コード例 #1
0
AnyType yams_Op::operator () (Stack stack)  const {
	// initialisation
	MeshPoint *mp(MeshPointStack(stack)), mps = *mp;
	Mesh3 *pTh = GetAny<Mesh3 *>((*eTh)(stack));

	ffassert(pTh);
	Mesh3 &Th3 = *pTh;
	int nv = Th3.nv;
	int nt = Th3.nt;
	int nbe = Th3.nbe;

	KN<int> defaultintopt(23);
	KN<double> defaultfopt(14);
	defaultintopt = 0;
	defaultfopt = 0.;
	yams_inival(defaultintopt, defaultfopt);

	KN<int> intopt(23);

	for (int ii = 0; ii < 23; ii++) {
		intopt[ii] = defaultintopt[ii];
	}

	KN<double> fopt(14);

	for (int ii = 0; ii < 14; ii++) {
		fopt[ii] = defaultfopt[ii];
	}

	assert(fopt.N() == 14);

	if (nargs[0]) {
		KN<int> intopttmp = GetAny<KN_<long> >((*nargs[0])(stack));
		if (intopttmp.N() != 13) {
			cerr << "the size of vector loptions is 13 " << endl;
			exit(1);
		} else {
			for (int ii = 0; ii < 13; ii++) {
				intopt[wrapper_intopt[ii]] = intopttmp[ii];
			}
		}
	}

	if (nargs[1]) {
		KN<double> fopttmp = GetAny<KN_<double> >((*nargs[1])(stack));
		if (fopttmp.N() != 11) {
			cerr << "the size of vector loptions is 11 not " << fopttmp.N() << endl;
			ExecError("FreeYams");
		} else {
			for (int ii = 0; ii < 11; ii++) {
				fopt[wrapper_fopt[ii]] = fopttmp[ii];
			}
		}
	}

	intopt[0] = arg(3, stack, intopt[0] != 1);
	intopt[8] = arg(4, stack, intopt[8]);
	fopt[7] = arg(5, stack, fopt[7]);
	fopt[8] = arg(6, stack, fopt[7]);
	fopt[6] = arg(7, stack, fopt[6]);
	intopt[22] = arg(8, stack, intopt[22]);	// optim option
	if (nargs[9]) {intopt[17] = 1;}

	fopt[13] = arg(9, stack, fopt[13]);	// ridge angle
	intopt[21] = arg(10, stack, intopt[21]);// absolue
	intopt[11] = arg(11, stack, (int)verbosity);// verbosity
	intopt[17] = arg(12, stack, intopt[17]);// no ridge
	intopt[18] = arg(13, stack, intopt[18]);// nb smooth
	if (verbosity > 1) {
		cout << " fopt = [";

		for (int i = 0; i < 11; ++i) {
			cout << fopt[wrapper_fopt[i]] << (i < 10 ? "," : "];\n");
		}

		cout << " intopt = [";

		for (int i = 0; i < 13; ++i) {
			cout << intopt[wrapper_intopt[i]] << (i < 12 ? "," : "];\n");
		}
	}

	/*
	 * KN<int> intopt(arg(0,stack,defaultintopt));
	 * assert( intopt.N() == 23 );
	 * KN<double> fopt(arg(1,stack,defaultfopt));
	 * assert( fopt.N() == 14 );
	 */
	KN<double> metric;

	int mtype = type;
	if (nargs[2]) {
		metric = GetAny<KN_<double> >((*nargs[2])(stack));
		if (metric.N() == Th3.nv) {
			mtype = 1;
			intopt[1] = 0;
		} else if (metric.N() == 6 * Th3.nv) {
			intopt[1] = 1;
			mtype = 3;
		} else {
			cerr << "sizeof vector metric is incorrect, size will be Th.nv or 6*Th.nv" << endl;
		}
	} else if (nbsol > 0) {
		if (type == 1) {
			intopt[1] = 0;
			metric.resize(Th3.nv);
			metric = 0.;
		} else if (type == 3) {
			intopt[1] = 1;
			metric.resize(6 * Th3.nv);
			metric = 0.;
		}
	} else {
		if (intopt[1] == 0) {metric.resize(Th3.nv); metric = 0.;} else if (intopt[1] == 1) {metric.resize(6 * Th3.nv); metric = 0.;}
	}

	// mesh for yams
	yams_pSurfMesh yamsmesh;
	yamsmesh = (yams_pSurfMesh)calloc(1, sizeof(yams_SurfMesh));
	if (!yamsmesh) {
		cerr << "allocation error for SurfMesh for yams" << endl;
	}

	yamsmesh->infile = NULL;
	yamsmesh->outfile = NULL;
	yamsmesh->type = M_SMOOTH | M_QUERY | M_DETECT | M_BINARY | M_OUTPUT;

	mesh3_to_yams_pSurfMesh(Th3, intopt[8], intopt[22], yamsmesh);

	// solution for freeyams2
	if (nbsol) {
		MeshPoint *mp3(MeshPointStack(stack));

		KN<bool> takemesh(nv);
		takemesh = false;

		for (int it = 0; it < nt; it++) {
			for (int iv = 0; iv < 4; iv++) {
				int i = Th3(it, iv);

				if (takemesh[i] == false) {
					mp3->setP(&Th3, it, iv);

					for (int ii = 0; ii < nbsolsize; ii++) {
						metric[i * nbsolsize + ii] = GetAny<double>((*sol[ii])(stack));
					}

					takemesh[i] = true;
				}
			}
		}
	}

	if (verbosity > 10) {
		cout << "nbsol  " << nargs[2] << endl;
	}

	if (nargs[2] || (nbsol > 0)) {
		float hmin, hmax;
		solyams_pSurfMesh(yamsmesh, mtype, metric, hmin, hmax);
		yamsmesh->nmfixe = yamsmesh->npfixe;
		if (fopt[7] < 0.0) {
			fopt[7] = max(fopt[7], hmin);
		}

		if (fopt[8] < 0.0) {
			fopt[8] = max(fopt[8], hmax);
		}
	} else {
		yamsmesh->nmfixe = 0;
	}

	int infondang = 0, infocc = 0;
	int res = yams_main(yamsmesh, intopt, fopt, infondang, infocc);
	if (verbosity > 10) {
		cout << " yamsmesh->dim " << yamsmesh->dim << endl;
	}

	if (res > 0) {
		cout << " problem with yams :: error " << res << endl;
		ExecError("Freeyams error");
	}

	Mesh3 *Th3_T = yams_pSurfMesh_to_mesh3(yamsmesh, infondang, infocc, intopt[22]);

	// recuperer la solution ????
	if (verbosity > 10) {
		cout << &yamsmesh->point << " " << &yamsmesh->tria << " " << &yamsmesh->geom << " " << &yamsmesh->tgte << endl;
		cout << &yamsmesh << endl;
	}

	free(yamsmesh->point);
	free(yamsmesh->tria);
	free(yamsmesh->geom);
	free(yamsmesh->tgte);
	if (yamsmesh->metric) {free(yamsmesh->metric);}

	if (yamsmesh->edge) {free(yamsmesh->edge);}

	if (yamsmesh->tetra) {free(yamsmesh->tetra);}

	free(yamsmesh);

	*mp = mps;
	Add2StackOfPtr2FreeRC(stack, Th3_T);
	return SetAny<pmesh3>(Th3_T);
}
コード例 #2
0
  dSolvepastixmpi(const MatriceMorse<double> &AA, string datafile, KN<long> &param_int, KN<double> &param_double, 
		  KN<long> &pperm_r, KN<long> &pperm_c) : 
    data_option(datafile) 
  { 
    //int m;
    //int ierr;
    struct timeval  tv1, tv2;
   
    ia    = NULL;
    ja    = NULL;
    avals   = NULL;
    loc2glob = NULL;
    rhs     = NULL;
    pastix_data = NULL;
    
    // matrix assembled on host
    MPI_Comm_rank(MPI_COMM_WORLD, &myid);
    printf("- Rang MPI : %d\n", myid);
    MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
    // SYMETRIQUE
    mpi_flag  = 0;
    thrd_flag = 0;
        
    Ncol = AA.m;
    Nrow = AA.n;
  
    // Avant : on ecrit la transposée
    /*
      ia = (pastix_int_t *) malloc( (Ncol+1)*sizeof(pastix_int_t));
      for(int ii=0; ii < Ncol+1; ii++){
      ia[ii] = AA.lg[ii]+1;
      }
      assert( ia[Ncol]-1 == AA.nbcoef );
      
      ja = (pastix_int_t *) malloc((ia[Ncol]-1)*sizeof(pastix_int_t));
      for(int ii=0; ii < ia[Ncol]-1; ii++)
      ja[ii] = AA.cl[ii]+1;
      
      
      if( sizeof(pastix_float_t) == sizeof(double) ){
      avals = (pastix_float_t *) malloc( (ia[Ncol]-1)*sizeof(pastix_float_t));
      for(int ii=0; ii < ia[Ncol]-1; ii++)
      avals[ii] = AA.a[ii];
      }
    */    
    // AA.cl : indices des colonnes
    // AA.lg : pointeurs des lignes
    Morse_to_CSC( AA.n , AA.m, AA.nbcoef, AA.a, AA.cl, AA.lg, &avals, &ja, &ia);
    // ia : pointeurs des colonnes
    // ja : indices des lignes
    
    cout << "AA.n= "<< AA.n << " AA.m=" <<  AA.m << " AA.nbcoef=" << AA.nbcoef << endl;
    
    for(int ii=0; ii < Ncol+1; ii++){
      ia[ii] = ia[ii]+1;
    }
    assert( ia[Ncol]-1 == AA.nbcoef );
    for(int ii=0; ii < ia[Ncol]-1; ii++){
      ja[ii] = ja[ii]+1; 
    }
       
    perm = (pastix_int_t *) malloc(Ncol*sizeof(pastix_int_t));
    invp = (pastix_int_t *) malloc(Ncol*sizeof(pastix_int_t));
    
    rhs = (pastix_float_t *) malloc(Ncol*sizeof(pastix_float_t));
    
    // reading permutation given by the user
    if(pperm_r) 
      for(int ii=0; ii < Ncol; ii++)
	perm[ii] = pperm_r[ii];
    if(pperm_c)  
      for(int ii=0; ii < Ncol; ii++)
	invp[ii] = pperm_c[ii];
   

    // CAS DE LA  MATRICE NON DISTRIBUER
    pastix_int_t init_raff;
    fprintf(stdout,"-- INIT PARAMETERS --\n");
    
    

    // reading iparm from array    
    if(!data_option.empty()) read_datafile_pastixff(data_option,iparm,dparm);
    else if(param_int || param_double){
      if( param_int ) 
      {
	cout << "read param_int" << endl;
	assert(param_int.N() == 64);
	for(int ii=0; ii<64; ii++) 
	  iparm[ii] = param_int[ii];
	iparm[IPARM_MODIFY_PARAMETER] = API_YES;
      }
      if( param_double ) 
      {
	cout << "read param_double" << endl;
	assert(param_double.N() == 64);
	for(int ii=0; ii<64; ii++) 
	  dparm[ii] = param_double[ii];
      }
    }  
    else{
      iparm[IPARM_MODIFY_PARAMETER] = API_NO;
      cout << "initialize parameter" << endl;
    }
  
    iparm[IPARM_START_TASK] = API_TASK_INIT;
    iparm[IPARM_END_TASK]   = API_TASK_INIT;
    iparm[IPARM_SYM] = API_SYM_NO; // Matrix is considered nonsymetric
    
    pastix(&pastix_data, MPI_COMM_WORLD, Ncol,ia,ja,avals,perm,invp,rhs,1,iparm,dparm); 
    fprintf(stdout,"-- FIN INIT PARAMETERS --\n");
    init_raff = iparm[IPARM_ITERMAX];
    
    fflush(stdout);
    /* Passage en mode verbose */
    
    iparm[IPARM_RHS_MAKING] = API_RHS_B;
    if( !param_int && data_option.empty() ){
      iparm[IPARM_MATRIX_VERIFICATION] = API_YES;
      iparm[IPARM_REFINEMENT] = API_RAF_GMRES;
      iparm[IPARM_INCOMPLETE] = API_NO;
    }

    if( !param_double && data_option.empty()){
      dparm[DPARM_EPSILON_REFINEMENT] = 1e-12;
      dparm[DPARM_EPSILON_MAGN_CTRL] = 1e-32;
    }

    SYM = AA.symetrique; 
    cout << "SYM = "<< SYM << endl;
    // SYMETRIQUE
    if( SYM == 1 ){
      iparm[IPARM_SYM] = API_SYM_YES;
      //iparm[IPARM_FACTORIZATION] = API_FACT_LDLT;
    }
    if( SYM == 0 ){
      iparm[IPARM_SYM] = API_SYM_NO;
      //iparm[IPARM_FACTORIZATION] = API_FACT_LU;
    }
    
    /* Scotch */
    fprintf(stdout,"-- Scotch --\n");
    fflush(stdout);
    iparm[IPARM_START_TASK] = API_TASK_ORDERING;
    iparm[IPARM_END_TASK]   = API_TASK_ORDERING; 
    pastix(&pastix_data, MPI_COMM_WORLD, Ncol,ia,ja,avals,perm,invp,rhs,1,iparm,dparm);
    
    /* Fax */
    fprintf(stdout,"-- Fax --\n");
    iparm[IPARM_START_TASK] = API_TASK_SYMBFACT;
    iparm[IPARM_END_TASK]   = API_TASK_SYMBFACT;
    pastix(&pastix_data, MPI_COMM_WORLD, Ncol,ia,ja,avals,perm,invp,rhs,1,iparm,dparm);
    
    /* Blend */
    fprintf(stdout,"-- Blend --\n");
    iparm[IPARM_START_TASK] = API_TASK_ANALYSE;
    iparm[IPARM_END_TASK]   = API_TASK_ANALYSE;
    pastix(&pastix_data, MPI_COMM_WORLD, Ncol,ia,ja,avals,perm,invp,rhs,1,iparm,dparm);
    
    if( SYM == 1 ){
      //iparm[IPARM_SYM] = API_SYM_YES;
      iparm[IPARM_FACTORIZATION] = API_FACT_LDLT;
    }
    if( SYM == 0 ){
      //iparm[IPARM_SYM] = API_SYM_NO;
      iparm[IPARM_FACTORIZATION] = API_FACT_LU;
    }

    /* Factorisation */
    iparm[IPARM_START_TASK] = API_TASK_NUMFACT;
    iparm[IPARM_END_TASK]   = API_TASK_NUMFACT;
    gettimeofday(&tv1, NULL);
    fprintf(stdout,"-- SOPALIN --\n");
    pastix(&pastix_data, MPI_COMM_WORLD, Ncol,ia,ja,avals,perm,invp,rhs,1,iparm,dparm);
    gettimeofday(&tv2, NULL);
    fprintf(stdout,"Time to call factorization : %ld usec\n", 
	    (long)((tv2.tv_sec  - tv1.tv_sec ) * 1000000 + 
		   tv2.tv_usec - tv1.tv_usec));
    
  
    
    for(int ii=0; ii < Ncol+1; ii++)
      ia[ii] = ia[ii]-1;
    for(int ii=0; ii < ia[Ncol]-1; ii++)
      ja[ii] = ja[ii]-1;
  }