Location::Location( std::string const& locationString )
{
bool lastCharWasNonRangeChar = true;
vector<string> rawRangeList;
vector<string>::iterator iterRawRange;
for ( auto const& character : locationString ) {
if ( charSet_.find(character) != charSet_.end() ) {
if ( lastCharWasNonRangeChar ) {
rawRangeList.push_back("");
iterRawRange = rawRangeList.end()-1;
lastCharWasNonRangeChar = false;
}
*iterRawRange += character;
}
else lastCharWasNonRangeChar = true;
}
typedef boost::tokenizer<boost::char_separator<char> > tokenizer;
string firstString,secondString;
for ( auto const& rawRange : rawRangeList )
{
RangeType range;
boost::char_separator<char> sep(".");
tokenizer token(rawRange,sep);
tokenizer::const_iterator iterToken = token.begin();
if ( iterToken == token.end() )
throw GeneHunterException("Location: error reading " + locationString);
firstString = *iterToken;
++iterToken;
// Single base location
if ( iterToken == token.end() )
secondString = firstString;
else {
secondString = *iterToken;
++iterToken;
}
if ( iterToken != token.end() )
throw GeneHunterException("Location: error reading " + locationString);
if ( firstString[0] == '<' ) {
range.setOpenLowerBoundary(true);
firstString.erase(0,1);
}
range.setLowerBoundary(firstString);
if ( secondString[0] == '>' ) {
range.setOpenUpperBoundary(true);
secondString.erase(0,1);
}
range.setUpperBoundary(secondString);
rangeSet_.insert(range);
}
}
