (oneRegion.at(0) == "regionsVersion1.0"){
addRegionSuccess = addRegion(x, oneRegion.at(1).toDouble(), oneRegion.at(2).toDouble(), oneRegion.at(3).toDouble(), oneRegion.at(6).toDouble());
addRegionSuccess &= setRegionElasticStart(x, oneRegion.at(4).toInt() == 1 ? true : false);
addRegionSuccess &= setRegionElasticEnd(x, oneRegion.at(5).toInt() == 1 ? true : false);
addRegionSuccess &= setRegionUnits(x, oneRegion.at(7));
addRegionSuccess &= setRegionTimeUnits(x, oneRegion.at(8));
}
else if (oneRegion.at(0) == "exafsVersion1.0"){
addRegionSuccess = addRegion(x, oneRegion.at(4).toDouble(), oneRegion.at(5).toDouble(), oneRegion.at(6).toDouble(), oneRegion.at(9).toDouble());
addRegionSuccess &= setRegionType(x, oneRegion.at(1) == "Energy" ? AMEXAFSRegion::Energy : AMEXAFSRegion::kSpace);
addRegionSuccess &= setRegionIsRelative(x, oneRegion.at(3).toInt() == 1 ? true : false);
addRegionSuccess &= setRegionEdgeEnergy(x, oneRegion.at(2).toDouble());
addRegionSuccess &= setRegionElasticStart(x, oneRegion.at(7).toInt() == 1 ? true : false);
addRegionSuccess &= setRegionElasticEnd(x, oneRegion.at(8).toInt() == 1 ? true : false);
addRegionSuccess &= setRegionUnits(x, oneRegion.at(10));
addRegionSuccess &= setRegionTimeUnits(x, oneRegion.at(11));
if (x == 0){
exafsRegions()->setDefaultEdgeEnergy(regionEdgeEnergy(x));
exafsRegions()->setDefaultIsRelative(regionIsRelative(x));
}
}
if (!addRegionSuccess)
AMErrorMon::report(AMErrorReport(this,
AMErrorReport::Alert,
0,
QString("There was an error reloading the scan region #%1, when reloading this scan from the database. Your database might be corrupted. Please report this bug to the Acquaman developers.").arg(x)));
}
}
bool UniPAX::RnaRegionReference::update(PersistenceManager& manager)
{
// check single pointer if object was merged
if (manager.isMerged(getRegionType()))
{
setRegionType(boost::dynamic_pointer_cast<SequenceRegionVocabulary>(manager.getMergedObject(getRegionType())));
}
if (manager.isMerged(getOrganism()))
{
setOrganism(boost::dynamic_pointer_cast<BioSource>(manager.getMergedObject(getOrganism())));
}
if (manager.isMerged(getAbsoluteRegion()))
{
setAbsoluteRegion(boost::dynamic_pointer_cast<SequenceLocation>(manager.getMergedObject(getAbsoluteRegion())));
}
if (manager.isMerged(getSubRegion()))
{
setSubRegion(boost::dynamic_pointer_cast<EntityReference>(manager.getMergedObject(getSubRegion())));
}
return UniPAX::EntityReference::update(manager);
}
bool UniPAX::RnaRegionReference::merge(RnaRegionReference& object)
{
if (subRegion != 0)
{
if (object.getSubRegion() != 0)
{
if (subRegion->getUnipaxId() != object.getSubRegion()->getUnipaxId())
{
std::cerr << "Error during merging: UniPAX::RnaRegionReference::subRegion not equal ..."
<< subRegion->getUnipaxId() << " != " << object.getSubRegion()->getUnipaxId() << std::endl;
return false;
}
}
}
else
{
setSubRegion(object.getSubRegion());
}
if (regionType != 0)
{
if (object.getRegionType() != 0)
{
if (regionType->getUnipaxId() != object.getRegionType()->getUnipaxId())
{
std::cerr << "Error during merging: UniPAX::RnaRegionReference::regionType not equal ..."
<< regionType->getUnipaxId() << " != " << object.getRegionType()->getUnipaxId() << std::endl;
return false;
}
}
}
else
{
setRegionType(object.getRegionType());
}
if (organism != 0)
{
if (object.getOrganism() != 0)
{
if (organism->getUnipaxId() != object.getOrganism()->getUnipaxId())
{
std::cerr << "Error during merging: UniPAX::RnaRegionReference::organism not equal ..."
<< organism->getUnipaxId() << " != " << object.getOrganism()->getUnipaxId() << std::endl;
return false;
}
}
}
else
{
setOrganism(object.getOrganism());
}
if (absoluteRegion != 0)
{
if (object.getAbsoluteRegion() != 0)
{
if (absoluteRegion->getUnipaxId() != object.getAbsoluteRegion()->getUnipaxId())
{
std::cerr << "Error during merging: UniPAX::RnaRegionReference::absoluteRegion not equal ..."
<< absoluteRegion->getUnipaxId() << " != " << object.getAbsoluteRegion()->getUnipaxId() << std::endl;
return false;
}
}
}
else
{
setAbsoluteRegion(object.getAbsoluteRegion());
}
if (!object.getSequence().empty())
{
if (!getSequence().empty())
{
if (getSequence() != object.getSequence())
{
std::cerr << "Error during merging: UniPAX::RnaRegionReference::sequence not equal ..."
<< getSequence() << " != " << object.getSequence() << std::endl;
return false;
}
}
else
setSequence(object.getSequence());
}
return UniPAX::EntityReference::merge(object);
}
