// TODO Replace the recursive call (not critical since only used for debug)
void CEvaluationNode::printRecursively(std::ostream & os, int indent) const
{
int i;
os << std::endl;
for (i = 0; i < indent; ++i) os << " ";
os << "mData: " << mData << std::endl;
for (i = 0; i < indent; ++i) os << " ";
os << "mType: " << type(mType) << " subType: " << subType(mType) << std::endl;
for (i = 0; i < indent; ++i) os << " ";
os << "mValue: " << mValue << std::endl;
CEvaluationNode* tmp;
tmp = (CEvaluationNode*)getChild();
while (tmp)
{
tmp -> printRecursively(os, indent + 2);
tmp = (CEvaluationNode*)tmp->getSibling();
}
}
//static
void CDerive::compileTree(CEvaluationNode* node, const CEvaluationTree * pTree)
{
if (!node) return;
node->compile(pTree);
CEvaluationNode* child = dynamic_cast<CEvaluationNode*>(node->getChild());
while (child != NULL)
{
compileTree(child, pTree);
child = dynamic_cast<CEvaluationNode*>(child->getSibling());
}
}
void CMathObject::appendDelays(CMath::DelayData & Delays) const
{
if (mpExpression == NULL)
{
return;
}
std::vector< CEvaluationNode * >::const_iterator it = mpExpression->getNodeList().begin();
std::vector< CEvaluationNode * >::const_iterator end = mpExpression->getNodeList().end();
for (; it != end; ++it)
{
switch (CEvaluationNode::type((*it)->getType()))
{
case CEvaluationNode::DELAY:
{
CEvaluationNode * pValueExpression = static_cast< CEvaluationNode * >((*it)->getChild());
std::string Expression = static_cast< CEvaluationNode * >(pValueExpression->getSibling())->buildInfix();
CMath::DelayData::iterator found = Delays.find(Expression);
if (found == Delays.end())
{
found = Delays.insert(std::make_pair(Expression, CMath::DelayValueData()));
}
Expression = pValueExpression->buildInfix();
found->second.insert(std::make_pair(Expression, std::make_pair((*it)->buildInfix(), const_cast< CMathObject * >(this))));
}
break;
default:
break;
}
}
return;
}
void test_compare_utilities::test_copasi_function_expansion()
{
CCopasiDataModel* pDataModel = pCOPASIDATAMODEL;;
std::istringstream iss(test_compare_utilities::MODEL_STRING1);
CPPUNIT_ASSERT(load_cps_model_from_stream(iss, *pDataModel) == true);
CFunctionDB* pFunctionDB = CCopasiRootContainer::getFunctionList();
// function_5
CEvaluationTree* pTree = pFunctionDB->findFunction("function_4");
CPPUNIT_ASSERT(pTree != NULL);
// generate a call node
CFunction* pFunction = dynamic_cast<CFunction*>(pTree);
CPPUNIT_ASSERT(pFunction != NULL);
CEvaluationNodeCall* pCallNode = new CEvaluationNodeCall(CEvaluationNode::S_FUNCTION, pFunction->getObjectName());
CPPUNIT_ASSERT(pCallNode != NULL);
CFunctionParameters* pFunctionParameters = &pFunction->getVariables();
unsigned int i = 0, iMax = pFunctionParameters->size();
while (i < iMax)
{
CFunctionParameter* pParameter = (*pFunctionParameters)[i];
CPPUNIT_ASSERT(pParameter != NULL);
CEvaluationNodeVariable* pVariableNode = new CEvaluationNodeVariable(CEvaluationNode::S_DEFAULT, pParameter->getObjectName());
pCallNode->addChild(pVariableNode);
++i;
}
CEvaluationNode* pExpanded = expand_function_calls(pCallNode, pFunctionDB);
delete pCallNode;
CPPUNIT_ASSERT(pExpanded != NULL);
CPPUNIT_ASSERT(pExpanded->mainType() == CEvaluationNode::T_OPERATOR);
CPPUNIT_ASSERT(pExpanded->subType() == CEvaluationNode::S_DIVIDE);
CEvaluationNode* pChild = dynamic_cast<CEvaluationNode*>(pExpanded->getChild());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_OPERATOR);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_PLUS);
pChild = dynamic_cast<CEvaluationNode*>(pChild->getChild());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_VARIABLE);
CPPUNIT_ASSERT(pChild->getData() == std::string("y"));
pChild = dynamic_cast<CEvaluationNode*>(pChild->getSibling());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_VARIABLE);
CPPUNIT_ASSERT(pChild->getData() == std::string("x"));
CPPUNIT_ASSERT(pChild->getSibling() == NULL);
pChild = dynamic_cast<CEvaluationNode*>(pExpanded->getChild()->getSibling());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_NUMBER);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_DOUBLE);
CPPUNIT_ASSERT((fabs(pChild->getValue() - 2.0) / 2.0) < 1e-6);
CPPUNIT_ASSERT(pChild->getSibling() == NULL);
delete pExpanded;
// function_5
pTree = pFunctionDB->findFunction("function_5");
CPPUNIT_ASSERT(pTree != NULL);
// generate a call node
pFunction = dynamic_cast<CFunction*>(pTree);
CPPUNIT_ASSERT(pFunction != NULL);
pCallNode = new CEvaluationNodeCall(CEvaluationNode::S_FUNCTION, pFunction->getObjectName());
CPPUNIT_ASSERT(pCallNode != NULL);
pFunctionParameters = &pFunction->getVariables();
i = 0, iMax = pFunctionParameters->size();
while (i < iMax)
{
CFunctionParameter* pParameter = (*pFunctionParameters)[i];
CPPUNIT_ASSERT(pParameter != NULL);
CEvaluationNodeVariable* pVariableNode = new CEvaluationNodeVariable(CEvaluationNode::S_DEFAULT, pParameter->getObjectName());
pCallNode->addChild(pVariableNode);
++i;
}
pExpanded = expand_function_calls(pCallNode, pFunctionDB);
delete pCallNode;
CPPUNIT_ASSERT(pExpanded != NULL);
CPPUNIT_ASSERT(pExpanded->mainType() == CEvaluationNode::T_OPERATOR);
CPPUNIT_ASSERT(pExpanded->subType() == CEvaluationNode::S_PLUS);
pChild = dynamic_cast<CEvaluationNode*>(pExpanded->getChild());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_OPERATOR);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_MINUS);
pChild = dynamic_cast<CEvaluationNode*>(pChild->getChild());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_VARIABLE);
CPPUNIT_ASSERT(pChild->getData() == std::string("a"));
pChild = dynamic_cast<CEvaluationNode*>(pChild->getSibling());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_OPERATOR);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_MULTIPLY);
CPPUNIT_ASSERT(pChild->getSibling() == NULL);
pChild = dynamic_cast<CEvaluationNode*>(pChild->getChild());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_VARIABLE);
CPPUNIT_ASSERT(pChild->getData() == std::string("c"));
pChild = dynamic_cast<CEvaluationNode*>(pChild->getSibling());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_NUMBER);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_DOUBLE);
CPPUNIT_ASSERT((fabs(pChild->getValue() - 1.3) / 1.3) < 1e-6);
CPPUNIT_ASSERT(pChild->getSibling() == NULL);
// (3*b)-5.23
pChild = dynamic_cast<CEvaluationNode*>(pExpanded->getChild()->getSibling());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_OPERATOR);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_MINUS);
// 3*b
pChild = dynamic_cast<CEvaluationNode*>(pChild->getChild());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_OPERATOR);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_MULTIPLY);
pChild = dynamic_cast<CEvaluationNode*>(pChild->getChild());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_NUMBER);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_DOUBLE);
CPPUNIT_ASSERT((fabs(pChild->getValue() - 3.0) / 3.0) < 1e-6);
pChild = dynamic_cast<CEvaluationNode*>(pChild->getSibling());
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_VARIABLE);
CPPUNIT_ASSERT(pChild->getData() == std::string("b"));
CPPUNIT_ASSERT(pChild->getSibling() == NULL);
// 5.23
pChild = dynamic_cast<CEvaluationNode*>(pExpanded->getChild()->getSibling()->getChild()->getSibling());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_NUMBER);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_DOUBLE);
CPPUNIT_ASSERT((fabs(pChild->getValue() - 5.23) / 5.23) < 1e-6);
CPPUNIT_ASSERT(pChild->getSibling() == NULL);
delete pExpanded;
// function_6
pTree = pFunctionDB->findFunction("function_6");
CPPUNIT_ASSERT(pTree != NULL);
// generate a call node
pFunction = dynamic_cast<CFunction*>(pTree);
CPPUNIT_ASSERT(pFunction != NULL);
pCallNode = new CEvaluationNodeCall(CEvaluationNode::S_FUNCTION, pFunction->getObjectName());
CPPUNIT_ASSERT(pCallNode != NULL);
pFunctionParameters = &pFunction->getVariables();
i = 0, iMax = pFunctionParameters->size();
while (i < iMax)
{
CFunctionParameter* pParameter = (*pFunctionParameters)[i];
CPPUNIT_ASSERT(pParameter != NULL);
CEvaluationNodeVariable* pVariableNode = new CEvaluationNodeVariable(CEvaluationNode::S_DEFAULT, pParameter->getObjectName());
pCallNode->addChild(pVariableNode);
++i;
}
pExpanded = expand_function_calls(pCallNode, pFunctionDB);
delete pCallNode;
CPPUNIT_ASSERT(pExpanded != NULL);
// (k1-k3*1.3)+((3*k2)-5.23)
CPPUNIT_ASSERT(pExpanded->mainType() == CEvaluationNode::T_OPERATOR);
CPPUNIT_ASSERT(pExpanded->subType() == CEvaluationNode::S_PLUS);
pChild = dynamic_cast<CEvaluationNode*>(pExpanded->getChild());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_OPERATOR);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_MINUS);
pChild = dynamic_cast<CEvaluationNode*>(pChild->getChild());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_VARIABLE);
CPPUNIT_ASSERT(pChild->getData() == std::string("k1"));
pChild = dynamic_cast<CEvaluationNode*>(pChild->getSibling());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_OPERATOR);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_MULTIPLY);
CPPUNIT_ASSERT(pChild->getSibling() == NULL);
pChild = dynamic_cast<CEvaluationNode*>(pChild->getChild());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_VARIABLE);
CPPUNIT_ASSERT(pChild->getData() == std::string("k3"));
pChild = dynamic_cast<CEvaluationNode*>(pChild->getSibling());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_NUMBER);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_DOUBLE);
CPPUNIT_ASSERT((fabs(pChild->getValue() - 1.3) / 1.3) < 1e-6);
CPPUNIT_ASSERT(pChild->getSibling() == NULL);
// (3*b)-5.23
pChild = dynamic_cast<CEvaluationNode*>(pExpanded->getChild()->getSibling());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_OPERATOR);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_MINUS);
// 3*b
pChild = dynamic_cast<CEvaluationNode*>(pChild->getChild());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_OPERATOR);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_MULTIPLY);
pChild = dynamic_cast<CEvaluationNode*>(pChild->getChild());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_NUMBER);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_DOUBLE);
CPPUNIT_ASSERT((fabs(pChild->getValue() - 3.0) / 3.0) < 1e-6);
pChild = dynamic_cast<CEvaluationNode*>(pChild->getSibling());
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_VARIABLE);
CPPUNIT_ASSERT(pChild->getData() == std::string("k2"));
CPPUNIT_ASSERT(pChild->getSibling() == NULL);
// 5.23
pChild = dynamic_cast<CEvaluationNode*>(pExpanded->getChild()->getSibling()->getChild()->getSibling());
CPPUNIT_ASSERT(pChild != NULL);
CPPUNIT_ASSERT(pChild->mainType() == CEvaluationNode::T_NUMBER);
CPPUNIT_ASSERT(pChild->subType() == CEvaluationNode::S_DOUBLE);
CPPUNIT_ASSERT((fabs(pChild->getValue() - 5.23) / 5.23) < 1e-6);
CPPUNIT_ASSERT(pChild->getSibling() == NULL);
delete pExpanded;
}