void ConfigSetup::Init(const char *fileName)
{
std::vector<std::string> line;
//ADDED LINES TO GET PREFIX PATH AND
//CONVERT CHAR ARRY TO STRING TYPE TO GET PREFIX PATH
//string prefix;
std::string inputString(fileName);
size_t found = inputString.rfind('/');
if (found != std::string::npos)
prefix = inputString.substr(0, inputString.find_last_of('/')) + '/';
//END ADD LINE
reader.Open(fileName);
while(reader.readNextLine(line))
{
if(line[0] == "Restart") {
in.restart.enable = checkBool(line[1]);
} else if(line[0] == "FirstStep") {
in.restart.step = stringtoi(line[1]);
} else if(line[0] == "PRNG") {
in.prng.kind = line[1];
} else if(line[0] == "Random_Seed") {
in.prng.seed = stringtoi(line[1]);
} else if(line[0] == "ParaTypeCHARMM") {
if(checkBool(line[1]))
{
in.ffKind.numOfKinds++;
in.ffKind.isEXOTIC = false;
in.ffKind.isMARTINI = false;
in.ffKind.isCHARMM = true;
std::cout << "REMINDER: CHARMM force field has been selected!" << std::endl;
}
} else if(line[0] == "ParaTypeEXOTIC") {
if(checkBool(line[1]))
{
in.ffKind.numOfKinds++;
in.ffKind.isCHARMM = false;
in.ffKind.isMARTINI = false;
in.ffKind.isEXOTIC = true;
std::cout << "REMINDER: EXOTIC force field has been selected!" << std::endl;
}
} else if(line[0] == "ParaTypeMARTINI") {
if(checkBool(line[1]))
{
in.ffKind.numOfKinds ++;
in.ffKind.isEXOTIC = false;
in.ffKind.isMARTINI = true;
in.ffKind.isCHARMM = true;
std::cout << "REMINDER: MARTINI force field has been selected!" << std::endl;
}
} else if(line[0] == "Parameters") {
in.files.param.name = prefix + line[1]; //ADDED PREFIX
} else if(line[0] == "Coordinates") {
uint boxnum = stringtoi(line[1]);
if(boxnum >= BOX_TOTAL)
{
std::cout<< "Error: This simulation requires only " << BOX_TOTAL << " number of PDB file(s)!" << std::endl;
exit(0);
}
in.files.pdb.name[boxnum] = prefix + line[2]; //ADDED PREFIX
} else if(line[0] == "Structure") {
uint boxnum = stringtoi(line[1]);
if(boxnum >= BOX_TOTAL)
{
std::cout<< "Error: This simulation requires only " << BOX_TOTAL << " number of PSF file(s)!" << std::endl;
exit(0);
}
in.files.psf.name[boxnum] = prefix + line[2]; //ADDED PREFIX
}
#if ENSEMBLE == GEMC
else if(line[0] == "GEMC")
{
if(line[1] == "NVT")
{
sys.gemc.kind = mv::GEMC_NVT;
std::cout<< " NVT_GEMC simulation has been selected " << std::endl;
}
else if(line[1] == "NPT")
{
sys.gemc.kind = mv::GEMC_NPT;
std::cout<< " NPT_GEMC simulation has been selected " << std::endl;
}
}
else if(line[0] == "Pressure")
{
sys.gemc.pressure = stringtod(line[1]);
std::cout<< " Pressure of system has been set to " << sys.gemc.pressure << " bar " << std::endl;
sys.gemc.pressure *= unit::BAR_TO_K_MOLECULE_PER_A3;
}
#endif
else if(line[0] == "Temperature")
{
sys.T.inKelvin = stringtod(line[1]);
}
else if(line[0] == "Potential")
{
if(line[1] == "VDW")
sys.ff.VDW_KIND = sys.ff.VDW_STD_KIND;
else if(line[1] == "SHIFT")
sys.ff.VDW_KIND = sys.ff.VDW_SHIFT_KIND;
else if(line[1] == "SWITCH")
sys.ff.VDW_KIND = sys.ff.VDW_SWITCH_KIND;
}
else if(line[0] == "LRC")
{
sys.ff.doTailCorr = checkBool(line[1]);
}
else if(line[0] == "Rswitch")
{
sys.ff.rswitch = stringtod(line[1]);
}
else if(line[0] == "Rcut")
{
sys.ff.cutoff = stringtod(line[1]);
}
else if(line[0] == "Exclude")
{
if(line[1] == sys.exclude.EXC_ONETWO)
sys.exclude.EXCLUDE_KIND = sys.exclude.EXC_ONETWO_KIND;
else if(line[1] == sys.exclude.EXC_ONETHREE)
sys.exclude.EXCLUDE_KIND = sys.exclude.EXC_ONETHREE_KIND;
else if(line[1] == sys.exclude.EXC_ONEFOUR)
sys.exclude.EXCLUDE_KIND = sys.exclude.EXC_ONEFOUR_KIND;
}
else if(line[0] == "Ewald")
{
sys.elect.ewald = checkBool(line[1]);
sys.elect.readEwald = true;
}
else if(line[0] == "ElectroStatic")
{
sys.elect.enable = checkBool(line[1]);
sys.elect.readElect = true;
}
else if(line[0] == "Tolerance")
{
sys.elect.tolerance = stringtod(line[1]);
sys.elect.alpha = sqrt(-1 * log(sys.elect.tolerance))/
sys.ff.cutoff;
sys.elect.recip_rcut = 2 * (-log(sys.elect.tolerance))/
sys.ff.cutoff;
}
else if(line[0] == "1-4scaling")
{
sys.elect.oneFourScale = stringtod(line[1]);
}
else if(line[0] == "Dielectric")
{
sys.elect.dielectric = stringtod(line[1]);
}
else if(line[0] == "RunSteps")
{
sys.step.total = stringtoi(line[1]);
}
else if(line[0] == "EqSteps")
{
sys.step.equil = stringtoi(line[1]);
}
else if(line[0] == "AdjSteps")
{
sys.step.adjustment = stringtoi(line[1]);
}
else if(line[0] == "DisFreq")
{
sys.moves.displace = stringtod(line[1]);
}
else if(line[0] == "IntraSwapFreq")
{
sys.moves.intraSwap = stringtod(line[1]);
}
else if(line[0] == "RotFreq")
{
sys.moves.rotate = stringtod(line[1]);
}
#ifdef VARIABLE_VOLUME
else if(line[0] == "VolFreq")
{
sys.moves.volume = stringtod(line[1]);
}
#endif
#ifdef VARIABLE_PARTICLE_NUMBER
else if(line[0] == "SwapFreq")
{
#if ENSEMBLE == NVT
sys.moves.transfer = 0.000;
#else
sys.moves.transfer = stringtod(line[1]);
#endif
}
#endif
else if(line[0] == "BoxDim") {
uint box = stringtoi(line[1]);
if(box < BOX_TOTAL)
{
XYZ temp;
sys.volume.boxCoordRead++;
sys.volume.hasVolume = (sys.volume.boxCoordRead == BOX_TOTAL);
temp.x = stringtod(line[2]);
temp.y = stringtod(line[3]);
temp.z = stringtod(line[4]);
sys.volume.axis.Set(box, temp);
}
else
{
std::cout<< "Error: This simulation requires only " << BOX_TOTAL << " number of box dimension(s)!" << std::endl;
exit(0);
}
}
#ifdef VARIABLE_PARTICLE_NUMBER
else if(line[0] == "CBMC_First")
{
sys.cbmcTrials.nonbonded.first = stringtoi(line[1]);
}
else if(line[0] == "CBMC_Nth")
{
sys.cbmcTrials.nonbonded.nth = stringtoi(line[1]);
}
else if(line[0] == "CBMC_Ang")
{
sys.cbmcTrials.bonded.ang = stringtoi(line[1]);
}
else if(line[0] == "CBMC_Dih")
{
sys.cbmcTrials.bonded.dih = stringtoi(line[1]);
}
#endif
#if ENSEMBLE == GCMC
else if(line[0] == "ChemPot") {
if(line.size() != 3)
{
std::cout << "Error: Chemical potential parameters have not been specified!" << std::endl;
exit(0);
}
std::string resName = line[1];
double val = stringtod(line[2]);
sys.chemPot.cp[resName] = val;
}
#endif
else if(line[0] == "OutputName")
{
out.statistics.settings.uniqueStr.val = line[1];
}
else if(line[0] == "CoordinatesFreq")
{
out.state.settings.enable = checkBool(line[1]);
out.state.settings.frequency = stringtoi(line[2]);
}
else if(line[0] == "RestartFreq")
{
out.restart.settings.enable = checkBool(line[1]);
out.restart.settings.frequency = stringtoi(line[2]);
}
else if(line[0] == "ConsoleFreq")
{
out.console.enable = checkBool(line[1]);
out.console.frequency = stringtoi(line[2]);
}
else if(line[0] == "BlockAverageFreq")
{
out.statistics.settings.block.enable = checkBool(line[1]);
out.statistics.settings.block.frequency = stringtoi(line[2]);
}
else if(line[0] == "FluctuationFreq")
{
out.statistics.settings.fluct.enable = checkBool(line[1]);
out.statistics.settings.fluct.frequency = stringtoi(line[2]);
}
#if ENSEMBLE == GCMC
else if(line[0] == "HistogramFreq")
{
out.statistics.settings.hist.enable = checkBool(line[1]);
out.statistics.settings.hist.frequency = stringtoi(line[2]);
}
else if(line[0] == "DistName")
{
out.state.files.hist.histName = line[1];
}
else if(line[0] == "HistName")
{
out.state.files.hist.sampleName = line[1];
}
else if(line[0] == "RunNumber")
{
out.state.files.hist.number = line[1];
}
else if(line[0] == "RunLetter")
{
out.state.files.hist.letter = line[1];
}
else if(line[0] == "SampleFreq")
{
out.state.files.hist.stepsPerHistSample = stringtoi(line[1]);
}
#endif
else if(line[0] == "OutEnergy") {
out.statistics.vars.energy.block = checkBool(line[1]);
out.statistics.vars.energy.fluct = checkBool(line[2]);
out.statistics.vars.energy.hist = checkBool(line[3]);
} else if(line[0] == "OutPressure") {
out.statistics.vars.pressure.block = checkBool(line[1]);
out.statistics.vars.pressure.fluct = checkBool(line[2]);
out.statistics.vars.pressure.hist = checkBool(line[3]);
}
#ifdef VARIABLE_PARTICLE_NUMBER
else if(line[0] == "OutMolNum") {
out.statistics.vars.molNum.block = checkBool(line[1]);
out.statistics.vars.molNum.fluct = checkBool(line[2]);
out.statistics.vars.molNum.hist = checkBool(line[3]);
} else if(line[0] == "OutAcceptAngles") {
out.statistics.vars.acceptAngles.block = checkBool(line[1]);
out.statistics.vars.acceptAngles.fluct = checkBool(line[2]);
out.statistics.vars.acceptAngles.hist = checkBool(line[3]);
}
#endif
#ifdef VARIABLE_DENSITY
else if(line[0] == "OutDensity") {
out.statistics.vars.density.block = checkBool(line[1]);
out.statistics.vars.density.fluct = checkBool(line[2]);
out.statistics.vars.density.hist = checkBool(line[3]);
}
#endif
#ifdef VARIABLE_VOLUME
else if(line[0] == "OutVolume") {
out.statistics.vars.volume.block = checkBool(line[1]);
out.statistics.vars.volume.fluct = checkBool(line[2]);
out.statistics.vars.volume.hist = checkBool(line[3]);
}
#endif
else{
cout << "Warning: Unknown input " << line[0] << "!" << endl;
}
// Clear and get ready for the next line
line.clear();
}
//*********** Fill in the default values if not specified ***********//
fillDefaults();
//*********** Verify inputs ***********//
verifyInputs();
}
bool CREAMClient::stat(const std::string& jobid, Job& job) {
logger.msg(VERBOSE, "Creating and sending a status request");
action = "JobInfo";
PayloadSOAP req(cream_ns);
XMLNode xjobId = req.NewChild("types:" + action + "Request").NewChild("types:jobId");
xjobId.NewChild("types:id") = jobid;
xjobId.NewChild("types:creamURL") = client->GetURL().str();
XMLNode response;
if (!process(req, response)) return false;
XMLNode jobInfoNode;
jobInfoNode = response["result"]["jobInfo"];
XMLNode lastStatusNode = jobInfoNode.Path("status").back();
if (lastStatusNode["name"]) {
job.State = JobStateCREAM((std::string)lastStatusNode["name"]);
}
if (lastStatusNode["failureReason"]) {
job.Error.push_back((std::string)lastStatusNode["failureReason"]);
}
if (!job.State) {
logger.msg(VERBOSE, "Unable to retrieve job status.");
return false;
}
if (ISVALID(jobInfoNode["jobId"]["id"])) {
job.IDFromEndpoint = (std::string)jobInfoNode["jobId"]["id"];
}
if (ISVALID(jobInfoNode["type"]))
job.Type = (std::string)jobInfoNode["type"];
if (ISVALID(jobInfoNode["JDL"])) {
job.JobDescription = "egee:jdl";
job.JobDescriptionDocument = (std::string)jobInfoNode["JDL"];
std::list<JobDescription> jds;
if (JobDescription::Parse(job.JobDescriptionDocument, jds) && !jds.empty()) {
if (!jds.front().Application.Input.empty())
job.StdIn = jds.front().Application.Input;
if (!jds.front().Application.Output.empty())
job.StdOut = jds.front().Application.Output;
if (!jds.front().Application.Error.empty())
job.StdErr = jds.front().Application.Error;
if (!jds.front().Resources.QueueName.empty()) {
job.Queue = jds.front().Resources.QueueName;
}
}
}
if (ISVALID(lastStatusNode["exitCode"]))
job.ExitCode = stringtoi((std::string)lastStatusNode["exitCode"]);
if (ISVALID(jobInfoNode["delegationProxyInfo"])) {
/* Format of delegationProxyInfo node.
[ isRFC="<true|false>";
valid from="<mon>/<date>/<yy> <hour>:<min> <AM|PM> (<timezone>)";
valid to="<mon>/<date>/<yy> <hour>:<min> <AM|PM> (<timezone>)";
holder DN="<DN>";
holder AC issuer="<DN>";
VO="<VO-name>";
AC issuer="<DN>";
VOMS attributes=<VOMS-Attributes>
]
*/
std::string delegationProxy = (std::string)jobInfoNode["delegationProxyInfo"];
std::size_t lBracketPos = delegationProxy.find('['), rBracketPos = delegationProxy.rfind(']');
if (lBracketPos != std::string::npos && rBracketPos != std::string::npos) {
delegationProxy = trim(delegationProxy.substr(lBracketPos, rBracketPos - lBracketPos));
}
std::list<std::string> tDelegInfo;
tokenize(delegationProxy, tDelegInfo, ";");
for (std::list<std::string>::iterator it = tDelegInfo.begin();
it != tDelegInfo.end(); ++it) {
std::list<std::string> keyValuePair;
tokenize(*it, keyValuePair, "=", "\"", "\"");
if (keyValuePair.size() != 2) continue;
if (lower(trim(keyValuePair.front())) == "holder dn") job.Owner = trim(keyValuePair.back(), " \"");
if (lower(trim(keyValuePair.front())) == "valid to") stringtoTime(trim(keyValuePair.back(), " \""), job.ProxyExpirationTime);
}
}
if (ISVALID(jobInfoNode["localUser"]))
job.LocalOwner = (std::string)jobInfoNode["localUser"];
if (ISVALID(jobInfoNode["lastCommand"])) {
int job_register_id_first = -1;
int job_register_id_last = -1;
int job_start_id_first = -1;
int job_start_id_last = -1;
int local_id = 0;
while (true) {
if (!jobInfoNode["lastCommand"][local_id])
break;
if ((std::string)jobInfoNode["lastCommand"][local_id]["name"] == "JOB_REGISTER") {
if (job_register_id_first == -1 && job_register_id_last == -1) {
job_register_id_first = local_id;
job_register_id_last = local_id;
}
else if (job_register_id_last > -1)
job_register_id_last = local_id;
} //end of the JOB_REGISTER
if ((std::string)jobInfoNode["lastCommand"][local_id]["name"] == "JOB_START") {
if (job_start_id_first == -1 && job_start_id_last == -1) {
job_start_id_first = local_id;
job_start_id_last = local_id;
}
else if (job_start_id_last > -1)
job_start_id_last = local_id;
} //end of the JOB_START
local_id++;
}
//dependent on JOB_REGISTER
if (job_register_id_first > -1)
if (ISVALID(jobInfoNode["lastCommand"][job_register_id_first]["creationTime"])) {
Time time((std::string)jobInfoNode["lastCommand"][job_register_id_first]["creationTime"]);
if (time.GetTime() != -1)
job.SubmissionTime = time;
}
if (job_register_id_last > -1)
if (ISVALID(jobInfoNode["lastCommand"][job_register_id_last]["creationTime"])) {
Time time((std::string)jobInfoNode["lastCommand"][job_register_id_last]["creationTime"]);
if (time.GetTime() != -1)
job.CreationTime = time;
}
//end of the JOB_REGISTER
//dependent on JOB_START
if (job_start_id_first > -1) {
if (ISVALID(jobInfoNode["lastCommand"][job_start_id_first]["startSchedulingTime"])) {
Time time((std::string)jobInfoNode["lastCommand"][job_start_id_first]["startSchedulingTime"]);
if (time.GetTime() != -1)
job.ComputingManagerSubmissionTime = time;
}
if (ISVALID(jobInfoNode["lastCommand"][job_start_id_first]["startProcessingTime"])) {
Time time((std::string)jobInfoNode["lastCommand"][job_start_id_first]["startProcessingTime"]);
if (time.GetTime() != -1)
job.StartTime = time;
}
}
if (job_start_id_last > -1)
if (ISVALID(jobInfoNode["lastCommand"][job_start_id_last]["executionCompletedTime"])) {
Time time((std::string)jobInfoNode["lastCommand"][job_start_id_last]["executionCompletedTime"]);
if (time.GetTime() != -1)
job.ComputingManagerEndTime = time;
}
//end of the JOB_START
} //end of the LastCommand
if (ISVALID(lastStatusNode["timestamp"]) && (job.State() == "DONE-OK" || job.State() == "DONE-FAILED")) {
Time time((std::string)lastStatusNode["timestamp"]);
if (time.GetTime() != -1)
job.EndTime = time;
}
return true;
}
void GLUE2::ParseExecutionTargets(XMLNode glue2tree, std::list<ComputingServiceType>& targets) {
XMLNode GLUEService = glue2tree;
if(GLUEService.Name() != "ComputingService") {
GLUEService = glue2tree["ComputingService"];
}
for (; GLUEService; ++GLUEService) {
ComputingServiceType cs;
if (GLUEService["ID"]) {
cs->ID = (std::string)GLUEService["ID"];
}
if (GLUEService["Name"]) {
cs->Name = (std::string)GLUEService["Name"];
}
if (GLUEService["Capability"]) {
for (XMLNode n = GLUEService["Capability"]; n; ++n) {
cs->Capability.insert((std::string)n);
}
}
if (GLUEService["Type"]) {
cs->Type = (std::string)GLUEService["Type"];
} else {
logger.msg(VERBOSE, "The Service doesn't advertise its Type.");
}
if (GLUEService["QualityLevel"]) {
cs->QualityLevel = (std::string)GLUEService["QualityLevel"];
} else {
logger.msg(VERBOSE, "The ComputingService doesn't advertise its Quality Level.");
}
if (GLUEService["TotalJobs"]) {
cs->TotalJobs = stringtoi((std::string)GLUEService["TotalJobs"]);
}
if (GLUEService["RunningJobs"]) {
cs->RunningJobs = stringtoi((std::string)GLUEService["RunningJobs"]);
}
if (GLUEService["WaitingJobs"]) {
cs->WaitingJobs = stringtoi((std::string)GLUEService["WaitingJobs"]);
}
if (GLUEService["StagingJobs"]) {
cs->StagingJobs = stringtoi((std::string)GLUEService["StagingJobs"]);
}
if (GLUEService["SuspendedJobs"]) {
cs->SuspendedJobs = stringtoi((std::string)GLUEService["SuspendedJobs"]);
}
if (GLUEService["PreLRMSWaitingJobs"]) {
cs->PreLRMSWaitingJobs = stringtoi((std::string)GLUEService["PreLRMSWaitingJobs"]);
}
// The GLUE2 specification does not have attribute ComputingService.LocalRunningJobs
//if (GLUEService["LocalRunningJobs"]) {
// cs->LocalRunningJobs = stringtoi((std::string)GLUEService["LocalRunningJobs"]);
//}
// The GLUE2 specification does not have attribute ComputingService.LocalWaitingJobs
//if (GLUEService["LocalWaitingJobs"]) {
// cs->LocalWaitingJobs = stringtoi((std::string)GLUEService["LocalWaitingJobs"]);
//}
// The GLUE2 specification does not have attribute ComputingService.LocalSuspendedJobs
//if (GLUEService["LocalSuspendedJobs"]) {
// cs->LocalWaitingJobs = stringtoi((std::string)GLUEService["LocalSuspendedJobs"]);
//}
XMLNode xmlCENode = GLUEService["ComputingEndpoint"];
int endpointID = 0;
for(;(bool)xmlCENode;++xmlCENode) {
ComputingEndpointType ComputingEndpoint;
if (xmlCENode["URL"]) {
ComputingEndpoint->URLString = (std::string)xmlCENode["URL"];
} else {
logger.msg(VERBOSE, "The ComputingEndpoint has no URL.");
}
if (xmlCENode["HealthState"]) {
ComputingEndpoint->HealthState = (std::string)xmlCENode["HealthState"];
} else {
logger.msg(VERBOSE, "The Service advertises no Health State.");
}
if (xmlCENode["HealthStateInfo"]) {
ComputingEndpoint->HealthStateInfo = (std::string)xmlCENode["HealthStateInfo"];
}
if (xmlCENode["Capability"]) {
for (XMLNode n = xmlCENode["Capability"]; n; ++n) {
ComputingEndpoint->Capability.insert((std::string)n);
}
}
if (xmlCENode["QualityLevel"]) {
ComputingEndpoint->QualityLevel = (std::string)xmlCENode["QualityLevel"];
} else {
logger.msg(VERBOSE, "The ComputingEndpoint doesn't advertise its Quality Level.");
}
if (xmlCENode["Technology"]) {
ComputingEndpoint->Technology = (std::string)xmlCENode["Technology"];
}
if (xmlCENode["InterfaceName"]) {
ComputingEndpoint->InterfaceName = lower((std::string)xmlCENode["InterfaceName"]);
} else if (xmlCENode["Interface"]) { // No such attribute according to GLUE2 document. Legacy/backward compatibility?
ComputingEndpoint->InterfaceName = lower((std::string)xmlCENode["Interface"]);
} else {
logger.msg(VERBOSE, "The ComputingService doesn't advertise its Interface.");
}
if (xmlCENode["InterfaceVersion"]) {
for (XMLNode n = xmlCENode["InterfaceVersion"]; n; ++n) {
ComputingEndpoint->InterfaceVersion.push_back((std::string)n);
}
}
if (xmlCENode["InterfaceExtension"]) {
for (XMLNode n = xmlCENode["InterfaceExtension"]; n; ++n) {
ComputingEndpoint->InterfaceExtension.push_back((std::string)n);
}
}
if (xmlCENode["SupportedProfile"]) {
for (XMLNode n = xmlCENode["SupportedProfile"]; n; ++n) {
ComputingEndpoint->SupportedProfile.push_back((std::string)n);
}
}
if (xmlCENode["Implementor"]) {
ComputingEndpoint->Implementor = (std::string)xmlCENode["Implementor"];
}
if (xmlCENode["ImplementationName"]) {
if (xmlCENode["ImplementationVersion"]) {
ComputingEndpoint->Implementation =
Software((std::string)xmlCENode["ImplementationName"],
(std::string)xmlCENode["ImplementationVersion"]);
} else {
ComputingEndpoint->Implementation = Software((std::string)xmlCENode["ImplementationName"]);
}
}
if (xmlCENode["ServingState"]) {
ComputingEndpoint->ServingState = (std::string)xmlCENode["ServingState"];
} else {
logger.msg(VERBOSE, "The ComputingEndpoint doesn't advertise its Serving State.");
}
if (xmlCENode["IssuerCA"]) {
ComputingEndpoint->IssuerCA = (std::string)xmlCENode["IssuerCA"];
}
if (xmlCENode["TrustedCA"]) {
XMLNode n = xmlCENode["TrustedCA"];
while (n) {
// Workaround to drop non-conforming records generated by EGI services
std::string subject = (std::string)n;
if(CheckConformingDN(subject)) {
ComputingEndpoint->TrustedCA.push_back(subject);
}
++n; //The increment operator works in an unusual manner (returns void)
}
}
if (xmlCENode["DowntimeStart"]) {
ComputingEndpoint->DowntimeStarts = (std::string)xmlCENode["DowntimeStart"];
}
if (xmlCENode["DowntimeEnd"]) {
ComputingEndpoint->DowntimeEnds = (std::string)xmlCENode["DowntimeEnd"];
}
if (xmlCENode["Staging"]) {
ComputingEndpoint->Staging = (std::string)xmlCENode["Staging"];
}
if (xmlCENode["JobDescription"]) {
for (XMLNode n = xmlCENode["JobDescription"]; n; ++n) {
ComputingEndpoint->JobDescriptions.push_back((std::string)n);
}
}
if (xmlCENode["TotalJobs"]) {
ComputingEndpoint->TotalJobs = stringtoi((std::string)xmlCENode["TotalJobs"]);
}
if (xmlCENode["RunningJobs"]) {
ComputingEndpoint->RunningJobs = stringtoi((std::string)xmlCENode["RunningJobs"]);
}
if (xmlCENode["WaitingJobs"]) {
ComputingEndpoint->WaitingJobs = stringtoi((std::string)xmlCENode["WaitingJobs"]);
}
if (xmlCENode["StagingJobs"]) {
ComputingEndpoint->StagingJobs = stringtoi((std::string)xmlCENode["StagingJobs"]);
}
if (xmlCENode["SuspendedJobs"]) {
ComputingEndpoint->SuspendedJobs = stringtoi((std::string)xmlCENode["SuspendedJobs"]);
}
if (xmlCENode["PreLRMSWaitingJobs"]) {
ComputingEndpoint->PreLRMSWaitingJobs = stringtoi((std::string)xmlCENode["PreLRMSWaitingJobs"]);
}
// The GLUE2 specification does not have attribute ComputingEndpoint.LocalRunningJobs
//if (xmlCENode["LocalRunningJobs"]) {
// ComputingEndpoint->LocalRunningJobs = stringtoi((std::string)xmlCENode["LocalRunningJobs"]);
//}
// The GLUE2 specification does not have attribute ComputingEndpoint.LocalWaitingJobs
//if (xmlCENode["LocalWaitingJobs"]) {
// ComputingEndpoint->LocalWaitingJobs = stringtoi((std::string)xmlCENode["LocalWaitingJobs"]);
//}
// The GLUE2 specification does not have attribute ComputingEndpoint.LocalSuspendedJobs
//if (xmlCENode["LocalSuspendedJobs"]) {
// ComputingEndpoint->LocalSuspendedJobs = stringtoi((std::string)xmlCENode["LocalSuspendedJobs"]);
//}
cs.ComputingEndpoint.insert(std::pair<int, ComputingEndpointType>(endpointID++, ComputingEndpoint));
}
XMLNode xComputingShare = GLUEService["ComputingShare"];
int shareID = 0;
for (;(bool)xComputingShare;++xComputingShare) {
ComputingShareType ComputingShare;
if (xComputingShare["FreeSlots"]) {
ComputingShare->FreeSlots = stringtoi((std::string)xComputingShare["FreeSlots"]);
}
if (xComputingShare["FreeSlotsWithDuration"]) {
// Format: ns[:t] [ns[:t]]..., where ns is number of slots and t is the duration.
ComputingShare->FreeSlotsWithDuration.clear();
const std::string fswdValue = (std::string)xComputingShare["FreeSlotsWithDuration"];
std::list<std::string> fswdList;
tokenize(fswdValue, fswdList);
for (std::list<std::string>::iterator it = fswdList.begin();
it != fswdList.end(); it++) {
std::list<std::string> fswdPair;
tokenize(*it, fswdPair, ":");
long duration = LONG_MAX;
int freeSlots = 0;
if (fswdPair.size() > 2 || !stringto(fswdPair.front(), freeSlots) || (fswdPair.size() == 2 && !stringto(fswdPair.back(), duration)) ) {
logger.msg(VERBOSE, "The \"FreeSlotsWithDuration\" attribute published by \"%s\" is wrongly formatted. Ignoring it.");
logger.msg(DEBUG, "Wrong format of the \"FreeSlotsWithDuration\" = \"%s\" (\"%s\")", fswdValue, *it);
continue;
}
ComputingShare->FreeSlotsWithDuration[Period(duration)] = freeSlots;
}
}
if (xComputingShare["UsedSlots"]) {
ComputingShare->UsedSlots = stringtoi((std::string)xComputingShare["UsedSlots"]);
}
if (xComputingShare["RequestedSlots"]) {
ComputingShare->RequestedSlots = stringtoi((std::string)xComputingShare["RequestedSlots"]);
}
if (xComputingShare["Name"]) {
ComputingShare->Name = (std::string)xComputingShare["Name"];
}
if (xComputingShare["MaxWallTime"]) {
ComputingShare->MaxWallTime = (std::string)xComputingShare["MaxWallTime"];
}
if (xComputingShare["MaxTotalWallTime"]) {
ComputingShare->MaxTotalWallTime = (std::string)xComputingShare["MaxTotalWallTime"];
}
if (xComputingShare["MinWallTime"]) {
ComputingShare->MinWallTime = (std::string)xComputingShare["MinWallTime"];
}
if (xComputingShare["DefaultWallTime"]) {
ComputingShare->DefaultWallTime = (std::string)xComputingShare["DefaultWallTime"];
}
if (xComputingShare["MaxCPUTime"]) {
ComputingShare->MaxCPUTime = (std::string)xComputingShare["MaxCPUTime"];
}
if (xComputingShare["MaxTotalCPUTime"]) {
ComputingShare->MaxTotalCPUTime = (std::string)xComputingShare["MaxTotalCPUTime"];
}
if (xComputingShare["MinCPUTime"]) {
ComputingShare->MinCPUTime = (std::string)xComputingShare["MinCPUTime"];
}
if (xComputingShare["DefaultCPUTime"]) {
ComputingShare->DefaultCPUTime = (std::string)xComputingShare["DefaultCPUTime"];
}
if (xComputingShare["MaxTotalJobs"]) {
ComputingShare->MaxTotalJobs = stringtoi((std::string)xComputingShare["MaxTotalJobs"]);
}
if (xComputingShare["MaxRunningJobs"]) {
ComputingShare->MaxRunningJobs = stringtoi((std::string)xComputingShare["MaxRunningJobs"]);
}
if (xComputingShare["MaxWaitingJobs"]) {
ComputingShare->MaxWaitingJobs = stringtoi((std::string)xComputingShare["MaxWaitingJobs"]);
}
if (xComputingShare["MaxPreLRMSWaitingJobs"]) {
ComputingShare->MaxPreLRMSWaitingJobs = stringtoi((std::string)xComputingShare["MaxPreLRMSWaitingJobs"]);
}
if (xComputingShare["MaxUserRunningJobs"]) {
ComputingShare->MaxUserRunningJobs = stringtoi((std::string)xComputingShare["MaxUserRunningJobs"]);
}
if (xComputingShare["MaxSlotsPerJob"]) {
ComputingShare->MaxSlotsPerJob = stringtoi((std::string)xComputingShare["MaxSlotsPerJob"]);
}
if (xComputingShare["MaxStageInStreams"]) {
ComputingShare->MaxStageInStreams = stringtoi((std::string)xComputingShare["MaxStageInStreams"]);
}
if (xComputingShare["MaxStageOutStreams"]) {
ComputingShare->MaxStageOutStreams = stringtoi((std::string)xComputingShare["MaxStageOutStreams"]);
}
if (xComputingShare["SchedulingPolicy"]) {
ComputingShare->SchedulingPolicy = (std::string)xComputingShare["SchedulingPolicy"];
}
if (xComputingShare["MaxMainMemory"]) {
ComputingShare->MaxMainMemory = stringtoi((std::string)xComputingShare["MaxMainMemory"]);
}
if (xComputingShare["MaxVirtualMemory"]) {
ComputingShare->MaxVirtualMemory = stringtoi((std::string)xComputingShare["MaxVirtualMemory"]);
}
if (xComputingShare["MaxDiskSpace"]) {
ComputingShare->MaxDiskSpace = stringtoi((std::string)xComputingShare["MaxDiskSpace"]);
}
if (xComputingShare["DefaultStorageService"]) {
ComputingShare->DefaultStorageService = (std::string)xComputingShare["DefaultStorageService"];
}
if (xComputingShare["Preemption"]) {
ComputingShare->Preemption = ((std::string)xComputingShare["Preemption"] == "true") ? true : false;
}
if (xComputingShare["EstimatedAverageWaitingTime"]) {
ComputingShare->EstimatedAverageWaitingTime = (std::string)xComputingShare["EstimatedAverageWaitingTime"];
}
if (xComputingShare["EstimatedWorstWaitingTime"]) {
ComputingShare->EstimatedWorstWaitingTime = stringtoi((std::string)xComputingShare["EstimatedWorstWaitingTime"]);
}
if (xComputingShare["ReservationPolicy"]) {
ComputingShare->ReservationPolicy = stringtoi((std::string)xComputingShare["ReservationPolicy"]);
}
cs.ComputingShare.insert(std::pair<int, ComputingShareType>(shareID++, ComputingShare));
}
/*
* A ComputingShare is linked to multiple ExecutionEnvironments.
* Due to bug 2101 multiple ExecutionEnvironments per ComputingShare
* will be ignored. The ExecutionEnvironment information will only be
* stored if there is one ExecutionEnvironment associated with a
* ComputingShare.
*/
/*
* TODO: Store ExecutionEnvironment information in the list of
* ExecutionEnvironmentType objects and issue a warning when the
* resources published in multiple ExecutionEnvironment are
* requested in a job description document.
*/
int managerID = 0;
for (XMLNode xComputingManager = GLUEService["ComputingManager"]; (bool)xComputingManager; ++xComputingManager) {
ComputingManagerType ComputingManager;
if (xComputingManager["ProductName"]) {
ComputingManager->ProductName = (std::string)xComputingManager["ProductName"];
}
// The GlUE2 specification does not have attribute ComputingManager.Type
//if (xComputingManager["Type"]) {
// ComputingManager->Type = (std::string)xComputingManager["Type"];
//}
if (xComputingManager["ProductVersion"]) {
ComputingManager->ProductVersion = (std::string)xComputingManager["ProductVersion"];
}
if (xComputingManager["Reservation"]) {
ComputingManager->Reservation = ((std::string)xComputingManager["Reservation"] == "true");
}
if (xComputingManager["BulkSubmission"]) {
ComputingManager->BulkSubmission = ((std::string)xComputingManager["BulkSubmission"] == "true");
}
if (xComputingManager["TotalPhysicalCPUs"]) {
ComputingManager->TotalPhysicalCPUs = stringtoi((std::string)xComputingManager["TotalPhysicalCPUs"]);
}
if (xComputingManager["TotalLogicalCPUs"]) {
ComputingManager->TotalLogicalCPUs = stringtoi((std::string)xComputingManager["TotalLogicalCPUs"]);
}
if (xComputingManager["TotalSlots"]) {
ComputingManager->TotalSlots = stringtoi((std::string)xComputingManager["TotalSlots"]);
}
if (xComputingManager["Homogeneous"]) {
ComputingManager->Homogeneous = ((std::string)xComputingManager["Homogeneous"] == "true");
}
if (xComputingManager["NetworkInfo"]) {
for (XMLNode n = xComputingManager["NetworkInfo"]; n; ++n) {
ComputingManager->NetworkInfo.push_back((std::string)n);
}
}
if (xComputingManager["WorkingAreaShared"]) {
ComputingManager->WorkingAreaShared = ((std::string)xComputingManager["WorkingAreaShared"] == "true");
}
if (xComputingManager["WorkingAreaFree"]) {
ComputingManager->WorkingAreaFree = stringtoi((std::string)xComputingManager["WorkingAreaFree"]);
}
if (xComputingManager["WorkingAreaTotal"]) {
ComputingManager->WorkingAreaTotal = stringtoi((std::string)xComputingManager["WorkingAreaTotal"]);
}
if (xComputingManager["WorkingAreaLifeTime"]) {
ComputingManager->WorkingAreaLifeTime = (std::string)xComputingManager["WorkingAreaLifeTime"];
}
if (xComputingManager["CacheFree"]) {
ComputingManager->CacheFree = stringtoi((std::string)xComputingManager["CacheFree"]);
}
if (xComputingManager["CacheTotal"]) {
ComputingManager->CacheTotal = stringtoi((std::string)xComputingManager["CacheTotal"]);
}
for (XMLNode n = xComputingManager["Benchmark"]; n; ++n) {
double value;
if (n["Type"] && n["Value"] &&
stringto((std::string)n["Value"], value)) {
(*ComputingManager.Benchmarks)[(std::string)n["Type"]] = value;
} else {
logger.msg(VERBOSE, "Couldn't parse benchmark XML:\n%s", (std::string)n);
continue;
}
}
for (XMLNode n = xComputingManager["ApplicationEnvironments"]["ApplicationEnvironment"]; n; ++n) {
ApplicationEnvironment ae((std::string)n["AppName"], (std::string)n["AppVersion"]);
ae.State = (std::string)n["State"];
if (n["FreeSlots"]) {
ae.FreeSlots = stringtoi((std::string)n["FreeSlots"]);
}
//else {
// ae.FreeSlots = ComputingShare->FreeSlots; // Non compatible??, i.e. a ComputingShare is unrelated to the ApplicationEnvironment.
//}
if (n["FreeJobs"]) {
ae.FreeJobs = stringtoi((std::string)n["FreeJobs"]);
} else {
ae.FreeJobs = -1;
}
if (n["FreeUserSeats"]) {
ae.FreeUserSeats = stringtoi((std::string)n["FreeUserSeats"]);
} else {
ae.FreeUserSeats = -1;
}
ComputingManager.ApplicationEnvironments->push_back(ae);
}
int eeID = 0;
for (XMLNode xExecutionEnvironment = xComputingManager["ExecutionEnvironments"]["ExecutionEnvironment"]; (bool)xExecutionEnvironment; ++xExecutionEnvironment) {
ExecutionEnvironmentType ExecutionEnvironment;
if (xExecutionEnvironment["Platform"]) {
ExecutionEnvironment->Platform = (std::string)xExecutionEnvironment["Platform"];
}
if (xExecutionEnvironment["MainMemorySize"]) {
ExecutionEnvironment->MainMemorySize = stringtoi((std::string)xExecutionEnvironment["MainMemorySize"]);
}
if (xExecutionEnvironment["OSName"]) {
if (xExecutionEnvironment["OSVersion"]) {
if (xExecutionEnvironment["OSFamily"]) {
ExecutionEnvironment->OperatingSystem = Software((std::string)xExecutionEnvironment["OSFamily"],
(std::string)xExecutionEnvironment["OSName"],
(std::string)xExecutionEnvironment["OSVersion"]);
}
else {
ExecutionEnvironment->OperatingSystem = Software((std::string)xExecutionEnvironment["OSName"],
(std::string)xExecutionEnvironment["OSVersion"]);
}
}
else {
ExecutionEnvironment->OperatingSystem = Software((std::string)xExecutionEnvironment["OSName"]);
}
}
if (xExecutionEnvironment["ConnectivityIn"]) {
ExecutionEnvironment->ConnectivityIn = (lower((std::string)xExecutionEnvironment["ConnectivityIn"]) == "true");
}
if (xExecutionEnvironment["ConnectivityOut"]) {
ExecutionEnvironment->ConnectivityOut = (lower((std::string)xExecutionEnvironment["ConnectivityOut"]) == "true");
}
ComputingManager.ExecutionEnvironment.insert(std::pair<int, ExecutionEnvironmentType>(eeID++, ExecutionEnvironment));
}
cs.ComputingManager.insert(std::pair<int, ComputingManagerType>(managerID++, ComputingManager));
}
targets.push_back(cs);
}
}
