//--------------------------------------------------------------------------
//-------- execute ---------------------------------------------------------
//--------------------------------------------------------------------------
void
ComputeHeatTransferElemWallAlgorithm::execute()
{
stk::mesh::BulkData & bulk_data = realm_.bulk_data();
stk::mesh::MetaData & meta_data = realm_.meta_data();
const int nDim = meta_data.spatial_dimension();
const double dt = realm_.get_time_step();
// nodal fields to gather
std::vector<double> ws_coordinates;
std::vector<double> ws_temperature;
std::vector<double> ws_thermalCond;
std::vector<double> ws_density;
std::vector<double> ws_specificHeat;
// master element
std::vector<double> ws_face_shape_function;
std::vector<double> ws_dndx;
std::vector<double> ws_det_j;
// array for face nodes and nodes off face
std::vector<double> ws_nodesOnFace;
std::vector<double> ws_nodesOffFace;
// define vector of parent topos; should always be UNITY in size
std::vector<stk::topology> parentTopo;
// define some common selectors
stk::mesh::Selector s_locally_owned_union = meta_data.locally_owned_part()
&stk::mesh::selectUnion(partVec_);
stk::mesh::BucketVector const& face_buckets =
realm_.get_buckets( meta_data.side_rank(), s_locally_owned_union );
for ( stk::mesh::BucketVector::const_iterator ib = face_buckets.begin();
ib != face_buckets.end() ; ++ib ) {
stk::mesh::Bucket & b = **ib ;
// extract connected element topology
b.parent_topology(stk::topology::ELEMENT_RANK, parentTopo);
ThrowAssert ( parentTopo.size() == 1 );
stk::topology theElemTopo = parentTopo[0];
MasterElement *meSCS = realm_.get_surface_master_element(theElemTopo);
const int nodesPerElement = meSCS->nodesPerElement_;
// face master element
MasterElement *meFC = realm_.get_surface_master_element(b.topology());
const int nodesPerFace = meFC->nodesPerElement_;
// size some things that are useful
int num_face_nodes = b.topology().num_nodes();
std::vector<int> face_node_ordinals(num_face_nodes);
// algorithm related; element
ws_coordinates.resize(nodesPerElement*nDim);
ws_temperature.resize(nodesPerElement);
ws_thermalCond.resize(nodesPerFace);
ws_density.resize(nodesPerFace);
ws_specificHeat.resize(nodesPerFace);
ws_face_shape_function.resize(nodesPerFace*nodesPerFace);
ws_dndx.resize(nDim*nodesPerFace*nodesPerElement);
ws_det_j.resize(nodesPerFace);
ws_nodesOnFace.resize(nodesPerElement);
ws_nodesOffFace.resize(nodesPerElement);
// pointers
double *p_coordinates = &ws_coordinates[0];
double *p_temperature = &ws_temperature[0];
double *p_thermalCond = &ws_thermalCond[0];
double *p_density = &ws_density[0];
double *p_specificHeat = &ws_specificHeat[0];
double *p_face_shape_function = &ws_face_shape_function[0];
double *p_dndx = &ws_dndx[0];
double *p_nodesOnFace = &ws_nodesOnFace[0];
double *p_nodesOffFace = &ws_nodesOffFace[0];
// shape function
meFC->shape_fcn(&p_face_shape_function[0]);
const stk::mesh::Bucket::size_type length = b.size();
for ( stk::mesh::Bucket::size_type k = 0 ; k < length ; ++k ) {
// get face
stk::mesh::Entity face = b[k];
// pointer to face data
const double * areaVec = stk::mesh::field_data(*exposedAreaVec_, b, k);
//======================================
// gather nodal data off of face
//======================================
stk::mesh::Entity const * face_node_rels = bulk_data.begin_nodes(face);
num_face_nodes = bulk_data.num_nodes(face);
// sanity check on num nodes
ThrowAssert( num_face_nodes == nodesPerFace );
for ( int ni = 0; ni < num_face_nodes; ++ni ) {
stk::mesh::Entity node = face_node_rels[ni];
// gather scalars
p_density[ni] = *stk::mesh::field_data(*density_, node);
const double mu = *stk::mesh::field_data(*viscosity_, node);
const double Cp = *stk::mesh::field_data(*specificHeat_, node);
p_specificHeat[ni] = Cp;
p_thermalCond[ni] = mu*Cp/Pr_;
}
// extract the connected element to this exposed face; should be single in size!
stk::mesh::Entity const * face_elem_rels = b.begin_elements(k);
ThrowAssert( b.num_elements(k) == 1 );
// get element; its face ordinal number and populate face_node_ordinals
stk::mesh::Entity element = face_elem_rels[0];
const int face_ordinal = b.begin_element_ordinals(k)[0];
theElemTopo.side_node_ordinals(face_ordinal, face_node_ordinals.begin());
//==========================================
// gather nodal data off of element
//==========================================
stk::mesh::Entity const * elem_node_rels = bulk_data.begin_nodes(element);
int num_nodes = bulk_data.num_nodes(element);
// sanity check on num nodes
ThrowAssert( num_nodes == nodesPerElement );
for ( int ni = 0; ni < num_nodes; ++ni ) {
// sneak in nodesOn/offFace
p_nodesOnFace[ni] = 0.0;
p_nodesOffFace[ni] = 1.0;
stk::mesh::Entity node = elem_node_rels[ni];
// gather scalars
p_temperature[ni] = *stk::mesh::field_data(*temperature_, node);
// gather vectors
double * coords = stk::mesh::field_data(*coordinates_, node);
const int offSet = ni*nDim;
for ( int j=0; j < nDim; ++j ) {
p_coordinates[offSet+j] = coords[j];
}
}
// process on/off while looping over face nodes
for ( int ip = 0; ip < num_face_nodes; ++ip ) {
const int nearestNode = face_node_ordinals[ip];
p_nodesOnFace[nearestNode] = 1.0;
p_nodesOffFace[nearestNode] = 0.0;
}
// compute dndx
double scs_error = 0.0;
meSCS->face_grad_op(1, face_ordinal, &p_coordinates[0], &p_dndx[0], &ws_det_j[0], &scs_error);
for ( int ip = 0; ip < num_face_nodes; ++ip ) {
const int nearestNode = face_node_ordinals[ip];
stk::mesh::Entity nodeR = elem_node_rels[nearestNode];
// pointers to nearest node data
double *assembledWallArea = stk::mesh::field_data(*assembledWallArea_, nodeR);
double *referenceTemperature = stk::mesh::field_data(*referenceTemperature_, nodeR);
double *heatTransferCoefficient = stk::mesh::field_data(*heatTransferCoefficient_, nodeR);
double *normalHeatFlux = stk::mesh::field_data(*normalHeatFlux_, nodeR);
double *robinCouplingParameter = stk::mesh::field_data(*robinCouplingParameter_, nodeR);
// offset for bip area vector and types of shape function
const int faceOffSet = ip*nDim;
const int offSetSF_face = ip*nodesPerFace;
// interpolate to bip
double thermalCondBip = 0.0;
double densityBip = 0.0;
double specificHeatBip = 0.0;
for ( int ic = 0; ic < nodesPerFace; ++ic ) {
const double r = p_face_shape_function[offSetSF_face+ic];
thermalCondBip += r*p_thermalCond[ic];
densityBip += r*p_density[ic];
specificHeatBip += r*p_specificHeat[ic];
}
// handle flux due to on and off face in a single loop (on/off provided above)
double dndx = 0.0;
double dndxOn = 0.0;
double dndxOff = 0.0;
double invEltLen = 0.0;
for ( int ic = 0; ic < nodesPerElement; ++ic ) {
const int offSetDnDx = nDim*nodesPerElement*ip + ic*nDim;
const double nodesOnFace = p_nodesOnFace[ic];
const double nodesOffFace = p_nodesOffFace[ic];
const double tempIC = p_temperature[ic];
for ( int j = 0; j < nDim; ++j ) {
const double axj = areaVec[faceOffSet+j];
const double dndxj = p_dndx[offSetDnDx+j];
const double dTdA = dndxj*axj*tempIC;
dndx += dTdA;
dndxOn += dTdA*nodesOnFace;
dndxOff += dTdA*nodesOffFace;
invEltLen += dndxj*axj*nodesOnFace;
}
}
// compute assembled area
double aMag = 0.0;
for ( int j = 0; j < nDim; ++j ) {
const double axj = areaVec[faceOffSet+j];
aMag += axj*axj;
}
aMag = std::sqrt(aMag);
double eltLen = aMag/invEltLen;
// compute coupling parameter
const double chi = densityBip * specificHeatBip * eltLen * eltLen
/ (2 * thermalCondBip * dt);
const double alpha = compute_coupling_parameter(thermalCondBip, eltLen, chi);
// assemble the nodal quantities
*assembledWallArea += aMag;
*normalHeatFlux -= thermalCondBip*dndx;
*referenceTemperature -= thermalCondBip*dndxOff;
*heatTransferCoefficient -= thermalCondBip*dndxOn;
*robinCouplingParameter += alpha*aMag;
}
}
}
}
//--------------------------------------------------------------------------
//-------- execute ---------------------------------------------------------
//--------------------------------------------------------------------------
void
AssembleMomentumElemSymmetrySolverAlgorithm::execute()
{
stk::mesh::BulkData & bulk_data = realm_.bulk_data();
stk::mesh::MetaData & meta_data = realm_.meta_data();
const int nDim = meta_data.spatial_dimension();
// space for LHS/RHS; nodesPerElem*nDim*nodesPerElem*nDim and nodesPerElem*nDim
std::vector<double> lhs;
std::vector<double> rhs;
std::vector<int> scratchIds;
std::vector<double> scratchVals;
std::vector<stk::mesh::Entity> connected_nodes;
// vectors
std::vector<double> nx(nDim);
// pointers to fixed values
double *p_nx = &nx[0];
// nodal fields to gather
std::vector<double> ws_velocityNp1;
std::vector<double> ws_coordinates;
std::vector<double> ws_viscosity;
// master element
std::vector<double> ws_face_shape_function;
std::vector<double> ws_dndx;
std::vector<double> ws_det_j;
// deal with state
VectorFieldType &velocityNp1 = velocity_->field_of_state(stk::mesh::StateNP1);
// define vector of parent topos; should always be UNITY in size
std::vector<stk::topology> parentTopo;
// define some common selectors
stk::mesh::Selector s_locally_owned_union = meta_data.locally_owned_part()
&stk::mesh::selectUnion(partVec_);
stk::mesh::BucketVector const& face_buckets =
realm_.get_buckets( meta_data.side_rank(), s_locally_owned_union );
for ( stk::mesh::BucketVector::const_iterator ib = face_buckets.begin();
ib != face_buckets.end() ; ++ib ) {
stk::mesh::Bucket & b = **ib ;
// extract connected element topology
b.parent_topology(stk::topology::ELEMENT_RANK, parentTopo);
ThrowAssert ( parentTopo.size() == 1 );
stk::topology theElemTopo = parentTopo[0];
// volume master element
MasterElement *meSCS = realm_.get_surface_master_element(theElemTopo);
const int nodesPerElement = meSCS->nodesPerElement_;
// face master element
MasterElement *meFC = realm_.get_surface_master_element(b.topology());
const int nodesPerFace = meFC->nodesPerElement_;
const int numScsBip = meFC->numIntPoints_;
// resize some things; matrix related
const int lhsSize = nodesPerElement*nDim*nodesPerElement*nDim;
const int rhsSize = nodesPerElement*nDim;
lhs.resize(lhsSize);
rhs.resize(rhsSize);
scratchIds.resize(rhsSize);
scratchVals.resize(rhsSize);
connected_nodes.resize(nodesPerElement);
// algorithm related; element
ws_velocityNp1.resize(nodesPerElement*nDim);
ws_coordinates.resize(nodesPerElement*nDim);
ws_viscosity.resize(nodesPerFace);
ws_face_shape_function.resize(numScsBip*nodesPerFace);
ws_dndx.resize(nDim*numScsBip*nodesPerElement);
ws_det_j.resize(numScsBip);
// pointers
double *p_lhs = &lhs[0];
double *p_rhs = &rhs[0];
double *p_velocityNp1 = &ws_velocityNp1[0];
double *p_coordinates = &ws_coordinates[0];
double *p_viscosity = &ws_viscosity[0];
double *p_face_shape_function = &ws_face_shape_function[0];
double *p_dndx = &ws_dndx[0];
// shape function
meFC->shape_fcn(&p_face_shape_function[0]);
const stk::mesh::Bucket::size_type length = b.size();
for ( stk::mesh::Bucket::size_type k = 0 ; k < length ; ++k ) {
// zero lhs/rhs
for ( int p = 0; p < lhsSize; ++p )
p_lhs[p] = 0.0;
for ( int p = 0; p < rhsSize; ++p )
p_rhs[p] = 0.0;
// get face
stk::mesh::Entity face = b[k];
//======================================
// gather nodal data off of face
//======================================
stk::mesh::Entity const * face_node_rels = bulk_data.begin_nodes(face);
int num_face_nodes = bulk_data.num_nodes(face);
// sanity check on num nodes
ThrowAssert( num_face_nodes == nodesPerFace );
for ( int ni = 0; ni < num_face_nodes; ++ni ) {
stk::mesh::Entity node = face_node_rels[ni];
// gather scalars
p_viscosity[ni] = *stk::mesh::field_data(*viscosity_, node);
}
// pointer to face data
const double * areaVec = stk::mesh::field_data(*exposedAreaVec_, face);
// extract the connected element to this exposed face; should be single in size!
stk::mesh::Entity const * face_elem_rels = bulk_data.begin_elements(face);
ThrowAssert( bulk_data.num_elements(face) == 1 );
// get element; its face ordinal number
stk::mesh::Entity element = face_elem_rels[0];
const stk::mesh::ConnectivityOrdinal* face_elem_ords = bulk_data.begin_element_ordinals(face);
const int face_ordinal = face_elem_ords[0];
// mapping from ip to nodes for this ordinal
const int *ipNodeMap = meSCS->ipNodeMap(face_ordinal);
//==========================================
// gather nodal data off of element
//==========================================
stk::mesh::Entity const * elem_node_rels = bulk_data.begin_nodes(element);
int num_nodes = bulk_data.num_nodes(element);
// sanity check on num nodes
ThrowAssert( num_nodes == nodesPerElement );
for ( int ni = 0; ni < num_nodes; ++ni ) {
stk::mesh::Entity node = elem_node_rels[ni];
// set connected nodes
connected_nodes[ni] = node;
// gather vectors
double * uNp1 = stk::mesh::field_data(velocityNp1, node);
double * coords = stk::mesh::field_data(*coordinates_, node);
const int offSet = ni*nDim;
for ( int j=0; j < nDim; ++j ) {
p_velocityNp1[offSet+j] = uNp1[j];
p_coordinates[offSet+j] = coords[j];
}
}
// compute dndx
double scs_error = 0.0;
meSCS->face_grad_op(1, face_ordinal, &p_coordinates[0], &p_dndx[0], &ws_det_j[0], &scs_error);
// loop over boundary ips
for ( int ip = 0; ip < numScsBip; ++ip ) {
const int nearestNode = ipNodeMap[ip];
// offset for bip area vector and types of shape function
const int faceOffSet = ip*nDim;
const int offSetSF_face = ip*nodesPerFace;
// form unit normal
double asq = 0.0;
for ( int j = 0; j < nDim; ++j ) {
const double axj = areaVec[faceOffSet+j];
asq += axj*axj;
}
const double amag = std::sqrt(asq);
for ( int i = 0; i < nDim; ++i ) {
p_nx[i] = areaVec[faceOffSet+i]/amag;
}
// interpolate to bip
double viscBip = 0.0;
for ( int ic = 0; ic < nodesPerFace; ++ic ) {
const double r = p_face_shape_function[offSetSF_face+ic];
viscBip += r*p_viscosity[ic];
}
//================================
// diffusion second
//================================
for ( int ic = 0; ic < nodesPerElement; ++ic ) {
const int offSetDnDx = nDim*nodesPerElement*ip + ic*nDim;
for ( int j = 0; j < nDim; ++j ) {
const double axj = areaVec[faceOffSet+j];
const double dndxj = p_dndx[offSetDnDx+j];
const double uxj = p_velocityNp1[ic*nDim+j];
const double divUstress = 2.0/3.0*viscBip*dndxj*uxj*axj*includeDivU_;
for ( int i = 0; i < nDim; ++i ) {
// matrix entries
int indexR = nearestNode*nDim + i;
int rowR = indexR*nodesPerElement*nDim;
const double dndxi = p_dndx[offSetDnDx+i];
const double uxi = p_velocityNp1[ic*nDim+i];
const double nxi = p_nx[i];
const double nxinxi = nxi*nxi;
// -mu*dui/dxj*Aj*ni*ni; sneak in divU (explicit)
double lhsfac = - viscBip*dndxj*axj*nxinxi;
p_lhs[rowR+ic*nDim+i] += lhsfac;
p_rhs[indexR] -= lhsfac*uxi + divUstress*nxinxi;
// -mu*duj/dxi*Aj*ni*ni
lhsfac = - viscBip*dndxi*axj*nxinxi;
p_lhs[rowR+ic*nDim+j] += lhsfac;
p_rhs[indexR] -= lhsfac*uxj;
// now we need the +nx*ny*Fy + nx*nz*Fz part
for ( int l = 0; l < nDim; ++l ) {
if ( i != l ) {
const double nxinxl = nxi*p_nx[l];
const double uxl = p_velocityNp1[ic*nDim+l];
const double dndxl = p_dndx[offSetDnDx+l];
// -ni*nl*mu*dul/dxj*Aj; sneak in divU (explict)
lhsfac = -viscBip*dndxj*axj*nxinxl;
p_lhs[rowR+ic*nDim+l] += lhsfac;
p_rhs[indexR] -= lhsfac*uxl + divUstress*nxinxl;
// -ni*nl*mu*duj/dxl*Aj
lhsfac = -viscBip*dndxl*axj*nxinxl;
p_lhs[rowR+ic*nDim+j] += lhsfac;
p_rhs[indexR] -= lhsfac*uxj;
}
}
}
}
}
}
apply_coeff(connected_nodes, scratchIds, scratchVals, rhs, lhs, __FILE__);
}
}
}
