void Residue::addAtom(unsigned long id)
{
if (!m_molecule->atomById(id))
return;
if (!m_atoms.contains(id))
m_atoms.push_back(id);
m_molecule->atomById(id)->setResidue(m_id);
connect(m_molecule->atomById(id), SIGNAL(updated()), this, SLOT(updateAtom()));
}
void Residue::removeAtom(unsigned long id)
{
int index = m_atoms.indexOf(id);
if (index != -1 ) {
m_atoms.removeAt(index);
}
if (!m_molecule->atomById(id))
return;
m_molecule->atomById(id)->setResidue(FALSE_ID);
disconnect(m_molecule->atomById(id), SIGNAL(updated()), this, SLOT(updateAtom()));
}
void Molecule::removeAtom(Atom *atom)
{
if(atom) {
// When deleting an atom this also implicitly deletes any bonds to the atom
foreach (unsigned long bond, atom->bonds()) {
removeBond(bond);
}
m_atoms[atom->id()] = 0;
// 1 based arrays stored/shown to user
int index = atom->index();
m_atomList.removeAt(index);
for (int i = index; i < m_atomList.size(); ++i)
m_atomList[i]->setIndex(i);
atom->deleteLater();
disconnect(atom, SIGNAL(updated()), this, SLOT(updateAtom()));
emit atomRemoved(atom);
}
}
void Dialog2::applied()
{
updateAtom();
canvas->updateGL();
}
