PRIVATE void heat_capacity(char *string, float T_min, float T_max,
float h, int m)
{
int length, i;
char *structure;
float hc, kT, min_en;
length = (int) strlen(string);
do_backtrack = 0;
temperature = T_min -m*h;
/* initialize_fold(length); <- obsolete */
structure = (char *) space((unsigned) length+1);
min_en = fold(string, structure);
free(structure); free_arrays();
kT = (temperature+K0)*GASCONST/1000; /* in kcal */
pf_scale = exp(-(1.07*min_en)/kT/length );
/* init_pf_fold(length); <- obsolete */
pf_paramT *pf_parameters = NULL;
model_detailsT md;
set_model_details(&md);
for (i=0; i<2*m+1; i++) {
if(pf_parameters) free(pf_parameters);
pf_parameters = get_boltzmann_factors(temperature, 1.0, md, pf_scale);
F[i] = pf_fold_par(string, NULL, pf_parameters, 0, 0, 0); /* T_min -2h */
temperature += h;
kT = (temperature+K0)*GASCONST/1000;
pf_scale=exp(-(F[i]/length +h*0.00727)/kT); /* try to extrapolate F */
update_pf_params(length);
}
while (temperature <= (T_max+m*h+h)) {
hc = - ddiff(F,h,m)* (temperature +K0 - m*h -h);
printf("%g %g\n", (temperature-m*h-h), hc);
for (i=0; i<2*m; i++)
F[i] = F[i+1];
F[2*m] = pf_fold_par(string, NULL, pf_parameters, 0, 0, 0);
/* printf("%g\n", F[2*m]);*/
temperature += h;
kT = (temperature+K0)*GASCONST/1000;
pf_scale=exp(-(F[i]/length +h*0.00727)/kT);
if(pf_parameters) free(pf_parameters);
pf_parameters = get_boltzmann_factors(temperature, 1.0, md, pf_scale);
update_pf_params(length);
}
free_pf_arrays();
}
PRIVATE void heat_capacity(char *string, float T_min, float T_max,
float h, int m)
{
int length, i;
char *structure;
float hc, kT, min_en;
length = (int) strlen(string);
do_backtrack = 0;
temperature = T_min -m*h;
initialize_fold(length);
structure = (char *) space((unsigned) length+1);
min_en = fold(string, structure);
free(structure); free_arrays();
kT = (temperature+K0)*GASCONST/1000; /* in kcal */
pf_scale = exp(-(1.07*min_en)/kT/length );
init_pf_fold(length);
for (i=0; i<2*m+1; i++) {
F[i] = pf_fold(string, NULL); /* T_min -2h */
temperature += h;
kT = (temperature+K0)*GASCONST/1000;
pf_scale=exp(-(F[i]/length +h*0.00727)/kT); /* try to extrapolate F */
update_pf_params(length);
}
while (temperature <= (T_max+m*h+h)) {
hc = - ddiff(F,h,m)* (temperature +K0 - m*h -h);
printf("%g %g\n", (temperature-m*h-h), hc);
for (i=0; i<2*m; i++)
F[i] = F[i+1];
F[2*m] = pf_fold(string, NULL);
temperature += h;
kT = (temperature+K0)*GASCONST/1000;
pf_scale=exp(-(F[i]/length +h*0.00727)/kT);
update_pf_params(length);
}
free_pf_arrays();
}
