/*
* --> a = (*p)
*--> b = *a
*--> c = b-- = x
* */
uint32_t cfir(int M, uint32_t* h, uint32_t* w, uint32_t** p, uint32_t x) {
int i = 0;
uint32_t y;
*(*p)-- = x; // gan gia tri roi tru dia chi di 1
wrap_(M, w, p);
for (y = 0, h += M; i >= 0; i--) {
y += (*h--) * (*(*(p))--); // gan gia tri roi tru dia chi di 1
wrap_(M, w, p);
}
return y;
}
/// Get the next command entry
std::string CommandHolder::GetNext(){
if(total == 0){ return "NULL"; }
if(external_index >= 1){
external_index--;
}
if(external_index == 0){ return fragment; }
return commands[wrap_()];
}
/// Get the previous command entry
std::string CommandHolder::GetPrev(){
if(total == 0){ return "NULL"; }
external_index++;
if(external_index >= max_size){
external_index = max_size - 1;
}
else if(external_index >= total){
external_index = total;
}
return commands[wrap_()];
}
String XQuestResultXMLFile::getxQuestBase64EncodedSpectrum_(const PeakSpectrum& spec, String header)
{
std::vector<String> in_strings;
StringList sl;
double precursor_mz = 0;
double precursor_z = 0;
if (spec.getPrecursors().size() > 0)
{
precursor_mz = Math::roundDecimal(spec.getPrecursors()[0].getMZ(), -9);
precursor_z = spec.getPrecursors()[0].getCharge();
}
// header lines
if (!header.empty()) // common or xlinker spectrum will be reported
{
sl.push_back(header + "\n"); // e.g. GUA1372-S14-A-LRRK2_DSS_1A3.03873.03873.3.dta,GUA1372-S14-A-LRRK2_DSS_1A3.03863.03863.3.dta
sl.push_back(String(precursor_mz) + "\n");
sl.push_back(String(precursor_z) + "\n");
}
else // light or heavy spectrum will be reported
{
sl.push_back(String(precursor_mz) + "\t" + String(precursor_z) + "\n");
}
PeakSpectrum::IntegerDataArray charges;
if (spec.getIntegerDataArrays().size() > 0)
{
charges = spec.getIntegerDataArrays()[0];
}
// write peaks
for (Size i = 0; i != spec.size(); ++i)
{
String s;
s += String(Math::roundDecimal(spec[i].getMZ(), -9)) + "\t";
s += String(spec[i].getIntensity()) + "\t";
if (charges.size() > 0)
{
s += String(charges[i]);
}
else
{
s += "0";
}
s += "\n";
sl.push_back(s);
}
String out;
out.concatenate(sl.begin(), sl.end(), "");
in_strings.push_back(out);
String out_encoded;
Base64().encodeStrings(in_strings, out_encoded, false, false);
String out_wrapped;
wrap_(out_encoded, 76, out_wrapped);
return out_wrapped;
}
