コード例 #1
0
TempReadAlignment::TempReadAlignment(AlignmentPtr alignment, 
                                     char* path)
  : _path(path)
{
  alignment->close();
  alignment->open(_path, true);
  _alignment = alignment;
}
コード例 #2
0
void GenomeUpdateTest::createCallBack(AlignmentPtr alignment)
{
  hal_size_t alignmentSize = alignment->getNumGenomes();
  CuAssertTrue(_testCase, alignmentSize == 0);
  
  Genome* ancGenome = alignment->addRootGenome("AncGenome", 0);
  vector<Sequence::Info> seqVec(1);
  seqVec[0] = Sequence::Info("Sequence", 1000000, 5000, 700000);
  ancGenome->setDimensions(seqVec);  
  alignment->close();

  alignment->open(_createPath, false);
  ancGenome = alignment->openGenome("AncGenome");
  seqVec[0] = Sequence::Info("Sequence", 10000005, 14000, 2000001);
  ancGenome->setDimensions(seqVec);  
}