void DnaAssemblySupport::sl_showDnaAssemblyDialog()
{
DnaAssemblyAlgRegistry* registry = AppContext::getDnaAssemblyAlgRegistry();
if (registry->getRegisteredAlgorithmIds().isEmpty()) {
QMessageBox::information(QApplication::activeWindow(), tr("DNA Assembly"),
tr("There are no algorithms for DNA assembly available.\nPlease, check your plugin list.") );
return;
}
QObjectScopedPointer<DnaAssemblyDialog> dlg = new DnaAssemblyDialog(QApplication::activeWindow());
dlg->exec();
CHECK(!dlg.isNull(), );
if (QDialog::Accepted == dlg->result()) {
DnaAssemblyToRefTaskSettings s;
s.samOutput = dlg->isSamOutput();
s.refSeqUrl = dlg->getRefSeqUrl();
s.algName = dlg->getAlgorithmName();
s.resultFileName = dlg->getResultFileName();
s.setCustomSettings(dlg->getCustomSettings());
s.shortReadSets = dlg->getShortReadSets();
s.pairedReads = dlg->isPaired();
s.openView = true;
s.prebuiltIndex = dlg->isPrebuiltIndex();
Task* assemblyTask = new DnaAssemblyTaskWithConversions(s, true);
AppContext::getTaskScheduler()->registerTopLevelTask(assemblyTask);
}
}
void DnaAssemblySupport::sl_showGenomeAssemblyDialog() {
GenomeAssemblyAlgRegistry* registry = AppContext::getGenomeAssemblyAlgRegistry();
if (registry->getRegisteredAlgorithmIds().isEmpty()) {
QMessageBox::information(QApplication::activeWindow(), tr("Genome Assembly"),
tr("There are no algorithms for genome assembly available.\nPlease, check external tools in the settings.") );
return;
}
QObjectScopedPointer<GenomeAssemblyDialog> dlg = new GenomeAssemblyDialog(QApplication::activeWindow());
dlg->exec();
CHECK(!dlg.isNull(), );
if (QDialog::Accepted == dlg->result()) {
GenomeAssemblyTaskSettings s;
s.algName = dlg->getAlgorithmName();
s.outDir = dlg->getOutDir();
s.setCustomSettings(dlg->getCustomSettings());
s.reads = dlg->getReads();
s.openView = true;
Task* assemblyTask = new GenomeAssemblyMultiTask(s);
AppContext::getTaskScheduler()->registerTopLevelTask(assemblyTask);
}
}