void
AnalysisDataModuleManager::Impl::presentData(AbstractAnalysisData *data,
AnalysisDataModuleInterface *module)
{
if (state_ == eNotStarted)
{
return;
}
GMX_RELEASE_ASSERT(state_ != eInFrame,
"Cannot apply a modules in mid-frame");
module->dataStarted(data);
const bool bCheckMissing = bAllowMissing_
&& !(module->flags() & AnalysisDataModuleInterface::efAllowMissing);
for (int i = 0; i < data->frameCount(); ++i)
{
AnalysisDataFrameRef frame = data->getDataFrame(i);
GMX_RELEASE_ASSERT(frame.isValid(), "Invalid data frame returned");
// TODO: Check all frames before doing anything for slightly better
// exception behavior.
if (bCheckMissing && !frame.allPresent())
{
GMX_THROW(APIError("Missing data not supported by a module"));
}
module->frameStarted(frame.header());
for (int j = 0; j < frame.pointSetCount(); ++j)
{
module->pointsAdded(frame.pointSet(j));
}
module->frameFinished(frame.header());
}
if (state_ == eFinished)
{
module->dataFinished();
}
}
void
AbstractAnalysisData::Impl::presentData(AbstractAnalysisData *data,
AnalysisDataModuleInterface *module)
{
module->dataStarted(data);
bool bCheckMissing = bAllowMissing_
&& !(module->flags() & AnalysisDataModuleInterface::efAllowMissing);
for (int i = 0; i < data->frameCount(); ++i)
{
AnalysisDataFrameRef frame = data->getDataFrame(i);
GMX_RELEASE_ASSERT(frame.isValid(), "Invalid data frame returned");
// TODO: Check all frames before doing anything for slightly better
// exception behavior.
if (bCheckMissing && !frame.allPresent())
{
GMX_THROW(APIError("Missing data not supported by a module"));
}
module->frameStarted(frame.header());
module->pointsAdded(frame.points());
module->frameFinished(frame.header());
}
if (!bInData_)
{
module->dataFinished();
}
}
AnalysisDataFrameRef::AnalysisDataFrameRef(
const AnalysisDataFrameRef &frame, int firstColumn, int columnCount)
: header_(frame.header()), values_(&frame.values_[firstColumn], columnCount)
{
GMX_ASSERT(firstColumn >= 0, "Invalid first column");
GMX_ASSERT(columnCount >= 0, "Invalid column count");
GMX_ASSERT(firstColumn + columnCount <= frame.columnCount(),
"Invalid last column");
}
AnalysisDataFrameRef::AnalysisDataFrameRef(
const AnalysisDataFrameRef &frame, int firstColumn, int columnCount)
: header_(frame.header()),
values_(constArrayRefFromArray(&frame.values_[firstColumn], columnCount)),
pointSets_(frame.pointSets_)
{
// FIXME: This doesn't produce a valid internal state, although it does
// work in some cases. The point sets cannot be correctly managed here, but
// need to be handles by the data proxy class.
GMX_ASSERT(firstColumn >= 0, "Invalid first column");
GMX_ASSERT(columnCount >= 0, "Invalid column count");
GMX_ASSERT(pointSets_.size() == 1U,
"Subsets of frames only supported with simple data");
GMX_ASSERT(firstColumn + columnCount <= ssize(values_),
"Invalid last column");
}