void CQSpecieDM::deleteSpecieRow(UndoSpeciesData *pSpecieData)
{
GET_MODEL_OR_RETURN(pModel);
switchToWidget(CCopasiUndoCommand::SPECIES);
CMetab * pSpecies = dynamic_cast< CMetab * >(pSpecieData->getObject(pModel));
if (pSpecies == NULL) return;
size_t Index = pModel->getMetabolites().getIndex(pSpecies);
removeRow((int) Index);
if (!pSpecieData->getCreatedCompartment()) return;
Index = pModel->getCompartments().getIndex(pSpecieData->getCompartment());
if (Index == C_INVALID_INDEX) return;
CCompartment* pComp = &pModel->getCompartments()[Index];
if (pComp == NULL) return;
std::string key = pComp->getKey();
pModel->removeCompartment(Index);
emit notifyGUI(ListViews::COMPARTMENT, ListViews::DELETE, key);
}
bool CQGlobalQuantityDM::insertGlobalQuantityRows(QList <UndoGlobalQuantityData *>& pData)
{
//reinsert all the GlobalQuantities
QList <UndoGlobalQuantityData *>::const_iterator i;
for (i = pData.begin(); i != pData.end(); ++i)
{
UndoGlobalQuantityData * data = *i;
if (mpGlobalQuantities->getIndex(data->getName()) != C_INVALID_INDEX)
continue;
beginInsertRows(QModelIndex(), 1, 1);
CModelValue *pGlobalQuantity = data->restoreObjectIn(mpDataModel->getModel());
if (pGlobalQuantity != NULL)
emit notifyGUI(ListViews::MODELVALUE, ListViews::ADD, pGlobalQuantity->getKey());
endInsertRows();
}
switchToWidget(CCopasiUndoCommand::GLOBALQUANTITYIES);
return true;
}
void WidgetStackControlListener::slotValueChanged(double v) {
if (v > 0.0) {
emit(switchToWidget());
} else {
emit(hideWidget());
}
}
void CQCompartment::deleteCompartment()
{
if (mpCompartment == NULL) return;
QMessageBox::StandardButton choice =
CQMessageBox::confirmDelete(this, "compartment",
FROM_UTF8(mpCompartment->getObjectName()),
mpCompartment->getDeletedObjects());
switch (choice)
{
case QMessageBox::Ok:
{
CModel * pModel = mpCompartment->getModel();
assert(pModel != NULL);
pModel->removeCompartment(mKey);
protectedNotify(ListViews::COMPARTMENT, ListViews::DELETE, mKey);
protectedNotify(ListViews::COMPARTMENT, ListViews::DELETE, ""); //Refresh all as there may be dependencies.
break;
}
default:
break;
}
switchToWidget(CCopasiUndoCommand::COMPARTMENTS);
}
void CQCompartment::addCompartment(UndoCompartmentData *pData)
{
//reinsert all the Compartments
CModel * pModel = mpCompartment->getModel();
assert(pModel != NULL);
pData->restoreObjectIn(pModel);
protectedNotify(ListViews::COMPARTMENT, ListViews::ADD, pData->getKey());
switchToWidget(C_INVALID_INDEX, pData->getKey());
}
void CQGlobalQuantityDM::deleteGlobalQuantityRow(UndoGlobalQuantityData *pGlobalQuantityData)
{
switchToWidget(CCopasiUndoCommand::GLOBALQUANTITYIES);
size_t index = mpGlobalQuantities->getIndex(pGlobalQuantityData->getName());
if (index == C_INVALID_INDEX)
return;
removeRow((int) index);
}
void CQGlobalQuantityDM::addGlobalQuantityRow(UndoGlobalQuantityData *pGlobalQuantityData)
{
switchToWidget(CCopasiUndoCommand::GLOBALQUANTITYIES);
beginInsertRows(QModelIndex(), 1, 1);
CModelValue *pGlobalQuantity = pGlobalQuantityData->restoreObjectIn(mpDataModel->getModel());
if (pGlobalQuantity != NULL)
emit notifyGUI(ListViews::MODELVALUE, ListViews::ADD, pGlobalQuantity->getKey());
endInsertRows();
}
void CQGlobalQuantityDM::deleteGlobalQuantityRows(QList <UndoGlobalQuantityData *>& pData)
{
switchToWidget(CCopasiUndoCommand::GLOBALQUANTITYIES);
QList <UndoGlobalQuantityData *>::const_iterator j;
for (j = pData.begin(); j != pData.end(); ++j)
{
UndoGlobalQuantityData * data = *j;
size_t index = mpGlobalQuantities->getIndex(data->getName());
removeRow((int) index);
}
}
void WWidgetStack::addWidgetWithControl(QWidget* pWidget, ControlObject* pControl) {
int index = addWidget(pWidget);
if (pControl) {
WidgetStackControlListener* pListener = new WidgetStackControlListener(
this, pControl, index);
connect(pListener, SIGNAL(switchToWidget()),
&m_mapper, SLOT(map()));
connect(this, SIGNAL(currentChanged(int)),
pListener, SLOT(onCurrentWidgetChanged(int)));
m_mapper.setMapping(pListener, index);
pListener->onCurrentWidgetChanged(currentIndex());
}
}
void CQSpecieDM::addSpecieRow(UndoSpeciesData *pSpecieData)
{
GET_MODEL_OR_RETURN(pModel);
switchToWidget(CCopasiUndoCommand::SPECIES);
CMetab *species = pSpecieData->restoreObjectIn(pModel);
if (species == NULL)
return;
beginInsertRows(QModelIndex(), 1, 1);
emit notifyGUI(ListViews::METABOLITE, ListViews::ADD, species->getKey());
endInsertRows();
}
void CQSpeciesDetail::deleteSpecies(UndoSpeciesData *pSData)
{
GET_MODEL_OR_RETURN(pModel);
switchToWidget(CCopasiUndoCommand::SPECIES);
CMetab * pSpecies = dynamic_cast< CMetab * >(pSData->getObject(pModel));
if (pSpecies == NULL) return;
std::string key = pSpecies->getKey();
pModel->removeMetabolite(key);
#undef DELETE
protectedNotify(ListViews::METABOLITE, ListViews::DELETE, key); //mKey);
protectedNotify(ListViews::METABOLITE, ListViews::DELETE, "");//Refresh all as there may be dependencies.
}
bool CQGlobalQuantityDM::globalQuantityDataChange(const QModelIndex &index, const QVariant &value, int role)
{
assert((size_t)index.row() < mpGlobalQuantities->size());
if (!index.isValid() || role != Qt::EditRole)
return false;
bool defaultRow = isDefaultRow(index);
if (defaultRow)
{
if (index.column() == COL_TYPE_GQ)
{
if (index.data().toString() != QString(FROM_UTF8(CModelEntity::StatusName[mItemToType[value.toInt()]])))
insertRow(rowCount(), index);
else
return false;
}
else if (index.data() != value)
insertRow(rowCount(), index);
else
return false;
}
switchToWidget(CCopasiUndoCommand::GLOBALQUANTITYIES);
CModelValue & GQ = mpGlobalQuantities->operator [](index.row());
if (index.column() == COL_NAME_GQ)
GQ.setObjectName(TO_UTF8(value.toString()));
else if (index.column() == COL_TYPE_GQ)
GQ.setStatus((CModelEntity::Status) mItemToType[value.toInt()]);
else if (index.column() == COL_INITIAL_GQ)
GQ.setInitialValue(value.toDouble());
if (defaultRow && this->index(index.row(), COL_NAME_GQ).data().toString() == "quantity")
GQ.setObjectName(TO_UTF8(createNewName("quantity", COL_NAME_GQ)));
emit dataChanged(index, index);
emit notifyGUI(ListViews::MODELVALUE, ListViews::CHANGE, GQ.getKey());
return true;
}
void CQCompartment::deleteCompartment(UndoCompartmentData *pCompartmentData)
{
switchToWidget(CCopasiUndoCommand::COMPARTMENTS);
CModel * pModel = mpCompartment->getModel();
assert(pModel != NULL);
CCompartment* pComp = &pModel->getCompartments()[pCompartmentData->getName()];
if (pComp == NULL) return;
std::string key = pComp->getKey();
pModel->removeCompartment(key);
mpCompartment = NULL;
#undef DELETE
protectedNotify(ListViews::COMPARTMENT, ListViews::DELETE, key);
protectedNotify(ListViews::COMPARTMENT, ListViews::DELETE, "");//Refresh all as there may be dependencies.
}
bool CQSpecieDM::removeSpecieRows(QModelIndexList rows, const QModelIndex&)
{
if (rows.isEmpty())
return false;
GET_MODEL_OR(pModel, return false);
switchToWidget(CCopasiUndoCommand::SPECIES);
//Build the list of pointers to items to be deleted
//before actually deleting any item.
QList <CMetab *> pSpecies;
QModelIndexList::const_iterator i;
for (i = rows.begin(); i != rows.end(); ++i)
{
if (!isDefaultRow(*i) && &pModel->getMetabolites()[i->row()])
pSpecies.append(&pModel->getMetabolites()[i->row()]);
}
QList <CMetab *>::const_iterator j;
for (j = pSpecies.begin(); j != pSpecies.end(); ++j)
{
CMetab * pSpecie = *j;
size_t delRow =
pModel->getMetabolites().CCopasiVector< CMetab >::getIndex(pSpecie);
if (delRow == C_INVALID_INDEX)
continue;
QMessageBox::StandardButton choice =
CQMessageBox::confirmDelete(NULL, "species",
FROM_UTF8(pSpecie->getObjectName()),
pSpecie->getDeletedObjects());
if (choice == QMessageBox::Ok)
removeRow((int) delRow);
}
return true;
}
bool CQGlobalQuantityDM::removeGlobalQuantityRows(QModelIndexList rows, const QModelIndex&)
{
if (rows.isEmpty())
return false;
switchToWidget(CCopasiUndoCommand::GLOBALQUANTITYIES);
//Build the list of pointers to items to be deleted
//before actually deleting any item.
QList <CModelValue *> pGlobalQuantities;
QModelIndexList::const_iterator i;
for (i = rows.begin(); i != rows.end(); ++i)
{
if (!isDefaultRow(*i) && &mpGlobalQuantities->operator [](i->row()))
pGlobalQuantities.append(&mpGlobalQuantities->operator [](i->row()));
}
QList <CModelValue *>::const_iterator j;
for (j = pGlobalQuantities.begin(); j != pGlobalQuantities.end(); ++j)
{
CModelValue * pGQ = *j;
size_t delRow =
mpGlobalQuantities->CCopasiVector< CModelValue >::getIndex(pGQ);
if (delRow == C_INVALID_INDEX)
continue;
QMessageBox::StandardButton choice =
CQMessageBox::confirmDelete(NULL, "quantity",
FROM_UTF8(pGQ->getObjectName()),
pGQ->getDeletedObjects());
if (choice == QMessageBox::Ok)
removeRow((int) delRow);
}
return true;
}
void WWidgetStack::addWidgetWithControl(QWidget* pWidget, ControlObject* pControl) {
int index = addWidget(pWidget);
if (pControl) {
WidgetStackControlListener* pListener = new WidgetStackControlListener(
this, pControl, index);
m_showMapper.setMapping(pListener, index);
m_hideMapper.setMapping(pListener, index);
if (pControl->get() > 0) {
setCurrentIndex(count()-1);
}
pListener->onCurrentWidgetChanged(currentIndex());
connect(pListener, SIGNAL(switchToWidget()),
&m_showMapper, SLOT(map()));
connect(pListener, SIGNAL(hideWidget()),
&m_hideMapper, SLOT(map()));
connect(this, SIGNAL(currentChanged(int)),
pListener, SLOT(onCurrentWidgetChanged(int)));
}
if (m_currentPageControl.get() == index) {
setCurrentIndex(index);
}
}
bool CQCompartment::changeValue(const std::string& key,
CCopasiUndoCommand::Type type,
const QVariant& newValue,
double iValue,
UndoCompartmentData* pUndoData)
{
if (!mIgnoreUpdates)
{
mKey = key;
mpObject = CCopasiRootContainer::getKeyFactory()->get(key);
mpCompartment = dynamic_cast<CCompartment*>(mpObject);
load();
switchToWidget(C_INVALID_INDEX, mKey);
}
switch (type)
{
case CCopasiUndoCommand::COMPARTMENT_EXPRESSION_CHANGE:
mpCompartment->setExpression(TO_UTF8(newValue.toString()));
break;
case CCopasiUndoCommand::COMPARTMENT_INITIAL_EXPRESSION_CHANGE:
mpCompartment->setInitialExpression(TO_UTF8(newValue.toString()));
if (newValue.toString().isEmpty())
{
mpCompartment->setInitialValue(iValue);
}
break;
case CCopasiUndoCommand::COMPARTMENT_INITIAL_VOLUME_CHANGE:
mpCompartment->setInitialValue(newValue.toDouble());
if (pUndoData != NULL)
{
CModel * pModel = mpCompartment->getModel();
assert(pModel != NULL);
pUndoData->fillDependentObjects(pModel);
}
break;
case CCopasiUndoCommand::COMPARTMENT_SIMULATION_TYPE_CHANGE:
mpCompartment->setStatus((CModelEntity::Status)newValue.toInt());
break;
case CCopasiUndoCommand::COMPARTMENT_SPATIAL_DIMENSION_CHANGE:
mpCompartment->setDimensionality(newValue.toInt());
break;
case CCopasiUndoCommand::COMPARTMENT_ADD_NOISE_CHANGE:
mpCompartment->setAddNoise(newValue.toBool());
break;
case CCopasiUndoCommand::COMPARTMENT_NOISE_EXPRESSION_CHANGE:
mpCompartment->setNoiseExpression(TO_UTF8(newValue.toString()));
break;
default:
return false;
}
if (mIgnoreUpdates) return true;
assert(mpDataModel != NULL);
mpDataModel->changed();
protectedNotify(ListViews::COMPARTMENT, ListViews::CHANGE, mKey);
load();
return true;
}
bool CQSpecieDM::specieDataChange(
UndoSpeciesData *pUndoSpeciesData,
const QVariant &value,
int column)
{
switchToWidget(CCopasiUndoCommand::SPECIES);
GET_MODEL_OR(pModel, return false);
mpSpecies =
dynamic_cast<CMetab*>(pUndoSpeciesData->getObject(pModel));
if (mpSpecies == NULL)
return false;
const CCompartment * pCompartment = NULL;
if (column == COL_COMPARTMENT ||
column == COL_ICONCENTRATION ||
column == COL_INUMBER)
{
try
{
pCompartment = mpSpecies->getCompartment();
}
catch (...) {}
}
if (column == COL_NAME_SPECIES)
{
mpSpecies->setObjectName(TO_UTF8(value.toString()));
pUndoSpeciesData->setCN(mpSpecies->getCN());
}
else if (column == COL_COMPARTMENT)
{
// This must be set first for setInitialConcentration and
// setInitialNumber to work correctly.
std::string Compartment(TO_UTF8(value.toString()));
if (Compartment != pCompartment->getObjectName())
{
std::string CompartmentToRemove = mpSpecies->getCompartment()->getObjectName();
if (!(pModel->getCompartments()[Compartment].addMetabolite(mpSpecies)))
{
QString msg;
msg = "Unable to move species '" + FROM_UTF8(mpSpecies->getObjectName()) + "'\n"
+ "from compartment '" + FROM_UTF8(CompartmentToRemove) + "' to compartment '" + FROM_UTF8(Compartment) + "'\n"
+ "since a species with that name already exist in the target compartment.";
CQMessageBox::information(NULL,
"Unable to move Species",
msg,
QMessageBox::Ok, QMessageBox::Ok);
return false;
}
else
{
pModel->getCompartments()[CompartmentToRemove].getMetabolites().remove(mpSpecies->getObjectName());
pModel->setCompileFlag();
pModel->initializeMetabolites();
if (mpSpecies && pCompartment)
{
C_FLOAT64 Factor = 1.0 / pCompartment->getInitialValue();
Factor *= pCompartment->getInitialValue();
mpSpecies->setInitialValue(Factor * pUndoSpeciesData->getINumber());
mpSpecies->setValue(Factor * mpSpecies->getValue());
}
emit notifyGUI(ListViews::METABOLITE, ListViews::CHANGE, mpSpecies->getKey());
emit notifyGUI(ListViews::COMPARTMENT, ListViews::CHANGE, pCompartment->getKey());
}
}
}
else if (column == COL_TYPE_SPECIES)
mpSpecies->setStatus((CModelEntity::Status) mItemToType[value.toInt()]);
else if (column == COL_ICONCENTRATION)
{
if (mFlagConc)
mpSpecies->setInitialConcentration(value.toDouble());
if (mpSpecies && pCompartment)
{
const C_FLOAT64 initialValue =
CMetab::convertToNumber(pUndoSpeciesData->getIConc(),
*pCompartment,
*pModel);
mpSpecies->setInitialValue(initialValue);
}
}
else if (column == COL_INUMBER)
{
if (!mFlagConc)
mpSpecies->setInitialValue(value.toDouble());
if (mpSpecies && pCompartment)
{
mpSpecies->setInitialConcentration(
CMetab::convertToConcentration(pUndoSpeciesData->getINumber(),
*pCompartment,
*pModel)
);
}
}
//Save Key
std::string key = mpSpecies->getKey();
// ask for refresh this may change the key!
QModelIndex index = getIndexFor(mpSpecies, column);
emit dataChanged(index, index);
if (column == COL_NAME_SPECIES)
{
emit notifyGUI(ListViews::METABOLITE, ListViews::RENAME, key);
}
else
{
emit notifyGUI(ListViews::METABOLITE, ListViews::CHANGE, key);
}
return true;
}