void RunLinkToMCAnalysisExample(const char* esdFile = "./AliESDs.root")
{
// Load needed libraries
gSystem->Load("libTree");
gSystem->Load("libGeom");
gSystem->Load("libVMC");
gSystem->Load("libPhysics");
gSystem->Load("libSTEERBase");
gSystem->Load("libESD");
gSystem->Load("libAOD");
gSystem->Load("libANALYSIS");
gSystem->Load("libANALYSISalice");
gSystem->Load("libPWGHFbase");
gSystem->Load("libPWGmuon");
// Create the TChain for esdTrees in the AliESDs.root file.
TChain* chain = new TChain("esdTree");
chain->Add(esdFile);
if (!chain) return;
// Create the analysis manager and event handlers.
AliAnalysisManager* mgr = new AliAnalysisManager("Analysis Train", "An example analysis train setup for AliAnalysisTaskLinkToMC.");
AliESDInputHandler* esdHandler = new AliESDInputHandler();
mgr->SetInputEventHandler(esdHandler);
AliMCEventHandler* mcHandler = new AliMCEventHandler();
mgr->SetMCtruthEventHandler(mcHandler);
mcHandler->SetReadTR(kTRUE);
AliAODHandler* aodHandler = new AliAODHandler();
mgr->SetOutputEventHandler(aodHandler);
aodHandler->SetOutputFileName("AliAOD.root");
// Create the analysis task and setup the parameters.
AliAnalysisTaskLinkToMC* linktask = new AliAnalysisTaskLinkToMC("Task to link ESD tracks to corresponding MC tracks.");
linktask->MinClusters(6);
linktask->HardCutLimitX(4);
linktask->HardCutLimitY(4);
linktask->SigmaCut(5.);
linktask->MinClustersInSt45(3);
linktask->StationMustMatch(1, true); // At least one cluster in station 1 must match.
linktask->StationMustMatch(2, true); // At least one cluster in station 2 must match.
linktask->StationMustMatch(3, true); // At least one cluster in station 3 must match.
linktask->GenerateHistograms(true);
mgr->AddTask(linktask);
// Create the input and output containers and connect them up to the analysis task.
AliAnalysisDataContainer* cinEsd = mgr->GetCommonInputContainer();
AliAnalysisDataContainer* coutAod = mgr->GetCommonOutputContainer();
AliAnalysisDataContainer* coutHists = mgr->CreateContainer("cHists", TList::Class(), AliAnalysisManager::kOutputContainer, "hists.root");
mgr->ConnectInput(linktask, 0, cinEsd);
mgr->ConnectOutput(linktask, 0, coutAod);
mgr->ConnectOutput(linktask, 1, coutHists);
if (mgr->InitAnalysis())
{
mgr->PrintStatus();
mgr->StartAnalysis("local", chain);
}
}
AliAnalysisTask* AddTaskAOD2AODMuonOnly(const char* triggerinputs,Bool_t withSPDtracklets, Int_t mcMode)
{
AliAnalysisManager* mgr = AliAnalysisManager::GetAnalysisManager();
if (!mgr)
{
::Error("AddTaskAOD2AODMuonOnly", "No analysis manager to connect to.");
return 0x0;
}
AliInputEventHandler* input = mgr->GetInputEventHandler();
if (!input)
{
::Error("AddTaskAOD2AODMuonOnly", "This task requires an input event handler");
return 0x0;
}
TString inputDataType = input->GetDataType(); // can be "ESD" or "AOD"
if (inputDataType != "AOD")
{
::Error("AddTaskAOD2AODMuonOnly", "This task requires an AOD input event handler");
return 0x0;
}
AliAODHandler* aodHandler = dynamic_cast<AliAODHandler*>(mgr->GetOutputEventHandler());
if (!aodHandler)
{
::Error("AddTaskAOD2AODMuonOnly", "This task requires an AOD output event handler");
return 0x0;
}
aodHandler->SetCreateNonStandardAOD();
AliMuonEventCuts* eventCuts = new AliMuonEventCuts("L0cutter","");
eventCuts->SetTrigClassPatterns("0MSL|0MUL|0MSH|0MLL",triggerinputs);
AliAnalysisTask* task = new AliAnalysisTaskAOD2MuonAOD(mcMode,withSPDtracklets,eventCuts);
mgr->AddTask(task);
// Connect input/output
mgr->ConnectInput(task, 0, mgr->GetCommonInputContainer());
mgr->ConnectOutput(task, 0, mgr->GetCommonOutputContainer());
return task;
}
Bool_t CreateInputHandlers(TString input,TString inputMC,Bool_t useAODOut=kFALSE,Bool_t useMultiHandler=kTRUE) {
input.ToLower();
inputMC.ToLower();
Bool_t useMC = !inputMC.CompareTo("mc");
AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
if (!mgr) { Printf("Error [CreateInputHandlers] : mgr is null !!!"); return kFALSE; }
if (useMultiHandler) {
AliMultiInputEventHandler *inputHandler = new AliMultiInputEventHandler();
if (!input.CompareTo("esd")) {
Printf("Adding ESD Input Handler ...");
inputHandler->AddInputEventHandler(new AliESDInputHandler());
if (useMC) inputHandler->AddInputEventHandler(new AliMCEventHandler());
} else if (!input.CompareTo("aod")) {
inputHandler->AddInputEventHandler(new AliAODInputHandler());
}
mgr->SetInputEventHandler(inputHandler);
} else {
if (!input.CompareTo("esd")) {
mgr->SetInputEventHandler(new AliESDInputHandler());
if (useMC) mgr->SetMCtruthEventHandler(new AliMCEventHandler());
} else if (!input.CompareTo("aod")) {
mgr->SetInputEventHandler(new AliAODInputHandler());
}
}
if (useAODOut) {
AliAODHandler *aodHandler = new AliAODHandler();
aodHandler->SetOutputFileName("AliAOD.root");
mgr->SetOutputEventHandler(aodHandler);
}
return kTRUE;
}
void TaskBuzzer(UInt_t config, const char *collection="wn.xml")
{
printf("Running buzzer with: %s\n", ConfigName(config));
TGrid::Connect("alien://");
if (!gGrid || !gGrid->IsConnected()) {
::Error("PilotAnalysis", "No grid connection");
return;
}
TChain *chain = CreateChain(collection, "ESD");
// Load libraries
gSystem->SetIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT/include -I$ALICE_ROOT -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TRD");
LoadLibraries();
// Create manager
AliAnalysisManager *mgr = new AliAnalysisManager("ESDfiltering", "Production train");
mgr->SetNSysInfo(100);
// Input handler
AliESDInputHandlerRP *esdHandler = new AliESDInputHandlerRP();
// AliESDInputHandler *esdHandler = new AliESDInputHandler();
esdHandler->SetReadFriends(kTRUE);
esdHandler->SetActiveBranches("ESDfriend");
mgr->SetInputEventHandler(esdHandler);
if (config & kAOD) {
// AOD output handler
AliAODHandler* aodHandler = new AliAODHandler();
aodHandler->SetOutputFileName("AliAOD.root");
if (!mergeExcludes.IsNull()) mergeExcludes += " ";
mergeExcludes += "AliAOD.root";
mgr->SetOutputEventHandler(aodHandler);
}
// AnalysisTasks
AddAnalysisTasks(config);
mgr->SetDebugLevel(1);
if (mgr->InitAnalysis()) {
mgr->PrintStatus();
mgr->StartAnalysis("local", chain);
}
}
//______________________________________________________________________________
void AODtrainsim(Int_t merge=0)
{
// Main analysis train macro.
// merge = 0: production
// merge = 1: intermediate merging
// merge = 2: final merging + terminate
// merge = 3: terminate only
if (merge) {
TGrid::Connect("alien://");
if (!gGrid || !gGrid->IsConnected()) {
::Error("AODtrainsim.C", "No grid connection");
return;
}
}
// Set temporary merging directory to current one
gSystem->Setenv("TMPDIR", gSystem->pwd());
// Set temporary compilation directory to current one
gSystem->SetBuildDir(gSystem->pwd(), kTRUE);
printf("==================================================================\n");
printf("=========== RUNNING FILTERING TRAIN ==========\n");
printf("==================================================================\n");
printf("= Configuring analysis train for: =\n");
if (usePhysicsSelection) printf("= Physics selection =\n");
if (iESDfilter) printf("= ESD filter =\n");
if (iMUONcopyAOD) printf("= MUON copy AOD =\n");
// Load common libraries and set include path
gSystem->AddIncludePath("-I$ALICE_ROOT/include -I$ALICE_PHYSICS/include");
// Make the analysis manager and connect event handlers
AliAnalysisManager *mgr = new AliAnalysisManager("Analysis Train", "Production train");
if (useSysInfo) mgr->SetNSysInfo(100);
// Load ParFiles
if (!LoadAnalysisLibraries()) {
::Error("AODtrainsim.C", "Could not load analysis libraries");
return;
}
// Create input handler (input container created automatically)
// ESD input handler
AliESDInputHandler *esdHandler = new AliESDInputHandler();
mgr->SetInputEventHandler(esdHandler);
// Monte Carlo handler
if (useMC) {
AliMCEventHandler* mcHandler = new AliMCEventHandler();
mgr->SetMCtruthEventHandler(mcHandler);
mcHandler->SetReadTR(useTR);
}
// AOD output container, created automatically when setting an AOD handler
if (iAODhandler) {
// AOD output handler
AliAODHandler* aodHandler = new AliAODHandler();
aodHandler->SetOutputFileName("AliAOD.root");
mgr->SetOutputEventHandler(aodHandler);
}
// Debugging if needed
if (useDBG) mgr->SetDebugLevel(3);
AddAnalysisTasks(merge);
if (merge) {
if (merge < 3) AODmerge();
if (merge > 1) {
mgr->InitAnalysis();
mgr->SetGridHandler(new AliAnalysisAlien());
mgr->StartAnalysis("grid terminate",0);
}
return;
}
// Run the analysis
//
TChain *chain = CreateChain();
if (!chain) return;
TStopwatch timer;
timer.Start();
mgr->SetSkipTerminate(kTRUE);
if (mgr->InitAnalysis()) {
mgr->PrintStatus();
mgr->StartAnalysis("local", chain);
}
timer.Print();
}
Bool_t AddTasksEmcalFjetSparseMaker()
{
AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
if (bIsInfoAOD) {
gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/train/AddAODHandler.C");
AliAODInputHandler *aodIH = AddAODHandler();
} else {
gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/train/AddESDHandler.C");
AliESDInputHandler *esdIH = AddESDHandler();
// esdIH->SetReadFriends(kFALSE);
}
if (bAnaInfoMC && (!bIsInfoAOD)) {
gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/train/AddMCHandler.C");
AliMCEventHandler *mctEH = AddMCHandler(kTRUE);
}
if (bOutputAOD) {
gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/train/AddAODOutputHandler.C");
AliAODHandler *aodH = AddAODOutputHandler();
aodH->SetOutputFileName("AliAOD.PicoJets.root");
aodH->SetFillAOD(kTRUE);
aodH->SetCreateNonStandardAOD();
mgr->SetOutputEventHandler(aodH);
}
//=============================================================================
if (bIsPhysSel) {
gROOT->LoadMacro("$ALICE_PHYSICS/PWG/EMCAL/macros/AddTaskEmcalPhysicsSelection.C");
AliEmcalPhysicsSelectionTask *taksPhysSel = AddTaskEmcalPhysicsSelection(kTRUE, kTRUE, wTriggerMask, 5., 5., 10., kTRUE, -1, -1, -1, -1);
if (bAnaInfoMC) {
AliEmcalPhysicsSelection *pPhysSel = static_cast<AliEmcalPhysicsSelection*>(taksPhysSel->GetPhysicsSelection());
if (!pPhysSel) return kTRUE; pPhysSel->SetAnalyzeMC();
}
}
if (bIsCentSel) {
gROOT->LoadMacro("$ALICE_PHYSICS/OADB/macros/AddTaskCentrality.C");
AliCentralitySelectionTask *taskCentSel = AddTaskCentrality(kTRUE, bIsAOD);
if (bAnaInfoMC) taskCentSel->SetMCInput();
}
if (bIsEvPnSel) {
gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskEventplane.C");
AliEPSelectionTask *taskEventPlane = AddTaskEventplane();
if (bAnaInfoMC) taskEventPlane->SetUseMCRP();
}
if (bIsRespPID) {
gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPIDResponse.C");
AliAnalysisTaskSE *taskRespPID = AddTaskPIDResponse(bAnaInfoMC);
}
//=============================================================================
gROOT->LoadMacro("$ALICE_PHYSICS/PWG/EMCAL/macros/AddTaskEmcalSetup.C");
AliEmcalSetupTask *taskSetupEMCal = AddTaskEmcalSetup();
taskSetupEMCal->SetGeoPath("$ALICE_PHYSICS/OADB/EMCAL");
gROOT->LoadMacro("$ALICE_PHYSICS/PWG/EMCAL/macros/AddTaskEmcalPreparation.C");
AliAnalysisTaskSE *taskEmcMaker = AddTaskEmcalPreparation(sPeriodIn);
gROOT->LoadMacro("$ALICE_PHYSICS/PWGJE/EMCALJetTasks/macros/AddTaskJetPreparation.C");
AliAnalysisTaskSE *taskHadCorr = AddTaskJetPreparation(sPeriodIn.Data(),
sUsedTrksRD.Data(),
(bAnaInfoMC ? sUsedTrksMC.Data() : ""),
sInputClsRD.Data(),
sUsedClusRD.Data(),
2., 0., 0.03, 0.015, 0.15,
wTriggerMask,
kTRUE, // do trk clus
kTRUE, // histos
kTRUE, // make pico trk
kFALSE, // make trigger
kFALSE, // is EMCal train
1., // track eff
kTRUE, // do AOD track prop
kTRUE, // modify match
kFALSE, // use old bit
kFALSE, // trigger QA
4); // cent bin
//=============================================================================
gROOT->LoadMacro("$ALICE_PHYSICS/PWGJE/EMCALJetTasks/macros/AddTaskEmcalJet.C");
/*AliEmcalJetTask *taskAkt = AddTaskEmcalJet(sUsedTrksRD.Data(),
sUsedClusRD.Data(),
1, // anti-kT
dJetRadius,
nJetType,
dTrkPtCut,
dCluEnCut);*/
//=============================================================================
AliAnalysisTaskEmcalFjetSparseMaker *taskEmcalSM = new AliAnalysisTaskEmcalFjetSparseMaker("AliAnalysisTaskEmcalFjetSM");
//taskEmcalSM->SetForceBeamType(0);
//taskEmcalSM->SetIsPythia(kTRUE);
/*taskEmcalSM->SetCaloTriggerPatchInfoName("EmcalTriggers");
taskEmcalSM->SetTriggerTypeSel(AliAnalysisTaskEmcal::kJ2);
taskEmcalSM->SetMainPatchType(AliAnalysisTaskEmcal::kTriggerLevel1Jet);*/
AliParticleContainer *pContTrks = taskEmcalSM->AddParticleContainer(sUsedTrksRD.Data());
pContTrks->SetParticlePtCut(dTrkPtCut);
AliClusterContainer *pContClus = taskEmcalSM->AddClusterContainer(sUsedClusRD.Data());
pContClus->SetClusPtCut(dCluEnCut);
/*AliJetContainer *pContJets = taskEmcalSM->AddJetContainer(taskAkt->GetName(), sCutType.Data(), dJetRadius);
pContJets->SetPercAreaCut(dJetAreaCut);
pContJets->SetJetPtCut(dJetPtCut);
//pContJets->SetRhoName(sUsedRho.Data());
//pContJets->SetLocalRhoName();
pContJets->SetLeadingHadronType(nLeading);
pContJets->ConnectParticleContainer(taskEmcalSM->GetParticleContainer());
pContJets->ConnectClusterContainer(taskEmcalSM->GetClusterContainer());
pContJets->SetNameTitle(taskEmcalSM->GetNameJet().Data(),
taskEmcalSM->GetNameJet().Data());*/
mgr->AddTask(taskEmcalSM);
mgr->ConnectInput(taskEmcalSM, 0, mgr->GetCommonInputContainer());
mgr->ConnectOutput(taskEmcalSM, 1, mgr->CreateContainer("listGeneralH",
TList::Class(),
AliAnalysisManager::kOutputContainer,
AliAnalysisManager::GetCommonFileName()));
mgr->ConnectOutput(taskEmcalSM, 2, mgr->CreateContainer("listEmcalEvH",
TList::Class(),
AliAnalysisManager::kOutputContainer,
"AnalysisResults_EmcalEvH.root"));
mgr->ConnectOutput(taskEmcalSM, 3, mgr->CreateContainer("listEmcalTrk",
TList::Class(),
AliAnalysisManager::kOutputContainer,
"AnalysisResults_EmcalTrk.root"));
mgr->ConnectOutput(taskEmcalSM, 4, mgr->CreateContainer("listEmcalClu",
TList::Class(),
AliAnalysisManager::kOutputContainer,
"AnalysisResults_EmcalClu.root"));
/*mgr->ConnectOutput(taskEmcalSM, 5, mgr->CreateContainer("listEmcalJet",
TList::Class(),
AliAnalysisManager::kOutputContainer,
"AnalysisResults_EmcalJet.root"));*/
//=============================================================================
TObjArray *aTasks = mgr->GetTasks();
for (Int_t i=0; i<aTasks->GetEntries(); i++) {
AliAnalysisTaskEmcal *taskJE = dynamic_cast<AliAnalysisTaskEmcal*>(aTasks->At(i));
if (taskJE) if (taskJE->InheritsFrom("AliAnalysisTaskEmcal")) {
taskJE->SetVzRange(-10., 10.);
if (!sCentEsti.IsNull()) {
taskJE->SetCentralityEstimator(sCentEsti.Data());
taskJE->SetCentRange(dCentMin, dCentMax);
}
}
if (wTriggerMask) {
AliAnalysisTaskSE *taskSE = dynamic_cast<AliAnalysisTaskSE*>(aTasks->At(i));
if (taskSE) if (!(taskSE->InheritsFrom("AliPhysicsSelectionTask"))) {
taskSE->SelectCollisionCandidates(wTriggerMask);
}
}
}
//=============================================================================
return kFALSE;
}
void Embedding(const char* dataset="collection.xml")
{
gSystem->Load("libTree");
gSystem->Load("libGeom");
gSystem->Load("libVMC");
gSystem->Load("libPhysics");
//load analysis framework
gSystem->Load("libSTEERBase");
gSystem->Load("libANALYSIS");
gSystem->Load("libANALYSISalice"); //AliAnalysisTaskSE
gSystem->AddIncludePath("-I$ALICE_ROOT/include -I$ALICE_ROOT/PHOS");
// A task can be compiled dynamically with AClic
gROOT->LoadMacro("AliPHOSEmbedding.cxx+g");
// Connect to alien
TString token = gSystem->Getenv("GRID_TOKEN") ;
if (1) // token == "OK" )
TGrid::Connect("alien://");
else
AliInfo("You are not connected to the GRID") ;
cout << "Pi0Analysis: processing collection " << dataset << endl;
// Create the chain
TChain* chain = new TChain("esdTree");
TGridCollection * collection = dynamic_cast<TGridCollection*>(TAlienCollection::Open(dataset));
TAlienResult* result = collection->GetGridResult("",0 ,0);
TList* rawFileList = result->GetFileInfoList();
for (Int_t counter=0 ; counter < rawFileList->GetEntries() ; counter++) {
TFileInfo * fi = static_cast<TFileInfo*>(rawFileList->At(counter)) ;
const char * rawFile = fi->GetCurrentUrl()->GetUrl() ;
printf("Processing %s\n", rawFile) ;
chain->Add(rawFile);
printf("Chain: %d entries.\n",chain->GetEntries());
}
TFileInfo * fi = static_cast<TFileInfo*>(rawFileList->At(0));
const char * fn = fi->GetCurrentUrl()->GetUrl() ;
char runNum[7];
for(Int_t i=0;i<6;i++)runNum[i]=fn[35+i] ;
runNum[6]=0 ;
Int_t iRunNum=atoi(runNum) ;
printf("Run number=%d \n",iRunNum) ;
//Run AOD simulation
int nrun = atoi(runNum);
int nevent = 0;
int seed = 0;
char sseed[1024];
char sevent[1024];
char sprocess[1024];
char sfield[1024];
char senergy[1024];
sprintf(sevent,"");
sprintf(sprocess,"");
sprintf(sfield,"");
sprintf(senergy,"");
seed = 0;
sprintf(sseed,"%d",seed);
if (seed==0) {
fprintf(stderr,"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n");
fprintf(stderr,"!!!! WARNING! Seeding variable for MC is 0 !!!!\n");
fprintf(stderr,"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n");
} else {
fprintf(stdout,"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n");
fprintf(stdout,"!!! MC Seed is %d \n",seed);
fprintf(stdout,"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n");
}
// set the seed environment variable
gSystem->Setenv("CONFIG_SEED",sseed);
gSystem->Setenv("CONFIG_RUN_TYPE","kPythia6"); // kPythia6 or kPhojet^M
gSystem->Setenv("CONFIG_FIELD","k5kG"); // kNoField or k5kG^M
gSystem->Setenv("CONFIG_ENERGY","2760"); // 900 or 10000 (GeV)
gSystem->Setenv("DC_RUN",runNum); //run number
char nSimEvents[55] ;
sprintf(nSimEvents,"%d",chain->GetEntries());
gSystem->Setenv("SIM_EVENTS",nSimEvents);
gSystem->Exec("mv geometry.root geometry_PHOS.root") ;
gSystem->Exec("aliroot -b -q simrun.C > simrun.log 2>&1");
gSystem->Exec("mv geometry_PHOS.root geometry.root") ;
// Make the analysis manager
AliAnalysisManager *mgr = new AliAnalysisManager("Pi0EmbeddingManager");
// ESD input handler
AliESDInputHandler* esdH = new AliESDInputHandler();
esdH->SetReadFriends(kFALSE);
mgr->SetInputEventHandler(esdH);
// Output
AliAODHandler* aodHandler = new AliAODHandler();
aodHandler->SetOutputFileName("AliAODout.root");
mgr->SetOutputEventHandler(aodHandler);
// Debug level
mgr->SetDebugLevel(0);
// Add physics selection
gROOT->LoadMacro("$ALICE_ROOT/OADB/macros/AddTaskPhysicsSelection.C");
AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection(kFALSE);
gROOT->LoadMacro("$ALICE_ROOT/OADB/macros/AddTaskCentrality.C");
AliCentralitySelectionTask *taskCentrality = AddTaskCentrality() ;
gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskEventplane.C");
AliEPSelectionTask *taskEP = AddTaskEventplane() ;
// Add my task
AliPHOSEmbedding *task1 = new AliPHOSEmbedding("Embedding");
TChain* chainAOD = new TChain("aodTree");
chainAOD->AddFile("AliAOD.root") ;
task1->SetSignalChain(chainAOD) ;
task1->SelectCollisionCandidates();
TFile *fOldCalib = TFile::Open("OldCalibration.root");
if(fOldCalib->IsOpen()){
printf("\n\n...Adding PHOS calibration used in ESD production \n") ;
char key[55] ;
TH2F * hCalib[5] ;
for(Int_t mod=0;mod<5; mod++){
sprintf(key,"calibrationMod%d",mod) ;
hCalib[mod] = (TH2F*)fOldCalib->Get(key) ;
}
task1->SetOldCalibration(hCalib) ;
fOldCalib->Close() ;
}
mgr->AddTask(task1);
// Create containers for input/output
AliAnalysisDataContainer *cinput = mgr->GetCommonInputContainer();
AliAnalysisDataContainer *coutput1 = mgr->CreateContainer("output0",
TTree::Class(), AliAnalysisManager::kOutputContainer);
// Connect input/output
mgr->ConnectInput(task1 , 0, cinput);
mgr->ConnectOutput(task1, 0,coutput1);
AliLog::SetClassDebugLevel("AliGeomManager", 10) ;
AliCDBManager::Instance()->SetRun(iRunNum) ;
// AliCDBManager::Instance()->SetDefaultStorage("local://$ALICE_ROOT/OCDB") ;
// AliCDBManager::Instance()->SetDefaultStorage("raw://") ;
AliCDBManager::Instance()->SetDefaultStorage("alien://folder=/alice/data/2010/OCDB") ;
AliCDBManager::Instance()->SetSpecificStorage("PHOS/*/*",
"local://OCDB");
printf("RunNunm===%d \n",iRunNum) ;
if (mgr->InitAnalysis()) {
mgr->PrintStatus();
mgr->StartAnalysis("local", chain);
}
if(iRunNum<=137848){ //period 1
gSystem->Exec("mv BadMap_LHC10h_period1.root BadMap_LHC10h.root") ;
}
else{
gSystem->Exec("mv BadMap_LHC10h_period234.root BadMap_LHC10h.root") ;
}
gSystem->Exec("aliroot -b -q AnalyzeDiff.C> analyze3.log 2>&1");
}
void AnalysisTrainMuonCAF(char* fileout = "AliAOD.root", char *datasetname = "myDataSet", Int_t nev=1234567890)
{
// Macro to produce a generic AOD starting from an ESD file.
// The AOD is filled with two tasks:
// 1- with the first one (AliAnalysisTaskESDfilter),
// all the branches of the AOD are filled apart from the muons.
// 2- with the second task (AliAnalysisTaskESDMuonFilter)
// muons tracks are added to the tracks branch
// This macro works on the CAF
// R. Arnaldi 4/5/08
gSystem->Load("libTree");
gSystem->Load("libGeom");
gSystem->Load("libVMC");
gSystem->Load("libPhysics");
// Reset user processes if CAF if not responding anymore
// TProof::Reset("lxb6046");
// Connect to proof
TProof::Open("lxb6046"); // may be username@lxb6046 if user not the same as on local
// Clear packages if changing ROOT version on CAF or local
// gProof->ClearPackages();
// Enable proof debugging if needed
// gProof->SetLogLevel(5);
// Common packages
gProof->UploadPackage("STEERBase.par");
gProof->EnablePackage("STEERBase");
gProof->UploadPackage("ESD.par");
gProof->EnablePackage("ESD");
gProof->UploadPackage("AOD.par");
gProof->EnablePackage("AOD");
gProof->UploadPackage("ANALYSIS.par");
gProof->EnablePackage("ANALYSIS");
gProof->UploadPackage("ANALYSISalice.par");
gProof->EnablePackage("ANALYSISalice");
// Analysis-specific
// --- Enable the PWG3base Package
gProof->UploadPackage("PWG3muon.par");
gProof->EnablePackage("PWG3muon");
// Chain from files staged on CAF
// gROOT->LoadMacro("CreateESDChain.C");
// TChain* chain = CreateESDChain("ESD1503X_v1.txt",3);
// TChain* chain = CreateESDChain("ESD82XX_30Kshort.txt", 10);
// Chain from datasets
gROOT->LoadMacro("CreateChainFromDataSet.C");
ds = gProof->GetDataSet(datasetname)->GetStagedSubset();
chain = CreateChainFromDataSet(ds, "esdTree");
// Make the analysis manager
AliAnalysisManager *mgr = new AliAnalysisManager("Analysis Train", "Analysis train");
// ESD input handler
AliESDInputHandler *esdHandler = new AliESDInputHandler();
esdHandler->SetInactiveBranches("FMD CaloCluster");
// AOD output handler
AliAODHandler* aodHandler = new AliAODHandler();
aodHandler->SetOutputFileName(fileout);
//aodHandler->SetOutputFileName("AOD.root");
mgr->SetInputEventHandler(esdHandler);
mgr->SetOutputEventHandler(aodHandler);
// Set of cuts plugged into the ESD filter
//
// standard
AliESDtrackCuts* esdTrackCutsL = new AliESDtrackCuts("AliESDtrackCuts", "Loose");
esdTrackCutsL->SetMinNClustersTPC(50);
esdTrackCutsL->SetMaxChi2PerClusterTPC(3.5);
esdTrackCutsL->SetMaxCovDiagonalElements(2,2,0.5,0.5,2);
esdTrackCutsL->SetRequireTPCRefit(kTRUE);
esdTrackCutsL->SetMinNsigmaToVertex(3);
esdTrackCutsL->SetRequireSigmaToVertex(kTRUE);
esdTrackCutsL->SetAcceptKingDaughters(kFALSE);
//
// hard cuts
AliESDtrackCuts* esdTrackCutsH = new AliESDtrackCuts("AliESDtrackCuts", "Hard");
esdTrackCutsH->SetMinNClustersTPC(100);
esdTrackCutsH->SetMaxChi2PerClusterTPC(2.0);
esdTrackCutsH->SetMaxCovDiagonalElements(2,2,0.5,0.5,2);
esdTrackCutsH->SetRequireTPCRefit(kTRUE);
esdTrackCutsH->SetMinNsigmaToVertex(2);
esdTrackCutsH->SetRequireSigmaToVertex(kTRUE);
esdTrackCutsH->SetAcceptKingDaughters(kFALSE);
esdTrackCutsH->SetPRange(0.,2.);
//
// muon cuts
AliESDMuonTrackCuts* esdMuonTrackCuts = new AliESDMuonTrackCuts("AliESDMuonTrackCuts", "test");
esdMuonTrackCuts->SetPRange(0.,20.);
//esdMuonTrackCuts->SetPtRange(0.,0.5); // example of kinematic cuts that can be applied
// track filter (to reject tracks not surviving the cuts - refers to all particles apart from muons)
AliAnalysisFilter* trackFilter = new AliAnalysisFilter("trackFilter");
trackFilter->AddCuts(esdTrackCutsH);
// muon track filter (to reject muon tracks not surviving the cuts)
AliAnalysisFilter* trackMuonFilter = new AliAnalysisFilter("trackMuonFilter");
trackMuonFilter->AddCuts(esdMuonTrackCuts);
// ESD filter task putting standard info to output generic AOD
AliAnalysisTaskESDfilter *esdfilter = new AliAnalysisTaskESDfilter("ESD Filter");
//esdfilter->SetTrackFilter(trackFilter);
esdfilter->SetDebugLevel(10);
mgr->AddTask(esdfilter);
// ESD filter task putting muon info to output generic AOD
AliAnalysisTaskESDMuonFilter *esdmuonfilter = new AliAnalysisTaskESDMuonFilter("ESD Muon Filter");
esdmuonfilter->SetTrackFilter(trackMuonFilter);
mgr->AddTask(esdmuonfilter);
// Containers for input/output
AliAnalysisDataContainer *cin_esd = mgr->GetCommonInputContainer();
// Output AOD container.
AliAnalysisDataContainer *cout_aod = mgr->GetCommonOutputContainer();
// Connect containers to tasks slots
mgr->ConnectInput (esdfilter, 0, cin_esd );
mgr->ConnectOutput (esdfilter, 0, cout_aod );
mgr->ConnectInput (esdmuonfilter, 0, cin_esd);
mgr->ConnectOutput (esdmuonfilter, 0, cout_aod );
//
// Run the analysis
//
if (mgr->InitAnalysis()) {
mgr->PrintStatus();
mgr->StartAnalysis("proof",chain,nev);
}
}
void runAODFilterMC()
{
// PROOF example
gSystem->Load("libTree");
gSystem->Load("libPhysics");
gSystem->Load("libGeom");
gSystem->Load("libVMC");
bool bKineFilter = true;
// TProof::Mgr("alicecaf")->SetROOTVersion("v5-21-01-alice_dbg");
TProof::Open("alicecaf");
// gProof->SetParallel(1);
char *dataset = "/COMMON/COMMON/LHC08c11_10TeV_0.5T";
// char *dataset = "/PWG4/kleinb/LHC08q_jetjet100";
// gProof->ClearPackages();
gProof->UploadPackage("${ALICE_ROOT}/STEERBase.par");
gProof->EnablePackage("STEERBase");
gProof->UploadPackage("${ALICE_ROOT}/ESD.par");
gProof->EnablePackage("ESD");
gProof->UploadPackage("${ALICE_ROOT}/AOD.par");
gProof->EnablePackage("AOD");
gProof->UploadPackage("${ALICE_ROOT}/ANALYSIS.par");
gProof->EnablePackage("ANALYSIS");
gProof->UploadPackage("${ALICE_ROOT}/ANALYSISalice.par");
gProof->EnablePackage("ANALYSISalice");
//
if (gApplication) gApplication->InitializeGraphics();
// Create the chain
//
///////////////////////////////////////////////////////////////////////////////////
// Create the analysis manager
//
// Input
AliESDInputHandler* inpHandler = new AliESDInputHandler();
// Output
AliAODHandler* aodHandler = new AliAODHandler();
aodHandler->SetOutputFileName("aod_ckb2.root");
// MC Truth
AliMCEventHandler* mcHandler = new AliMCEventHandler();
AliAnalysisManager *mgr = new AliAnalysisManager("Filter Manager", "Filter Manager");
if(bKineFilter){
mgr->SetMCtruthEventHandler(mcHandler);
}
mgr->SetInputEventHandler (inpHandler);
mgr->SetOutputEventHandler (aodHandler);
aodHandler->Dump();
mgr->SetDebugLevel(10);
// Filtering of MC particles (decays conversions etc)
// this task is also needed to set the MCEventHandler
// to the AODHandler, this will not be needed when
// AODHandler goes to ANALYSISalice
AliAnalysisTaskMCParticleFilter *kinefilter = new AliAnalysisTaskMCParticleFilter("Particle Filter");
if(bKineFilter)mgr->AddTask(kinefilter);
//
AliESDtrackCuts* esdTrackCutsL = new AliESDtrackCuts("AliESDtrackCuts", "Loose");
esdTrackCutsL->SetMinNClustersTPC(50);
esdTrackCutsL->SetMaxChi2PerClusterTPC(3.5);
esdTrackCutsL->SetMaxCovDiagonalElements(2,2,0.5,0.5,2);
esdTrackCutsL->SetRequireTPCRefit(kTRUE);
esdTrackCutsL->SetDCAToVertexZ(3.0);
esdTrackCutsL->SetDCAToVertexXY(3.0);
esdTrackCutsL->SetDCAToVertex2D(kTRUE);
esdTrackCutsL->SetRequireSigmaToVertex(kFALSE);
esdTrackCutsL->SetAcceptKinkDaughters(kFALSE);
AliESDtrackCuts* esdTrackCutsITSsa = new AliESDtrackCuts("AliESDtrackCuts", "ITS stand-alone");
esdTrackCutsITSsa->SetRequireITSStandAlone(kTRUE);
AliAnalysisFilter* trackFilter = new AliAnalysisFilter("trackFilter");
trackFilter->AddCuts(esdTrackCutsL);
trackFilter->AddCuts(esdTrackCutsITSsa);
AliAnalysisTaskESDfilter *esdfilter = new AliAnalysisTaskESDfilter("ESD Filter");
esdfilter->SetTrackFilter(trackFilter);
mgr->AddTask(esdfilter);
//
// Create containers for input/output
AliAnalysisDataContainer *cinput1 = mgr->GetCommonInputContainer();
AliAnalysisDataContainer *coutput1 = mgr->GetCommonOutputContainer();
coutput1->SetSpecialOutput();
if(bKineFilter){
mgr->ConnectInput (kinefilter, 0, cinput1 );
mgr->ConnectOutput (kinefilter, 0, coutput1 );
AliAnalysisDataContainer *coutputEx = mgr->CreateContainer("cFilterList", TList::Class(),
AliAnalysisManager::kOutputContainer,"pyxsec_hists.root");
mgr->ConnectOutput (kinefilter, 1, coutputEx );
}
mgr->ConnectInput (esdfilter, 0, cinput1 );
mgr->ConnectOutput (esdfilter, 0, coutput1 );
//
// Run the analysis
//
mgr->InitAnalysis();
mgr->PrintStatus();
mgr->StartAnalysis("proof",dataset,10000);
}
///
/// Main method calling all the configuration
///
/// The parameters passed to the analysis are:
/// \param bias : bias or not depending on EMCal signal.
/// \param mc : simulation or data.
/// \param minE : at least one cluster in EMCal with this energy.
/// \param minN : at least one cluster in EMCal with this number of cells.
/// \param vz : z vertex cut.
/// \param opt : filter EMCal only, PHOS only or both.
/// \param correct : calibrate the EMCal, remove bad cells ...
/// \param fillTrack : Fill event with hybrid tracks
/// \param fillAOD : Output AOD is filled, not used only for a secondary task analysis at the same time.
///
AliAnalysisTaskCaloFilter * AddTaskCaloFilter
( const Bool_t bias = kTRUE
, const Bool_t mc = kFALSE
, const Float_t minE = 6.
, const Int_t minN = 3
, const Float_t vz = 10.
, const Int_t opt = 0
//AliAnalysisTaskCaloFilter::kBoth,kPHOS, kEMCAL or kBoth
, const Bool_t correct = kFALSE
, const Bool_t fillTrack = kFALSE
, const Bool_t fillAOD = kTRUE)
{
// Get the pointer to the existing analysis manager via the static access method.
//==============================================================================
AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
if (!mgr)
{
::Error("AddTaskCaloFilter", "No analysis manager to connect to.");
return NULL;
}
// Check the analysis type using the event handlers connected to the analysis manager.
//==============================================================================
if (!mgr->GetInputEventHandler())
{
::Error("AddTaskCaloFilter", "This task requires an input event handler");
return NULL;
}
// Set the output AOD handler
//
printf("AddTaskCaloFilter --- Init output handler ---\n");
AliAODHandler* aodoutHandler = new AliAODHandler();
aodoutHandler->SetOutputFileName("AliAOD.EMCAL.root");
//aodoutHandler->SetCreateNonStandardAOD();
mgr->SetOutputEventHandler(aodoutHandler);
// Configure the task
//
printf("AddTaskCaloFilter --- Init task ---\n");
AliAnalysisTaskCaloFilter * filter = new AliAnalysisTaskCaloFilter("CaloFilter");
//filter->SetDebugLevel(2);
filter->SetCaloFilter(opt); //kPHOS, kEMCAL or kBoth
filter->SetVzCut(vz);
if(mc)
{
filter->SetEventSelection(1,0,0); // Select events depending on EMCAL, PHOS and tracks criteria
filter->SwitchOnAcceptAllMBEvent();
filter->SwitchOnFillMCParticles();
filter->SetEMCALEnergyCut(minE);
filter->SetEMCALNcellsCut(minN);
filter->SetPHOSEnergyCut(minE);
filter->SetPHOSNcellsCut(minN);
filter->SetTrackPtCut(minE);
printf("AddTaskCaloFilter --- Select MC events with bias in EMCal ---\n");
}
else if(bias) // select events with significant signal in EMCAL or TPC or PHOS
{
filter->SetEventSelection(1,0,0); // Select events depending on EMCAL, PHOS and tracks criteria
filter->SwitchOnAcceptAllMBEvent();
filter->SetEMCALEnergyCut(minE);
filter->SetEMCALNcellsCut(minN);
filter->SetPHOSEnergyCut(minE);
filter->SetPHOSNcellsCut(minN);
filter->SetTrackPtCut(minE);
//filter->SetMBTriggerMask(AliVEvent::kAnyINT);
filter->SetMBTriggerMask(AliVEvent::kINT7); // not working for all productions
filter->SelectCollisionCandidates(AliVEvent::kAny) ;
printf("AddTaskCaloFilter --- Select events with bias in EMCal ---\n");
}
else // Do not bias the signal in EMCAL, select MB events
{
filter->SetEventSelection(0,0,0);
filter->SwitchOnAcceptAllMBEvent();
filter->SetEMCALEnergyCut(-1);
filter->SetEMCALNcellsCut(0);
filter->SetPHOSEnergyCut(-1);
filter->SetPHOSNcellsCut(0);
filter->SetTrackPtCut(-1);
filter->SelectCollisionCandidates(AliVEvent::kINT7);// | AliVEvent::kCentral | AliVEvent::kSemiCentral ) ;
printf("AddTaskCaloFilter --- Select INT7 events ---\n");
}
// Activate the cluster corrections (calibration, bad map...)
//
if(correct) filter->SwitchOnClusterCorrection();
else filter->SwitchOffClusterCorrection();
// Exoticity cut settings
//
AliEMCALRecoUtils * reco = filter->GetEMCALRecoUtils();
reco->SwitchOnRejectExoticCluster() ;
reco->SetExoticCellFractionCut(0.97);
reco->SetExoticCellMinAmplitudeCut(4.);
// Track storing
//
if(fillTrack) { filter->SwitchOnFillTracks() ; filter->SwitchOnFillHybridTracks() ; }
else { filter->SwitchOffFillTracks() ; filter->SwitchOffFillHybridTracks() ; }
// Other options to store in event
//
filter->SwitchOffFillv0s() ; // Put ON if you know what you do.
filter->SwitchOnFillVZERO(); // Be able to recalculate centrality and event plane
// afterwards even it is stored in header
// AOD output storing
//
if(fillAOD) filter->SwitchOnFillAODFile();
else filter->SwitchOffFillAODFile();
// Pass the task to the manager, print first set parameters
filter->PrintInfo();
mgr->AddTask(filter);
// Create containers for input/output
//
printf("AddTaskCaloFilter --- Created input/output containers ---\n");
AliAnalysisDataContainer *cinput1 = mgr->GetCommonInputContainer();
AliAnalysisDataContainer *coutput1 = mgr->GetCommonOutputContainer();
printf("AddTaskCaloFilter --- Created containers, add them ---\n");
mgr->ConnectInput (filter, 0, cinput1 );
mgr->ConnectOutput (filter, 0, coutput1 );
printf("AddTaskCaloFilter --- End ---\n");
return filter;
}
//______________________________________________________________________________
void AODtrain(Int_t merge=0)
{
// Main analysis train macro.
ProcessEnvironment();
UpdateFlags();
PrintSettings();
if (merge || doCDBconnect) {
TGrid::Connect("alien://");
if (!gGrid || !gGrid->IsConnected()) {
::Error("AODtrain", "No grid connection");
return;
}
}
// Set temporary merging directory to current one
gSystem->Setenv("TMPDIR", gSystem->pwd());
// Set temporary compilation directory to current one
gSystem->SetBuildDir(gSystem->pwd(), kTRUE);
printf("==================================================================\n");
printf("=========== RUNNING FILTERING TRAIN ==========\n");
printf("=========== Collision System is %s ==========\n",CollisionSystem[iCollision]);
printf("==================================================================\n");
printf("= Configuring analysis train for: =\n");
if (usePhysicsSelection) printf("= Physics selection =\n");
if (useTender) printf("= TENDER =\n");
if (iESDfilter) printf("= ESD filter =\n");
if (iMUONcopyAOD) printf("= MUON copy AOD =\n");
if (iJETAN) printf("= Jet analysis =\n");
if (iJETANdelta) printf("= Jet delta AODs =\n");
if (iPWGHFvertexing) printf("= PWGHF vertexing =\n");
if (iPWGDQJPSIfilter) printf("= PWGDQ j/psi filter =\n");
if (iPWGHFd2h) printf("= PWGHF D0->2 hadrons QA =\n");
// Make the analysis manager and connect event handlers
AliAnalysisManager *mgr = new AliAnalysisManager("Analysis Train", "Production train");
mgr->SetCacheSize(0);
if (useSysInfo) {
//mgr->SetNSysInfo(100);
AliSysInfo::SetVerbose(kTRUE);
}
// Create input handler (input container created automatically)
// ESD input handler
AliESDInputHandler *esdHandler = new AliESDInputHandler();
mgr->SetInputEventHandler(esdHandler);
// Monte Carlo handler
if (useMC) {
AliMCEventHandler* mcHandler = new AliMCEventHandler();
mgr->SetMCtruthEventHandler(mcHandler);
mcHandler->SetReadTR(useTR);
}
// AOD output container, created automatically when setting an AOD handler
if (iAODhandler) {
// AOD output handler
AliAODHandler* aodHandler = new AliAODHandler();
aodHandler->SetOutputFileName("AliAOD.root");
mgr->SetOutputEventHandler(aodHandler);
}
// Debugging if needed
if (useDBG) mgr->SetDebugLevel(3);
AddAnalysisTasks(cdbPath);
if (merge) {
AODmerge();
mgr->InitAnalysis();
mgr->SetGridHandler(new AliAnalysisAlien);
mgr->StartAnalysis("gridterminate",0);
return;
}
// Run the analysis
//
TChain *chain = CreateChain();
if (!chain) return;
TStopwatch timer;
timer.Start();
mgr->SetSkipTerminate(kTRUE);
if (mgr->InitAnalysis()) {
mgr->PrintStatus();
mgr->StartAnalysis("local", chain);
}
timer.Print();
}
void anaCaloFilter(Int_t mode=mLocal)
{
// Main
char cmd[200] ;
sprintf(cmd, ".! rm -rf AliAOD.root") ;
gROOT->ProcessLine(cmd) ;
//--------------------------------------------------------------------
// Load analysis libraries
// Look at the method below,
// change whatever you need for your analysis case
// ------------------------------------------------------------------
LoadLibraries(mode) ;
//-------------------------------------------------------------------------------------------------
//Create chain from ESD and from cross sections files, look below for options.
//-------------------------------------------------------------------------------------------------
if(kInputData == "ESD") kTreeName = "esdTree" ;
else if(kInputData == "AOD") kTreeName = "aodTree" ;
else {
cout<<"Wrong data type "<<kInputData<<endl;
break;
}
TChain *chain = new TChain(kTreeName) ;
CreateChain(mode, chain);
if(chain){
AliLog::SetGlobalLogLevel(AliLog::kError);//Minimum prints on screen
//--------------------------------------
// Make the analysis manager
//-------------------------------------
AliAnalysisManager *mgr = new AliAnalysisManager("Manager", "Manager");
// AOD output handler
AliAODHandler* aodoutHandler = new AliAODHandler();
aodoutHandler->SetOutputFileName("AliAOD.root");
////aodoutHandler->SetCreateNonStandardAOD();
mgr->SetOutputEventHandler(aodoutHandler);
//input
if(kInputData == "ESD")
{
// ESD handler
AliESDInputHandler *esdHandler = new AliESDInputHandler();
mgr->SetInputEventHandler(esdHandler);
esdHandler->SetReadFriends(kFALSE);
cout<<"ESD handler "<<mgr->GetInputEventHandler()<<endl;
}
if(kInputData == "AOD")
{
// AOD handler
AliAODInputHandler *aodHandler = new AliAODInputHandler();
mgr->SetInputEventHandler(aodHandler);
cout<<"AOD handler "<<mgr->GetInputEventHandler()<<endl;
}
// mgr->SetDebugLevel(1);
//-------------------------------------------------------------------------
//Define task, put here any other task that you want to use.
//-------------------------------------------------------------------------
// ESD physics selection task
if(kInputData == "ESD" && kUsePhysSel)
{
gROOT->LoadMacro("$ALICE_PHYSICS/OADB/macros/AddTaskPhysicsSelection.C");
AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection();
}
gROOT->LoadMacro("AddTaskCaloFilter.C");
AliAnalysisTaskCaloFilter* filter = AddTaskCaloFilter();
//AliAnalysisTaskCaloFilter * filter = new AliAnalysisTaskCaloFilter();
//filter->SetConfigFileName("ConfigCaloFilter.C");
//mgr->AddTask(filter);
// Create containers for input/output
AliAnalysisDataContainer *cinput1 = mgr->GetCommonInputContainer();
AliAnalysisDataContainer *coutput1 = mgr->GetCommonOutputContainer();
AliAnalysisDataContainer *coutntuple = mgr->CreateContainer("EventNtuple", TNtuple::Class(),
AliAnalysisManager::kOutputContainer, "eventselection.root");
mgr->ConnectInput (filter, 0, cinput1);
mgr->ConnectOutput (filter, 0, coutput1 );
mgr->ConnectOutput (filter, 1, coutntuple );
//-----------------------
// Run the analysis
//-----------------------
TString smode = "";
if (mode==mLocal || mode == mLocalCAF)
smode = "local";
else if (mode==mPROOF)
smode = "proof";
else if (mode==mGRID)
smode = "local";
mgr->InitAnalysis();
mgr->PrintStatus();
mgr->StartAnalysis(smode.Data(),chain);
cout <<" Analysis ended sucessfully "<< endl ;
}
else cout << "Chain was not produced ! "<<endl;
//sprintf(cmd, ".! rm -rf CorrectionFiles") ;
}
