void frameViewer(char* arg) {
//Take the arguments and save them into respective strings
std::string infileName;
std::string inF;
std::string inPrefix;
std::string runs, layers;
std::string runCount;
std::istringstream stm(arg);
inPrefix = "/home/p180f/Do_Jo_Ol_Ma/Analysis/MainProcedure/testMain/rawRoot/";
while (true) {
if (std::getline(stm, layers, ' ')) {
//load the input root files
TChain *chain = new TChain("fourChamTree");
for (int i=0; ; i++) {
runCount = std::to_string(i);
inF = "run" + runCount + "_" + layers + "layers.root";
infileName = inPrefix + inF;
ifstream fin;
fin.open(infileName.c_str());
if (!fin.fail()) {
fin.close();
chain->Add(infileName.c_str());
std::cout << "Got " << inF << std::endl;
} else break;
}
const int width=480; //width of the raw image
const int height=640; //height of the raw image
int x=-10; //x from file
int y=-10; //y from file
int intensity=-10; //pixle intensity from file
int pNum=0;//a counter of the order in which the frame was processed
//the 2d array which will store each frame of image data.
int frame[480][640]={0};
//variables
int UNIXtime=0;
float tdc[2]={-10,-10};
//TTree *T = new TTree("T","TTree of muplus data");
//add the 'branches' to the tree we will now read in
chain->SetBranchAddress("pNum",&pNum); //branch for the frame number
chain->SetBranchAddress("frame",&frame); //branch for frame data
TH2I *frameHisto = new TH2I("Single 4 Spark Event","",width,0,width,height,0,height); //histogram for the stacked images
TH1I *chamber1 = new TH1I("chamber1","Chamber 1",width,0,width);//histogram for chamber 1 (the top one)
TH1I *chamber2 = new TH1I("chamber2","Chamber 2",width,0,width);//histogram for chamber 2
TH1I *chamber3 = new TH1I("chamber3","Chamber 3",width,0,width);//histogram for chamber 3
TH1I *chamber4 = new TH1I("chamber4","Chamber 4",width,0,width);//histogram for chamber 4 (the bottom one)
TH1I *chamber1y = new TH1I("chamber1y","Chamber 1",height,0,height);//histogram for chamber 1 (the top one)
TH1I *chamber2y = new TH1I("chamber2y","Chamber 2",height,0,height);//histogram for chamber 2
TH1I *chamber3y = new TH1I("chamber3y","Chamber 3",height,0,height);//histogram for chamber 3
TH1I *chamber4y = new TH1I("chamber4y","Chamber 4",height,0,height);//histogram for chamber 4 (the bottom one)
//output the plot of the stacked images
TCanvas *fH2 = new TCanvas("fH2", "Single 4 Spark Event", 0, 0, 800, 800);
fH2->cd();
frameHisto->Draw();
frameHisto->GetXaxis()->SetTitle("X position (px)");
frameHisto->GetXaxis()->CenterTitle();
frameHisto->GetYaxis()->SetTitle("Intensity");
frameHisto->GetYaxis()->SetTitleOffset(1.4);
frameHisto->GetYaxis()->CenterTitle();
TCanvas *pc2 = new TCanvas("pc2","Frame",0,0,800,800);
pc2->Divide(2,2);
pc2->cd(1);
chamber1->Draw();
chamber1->GetXaxis()->SetTitle("X position (px)");
chamber1->GetXaxis()->CenterTitle();
chamber1->GetYaxis()->SetTitle("Intensity");
chamber1->GetYaxis()->SetTitleOffset(1.4);
chamber1->GetYaxis()->CenterTitle();
pc2->cd(2);
chamber2->Draw();
chamber2->GetXaxis()->SetTitle("X position (px)");
chamber2->GetXaxis()->CenterTitle();
chamber2->GetYaxis()->SetTitle("Intensity");
chamber2->GetYaxis()->SetTitleOffset(1.4);
chamber2->GetYaxis()->CenterTitle();
pc2->cd(3);
chamber3->Draw();
chamber3->GetXaxis()->SetTitle("X position (px)");
chamber3->GetXaxis()->CenterTitle();
chamber3->GetYaxis()->SetTitle("Intensity");
chamber3->GetYaxis()->SetTitleOffset(1.4);
chamber3->GetYaxis()->CenterTitle();
pc2->cd(4);
chamber4->Draw();
chamber4->GetXaxis()->SetTitle("X position (px)");
chamber4->GetXaxis()->CenterTitle();
chamber4->GetYaxis()->SetTitle("Intensity");
chamber4->GetYaxis()->SetTitleOffset(1.4);
chamber4->GetYaxis()->CenterTitle();
//TFile myF("trackTree.root","RECREATE");
//loop over all data in chain
Int_t nevent = chain->GetEntries(); //get the number of entries in the TChain
for (Int_t i=0;i<nevent;i++) {
chain->GetEntry(i);
//put the frame data into the histogram for this event
for(int x=0;x<width;x++){
for(int y=0;y<height;y++){
if(frame[x][y]>0){
frameHisto->Fill(x,y,frame[x][y]);
if(y>580 && y<610){
chamber1->Fill(x,frame[x][y]);
chamber1y->Fill(y,frame[x][y]);
}
else if(y>400 && y<440){
chamber2->Fill(x,frame[x][y]);
chamber2y->Fill(y,frame[x][y]);
}
else if(y>240 && y<280){
chamber3->Fill(x,frame[x][y]);
chamber3y->Fill(y,frame[x][y]);
}
else if(y>50 && y<100){
chamber4->Fill(x,frame[x][y]);
chamber4y->Fill(y,frame[x][y]);
}
}
}
}
double x12[2];
double y12[2];
double x34[2];
double y34[2];
x12[0] = chamber1->GetMean();
y12[0] = chamber1y->GetMean(); //593.3;
x12[1] = chamber2->GetMean();
y12[1] = chamber2y->GetMean(); //424.7;
x34[0] = chamber3->GetMean();
y34[0] = chamber3y->GetMean(); //262.5;
x34[1] = chamber4->GetMean();
y34[1] = chamber4y->GetMean(); //69.33;
cout << "Chamber1x: " << chamber1->GetMean() << endl;
cout << "Chamber1y: " << chamber1y->GetMean() << endl;
cout << "Chamber2x: " << chamber2->GetMean() << endl;
cout << "Chamber2y: " << chamber2y->GetMean() << endl;
cout << "Chamber3x: " << chamber3->GetMean() << endl;
cout << "Chamber3y: " << chamber3y->GetMean() << endl;
cout << "Chamber4x: " << chamber4->GetMean() << endl;
cout << "Chamber4y: " << chamber4y->GetMean() << endl;
pc2->cd(1);
chamber1->Draw();
gPad->Update();
pc2->cd(2);
chamber2->Draw();
gPad->Update();
pc2->cd(3);
chamber3->Draw();
gPad->Update();
pc2->cd(4);
chamber4->Draw();
gPad->Update();
fH2->cd();
frameHisto->Draw();
gPad->Update();
//wait for user input to advance to next event
cout << "Frame Number=" << pNum<<endl;
cout << "Press enter to advance to the next frame" << endl;
cin.ignore();
//clear the old frame from the histogram
frameHisto->Reset();
chamber1->Reset();
chamber2->Reset();
chamber3->Reset();
chamber4->Reset();
}
} else break;
}
}
void CsIProj()
{
TFile *file = new TFile("../root/NZ_55_New.root");
TFile *gates = new TFile("../gates/zlines.root");
TFile *gates2 = new TFile("../gates/zlines_new.root");
ofstream ofile("CsI_55A_New.dat");
TCanvas *mycan = (TCanvas*)gROOT->FindObjectAny("mycan");
if(!mycan)
{
mycan = new TCanvas("mycan","mycan");
mycan->Divide(1,2);
}
ostringstream outstring;
string name;
int p1= 30, p2=50; //+- fit limits up to 2 peaks. May be different.
int const num_par = 5; //number of peaks times 2(pol1)+3(gaus).
for(int ic =0;ic<56;ic++)
{
outstring.str("");
outstring << "dEE/dEE_" << ic;
name = outstring.str();
mycan->cd(1);
TH2I *hist = (TH2I*)file->Get(name.c_str());
hist->Draw("col");
hist->GetXaxis()->SetRangeUser(200.,1800.);
hist->GetYaxis()->SetRangeUser(5.,50.);
if(ic <16 || ic > 31)
TCutG *mycut = (TCutG*)gates->Get(Form("Zline_%i_2_4",ic));
else
TCutG *mycut = (TCutG*)gates2->Get(Form("Zline_%i_2_4",ic));
mycut->Draw();
file->cd();
outstring.str("");
outstring << "CsI/CsIGate/ECsI_" << ic << "_Gate";
name = outstring.str();
gPad->SetLogz();
mycan->cd(2);
TH1I * proj = (TH1I*)file->Get(name.c_str());
proj->Draw();
proj->Rebin(4);
proj->GetXaxis()->SetRangeUser(700.,1800.);
mycan->Modified();
mycan->Update();
TMarker * mark;
mark=(TMarker*)mycan->WaitPrimitive("TMarker"); //Get the Background limits
int bkg_lo = mark->GetX();
delete mark;
mark=(TMarker*)mycan->WaitPrimitive("TMarker");
int bkg_hi = mark->GetX();
delete mark;
mark=(TMarker*)mycan->WaitPrimitive("TMarker"); // Get the 1st peak initial guess
int peak1 = mark->GetX();
delete mark;
double par[num_par] = {0.};
double out[num_par] = {0.};
int peak1_lo = peak1 - p1, peak1_hi = peak1 + p1; // Peak center and limits
TF1 *l1 = new TF1("l1", "pol1", bkg_lo, bkg_hi);
TF1 *g1 = new TF1("g1", "gaus", peak1_lo,peak1_hi);
TF1 *total = new TF1("total", "pol1(0)+gaus(2)", bkg_lo,bkg_hi);
proj->Fit(l1,"R");
proj->Fit(g1,"R+");
l1->GetParameters(&par[0]);
g1->GetParameters(&par[2]);
total->SetParameters(par);
proj->Fit(total,"R");
total->GetParameters(out);
ofile << ic << " " << out[3] << endl;
outstring.str("");
outstring << "55A_" << ic;
name = outstring.str();
total->SetName(name.c_str());
total->Draw("same");
mycan->Modified();
mycan->Update();
bool IsGood = 0;
cout << "Good fit?" << endl;
cin >> IsGood;
if(IsGood)
{
ofile << ic << " " << out[3] << endl;
}
else
ofile << ic << " " << -1 << endl;
}
return;
}
int main (int argc, char** argv)
{
if (argc < 3) {
printHelp() ;
exit (1) ;
}
std::string inputfiles, inputdir ;
std::string outputRootName = "histoTPG.root" ;
int verbose = 0 ;
int occupancyCut = 0 ;
std::string l1algo ;
bool ok(false) ;
for (int i=0 ; i<argc ; i++) {
if (argv[i] == std::string("-h") ) {
printHelp() ;
exit(1);
}
if (argv[i] == std::string("-i") && argc>i+1) {
ok = true ;
inputfiles = argv[i+1] ;
}
if (argv[i] == std::string("-d") && argc>i+1) inputdir = argv[i+1] ;
if (argv[i] == std::string("-o") && argc>i+1) outputRootName = argv[i+1] ;
if (argv[i] == std::string("-v") && argc>i+1) verbose = atoi(argv[i+1]) ;
if (argv[i] == std::string("-l1") && argc>i+1) l1algo = std::string(argv[i+1]) ;
if (argv[i] == std::string("--cutTPOccup") && argc>i+1) occupancyCut = atoi(argv[i+1]) ;
}
if (!ok) {
std::cout<<"No input files have been given: nothing to do!"<<std::endl ;
printHelp() ;
exit(1);
}
std::vector<int> algobits ;
std::vector<std::string> algos = split(l1algo,",") ;
for (unsigned int i=0 ; i<algos.size() ; i++) algobits.push_back(atoi(algos[i].c_str())) ;
unsigned int ref = 2 ;
///////////////////////
// book the histograms
///////////////////////
TH2F * occupancyTP = new TH2F("occupancyTP", "Occupancy TP data", 72, 1, 73, 38, -19, 19) ;
occupancyTP->GetYaxis()->SetTitle("eta index") ;
occupancyTP->GetXaxis()->SetTitle("phi index") ;
TH2F * occupancyTPEmul = new TH2F("occupancyTPEmul", "Occupancy TP emulator", 72, 1, 73, 38, -19, 19) ;
occupancyTPEmul->GetYaxis()->SetTitle("eta index") ;
occupancyTPEmul->GetXaxis()->SetTitle("phi index") ;
TH1F * TP = new TH1F("TP", "TP", 256, 0., 256.) ;
TP->GetXaxis()->SetTitle("TP (ADC)") ;
TH1F * TPEmul = new TH1F("TPEmul", "TP Emulator", 256, 0., 256.) ;
TPEmul->GetXaxis()->SetTitle("TP (ADC)") ;
TH1F * TPEmulMax = new TH1F("TPEmulMax", "TP Emulator max", 256, 0., 256.) ;
TPEmulMax->GetXaxis()->SetTitle("TP (ADC)") ;
TH3F * TPspectrumMap3D = new TH3F("TPspectrumMap3D", "TP data spectrum map", 72, 1, 73, 38, -19, 19, 256, 0., 256.) ;
TPspectrumMap3D->GetYaxis()->SetTitle("eta index") ;
TPspectrumMap3D->GetXaxis()->SetTitle("phi index") ;
TH1F * TPMatchEmul = new TH1F("TPMatchEmul", "TP data matching Emulator", 7, -1., 6.) ;
TH1F * TPEmulMaxIndex = new TH1F("TPEmulMaxIndex", "Index of the max TP from Emulator", 7, -1., 6.) ;
TH3I * TPMatchEmul3D = new TH3I("TPMatchEmul3D", "TP data matching Emulator", 72, 1, 73, 38, -19, 19, 7, -1, 6) ;
TPMatchEmul3D->GetYaxis()->SetTitle("eta index") ;
TPMatchEmul3D->GetXaxis()->SetTitle("phi index") ;
TH2I * ttfMismatch = new TH2I("ttfMismatch", "TTF mismatch map", 72, 1, 73, 38, -19, 19) ;
ttfMismatch->GetYaxis()->SetTitle("eta index") ;
ttfMismatch->GetXaxis()->SetTitle("phi index") ;
///////////////////////
// Chain the trees:
///////////////////////
TChain * chain = new TChain ("EcalTPGAnalysis") ;
std::vector<std::string> files ;
if (inputfiles.find(std::string(",")) != std::string::npos) files = split(inputfiles,",") ;
if (inputfiles.find(std::string(":")) != std::string::npos) {
std::vector<std::string> filesbase = split(inputfiles,":") ;
if (filesbase.size() == 4) {
int first = atoi(filesbase[1].c_str()) ;
int last = atoi(filesbase[2].c_str()) ;
for (int i=first ; i<=last ; i++) {
std::stringstream name ;
name<<filesbase[0]<<i<<filesbase[3] ;
files.push_back(name.str()) ;
}
}
}
for (unsigned int i=0 ; i<files.size() ; i++) {
files[i] = inputdir+"/"+files[i] ;
std::cout<<"Input file: "<<files[i]<<std::endl ;
chain->Add (files[i].c_str()) ;
}
EcalTPGVariables treeVars ;
setBranchAddresses (chain, treeVars) ;
int nEntries = chain->GetEntries () ;
std::cout << "Number of entries: " << nEntries <<std::endl ;
///////////////////////
// Main loop over entries
///////////////////////
for (int entry = 0 ; entry < nEntries ; ++entry) {
chain->GetEntry (entry) ;
if (entry%1000==0) std::cout <<"------> "<< entry+1 <<" entries processed" << " <------\n" ;
if (verbose>0) std::cout<<"Run="<<treeVars.runNb<<" Evt="<<treeVars.runNb<<std::endl ;
// trigger selection if any
bool keep(false) ;
if (!algobits.size()) keep = true ; // keep all events when no trigger selection
for (unsigned int algo = 0 ; algo<algobits.size() ; algo++)
for (unsigned int ntrig = 0 ; ntrig < treeVars.nbOfActiveTriggers ; ntrig++)
if (algobits[algo] == treeVars.activeTriggers[ntrig]) keep = true ;
if (!keep) continue ;
// loop on towers
for (unsigned int tower = 0 ; tower < treeVars.nbOfTowers ; tower++) {
int tp = getEt(treeVars.rawTPData[tower]) ;
int emul[5] = {getEt(treeVars.rawTPEmul1[tower]),
getEt(treeVars.rawTPEmul2[tower]),
getEt(treeVars.rawTPEmul3[tower]),
getEt(treeVars.rawTPEmul4[tower]),
getEt(treeVars.rawTPEmul5[tower])} ;
int maxOfTPEmul = 0 ;
int indexOfTPEmulMax = -1 ;
for (int i=0 ; i<5 ; i++) if (emul[i]>maxOfTPEmul) {
maxOfTPEmul = emul[i] ;
indexOfTPEmulMax = i ;
}
int ieta = treeVars.ieta[tower] ;
int iphi = treeVars.iphi[tower] ;
int nbXtals = treeVars.nbOfXtals[tower] ;
int ttf = getTtf(treeVars.rawTPData[tower]) ;
if (verbose>9 && (tp>0 || maxOfTPEmul>0)) {
std::cout<<"(phi,eta, Nbxtals)="<<std::dec<<iphi<<" "<<ieta<<" "<<nbXtals<<std::endl ;
std::cout<<"Data Et, TTF: "<<tp<<" "<<ttf<<std::endl ;
std::cout<<"Emulator: " ;
for (int i=0 ; i<5 ; i++) std::cout<<emul[i]<<" " ;
std::cout<<std::endl ;
}
// Fill TP spctrum
TP->Fill(tp) ;
TPEmul->Fill(emul[ref]) ;
TPEmulMax->Fill(maxOfTPEmul) ;
TPspectrumMap3D->Fill(iphi, ieta, tp) ;
// Fill TP occupancy
if (tp>occupancyCut) occupancyTP->Fill(iphi, ieta) ;
if (emul[ref]>occupancyCut) occupancyTPEmul->Fill(iphi, ieta) ;
// Fill TP-Emulator matching
// comparison is meaningful when:
if (tp>0 && nbXtals == 25) {
bool match(false) ;
for (int i=0 ; i<5 ; i++) {
if (tp == emul[i]) {
TPMatchEmul->Fill(i+1) ;
TPMatchEmul3D->Fill(iphi, ieta, i+1) ;
match = true ;
}
}
if (!match) {
TPMatchEmul->Fill(-1) ;
TPMatchEmul3D->Fill(iphi, ieta, -1) ;
if (verbose>5) {
std::cout<<"MISMATCH"<<std::endl ;
std::cout<<"(phi,eta, Nbxtals)="<<std::dec<<iphi<<" "<<ieta<<" "<<nbXtals<<std::endl ;
std::cout<<"Data Et, TTF: "<<tp<<" "<<ttf<<std::endl ;
std::cout<<"Emulator: " ;
for (int i=0 ; i<5 ; i++) std::cout<<emul[i]<<" " ;
std::cout<<std::endl ;
}
}
}
if (maxOfTPEmul>0) TPEmulMaxIndex->Fill(indexOfTPEmulMax+1) ;
// Fill TTF mismatch
if ((ttf==1 || ttf==3) && nbXtals != 25) ttfMismatch->Fill(iphi, ieta) ;
} // end loop towers
} // endloop entries
///////////////////////
// Format & write histos
///////////////////////
// 1. TP Spectrum
TProfile2D * TPspectrumMap = TPspectrumMap3D->Project3DProfile("yx") ;
TPspectrumMap->SetName("TPspectrumMap") ;
// 2. TP Timing
TH2F * TPMatchEmul2D = new TH2F("TPMatchEmul2D", "TP data matching Emulator", 72, 1, 73, 38, -19, 19) ;
TH2F * TPMatchFraction2D = new TH2F("TPMatchFraction2D", "TP data: fraction of non-single timing", 72, 1, 73, 38, -19, 19) ;
TPMatchEmul2D->GetYaxis()->SetTitle("eta index") ;
TPMatchEmul2D->GetXaxis()->SetTitle("phi index") ;
TPMatchEmul2D->GetZaxis()->SetRangeUser(-1,6) ;
TPMatchFraction2D->GetYaxis()->SetTitle("eta index") ;
TPMatchFraction2D->GetXaxis()->SetTitle("phi index") ;
for (int binx=1 ; binx<=72 ; binx++)
for (int biny=1 ; biny<=38 ; biny++) {
int maxBinz = 5 ;
double maxCell = TPMatchEmul3D->GetBinContent(binx, biny, maxBinz) ;
double totalCell(0) ;
for (int binz=1; binz<=7 ; binz++) {
double content = TPMatchEmul3D->GetBinContent(binx, biny, binz) ;
if (content>maxCell) {
maxCell = content ;
maxBinz = binz ;
}
totalCell += content ;
}
if (maxCell <=0) maxBinz = 2 ; // empty cell
TPMatchEmul2D->SetBinContent(binx, biny, float(maxBinz)-2.) ; //z must be in [-1,5]
double fraction = 0 ;
if (totalCell>0) fraction = 1.- maxCell/totalCell ;
TPMatchFraction2D->SetBinContent(binx, biny, fraction) ;
if (totalCell > maxCell && verbose>9) {
std::cout<<"--->"<<std::endl ;
for (int binz=1; binz<=7 ; binz++) {
std::cout<< "(phi,eta, z): ("
<< TPMatchEmul3D->GetXaxis()->GetBinLowEdge(binx)
<< ", " << TPMatchEmul3D->GetYaxis()->GetBinLowEdge(biny)
<< ", " << TPMatchEmul3D->GetZaxis()->GetBinLowEdge(binz)
<< ") Content="<<TPMatchEmul3D->GetBinContent(binx, biny, binz)
<< ", erro="<<TPMatchEmul3D->GetBinContent(binx, biny, binz)
<< std::endl ;
}
}
}
TFile saving (outputRootName.c_str (),"recreate") ;
saving.cd () ;
occupancyTP->Write() ;
occupancyTPEmul->Write() ;
TP->Write() ;
TPEmul->Write() ;
TPEmulMax->Write() ;
TPspectrumMap->Write() ;
TPMatchEmul->Write() ;
TPMatchEmul3D->Write() ;
TPEmulMaxIndex->Write() ;
TPMatchEmul2D->Write() ;
TPMatchFraction2D->Write() ;
ttfMismatch->Write() ;
saving.Close () ;
delete chain ;
return 0 ;
}
int frameStack2_Mall(char* arg){
//Take the arguments and save them into respective strings
std::string infileName, outfileName0, outAllfileName0, outfileName1, outAllfileName1;
std::string inF, outF0, outF1, outAll0, outAll1;
std::string inPrefix, outPrefix;
std::string runs, layers;
std::string runCount;
std::istringstream stm(arg);
inPrefix = "/home/p180f/Do_Jo_Ol_Ma/Analysis/MainProcedure/testMain/rawRoot/";
outPrefix = "/home/p180f/Do_Jo_Ol_Ma/Analysis/MainProcedure/testMain/images/";
outAll0 = "sliceXCuts_allLayers.png";
outAllfileName0 = outPrefix + outAll0;
std::cout << outAll0 << " created\n";
outAll1 = "projYCuts_allLayers.png";
outAllfileName1 = outPrefix + outAll1;
std::cout << outAll1 << " created\n";
const int width=480; //width of the raw image
const int height=640; //height of the raw image
TH2I *frameHistoAll = new TH2I("frameHistoAll","Stacked Frames After Edge Cuts",width/4,0,width,height/4,0,height); //histogram for the stacked images
TH1I *chamber1All = new TH1I("chamber1All","Chamber 1 After Edge Cuts",width/4,0,width);//histogram for chamber 1 (the top one)
TH1I *chamber2All = new TH1I("chamber2All","Chamber 2 After Edge Cuts",width/4,0,width);//histogram for chamber 2
TH1I *chamber3All = new TH1I("chamber3All","Chamber 3 After Edge Cuts",width/4,0,width);//histogram for chamber 3
TH1I *chamber4All = new TH1I("chamber4All","Chamber 4 After Edge Cuts",width/4,0,width);//histogram for chamber 4 (the bottom one)
TCanvas *projCAll = new TCanvas("projCAll","",0,0,800,600);
TCanvas *pc2All = new TCanvas("pc2All", "Stack of 4 Layer Runs", 0, 0, 800, 600);
while (true) {
if (std::getline(stm, layers, ' ')) {
//create the output root file
outF0 = "sliceXCuts_" + layers + "layers.png";
outfileName0 = outPrefix + outF0;
std::cout << outF0 << " created\n";
outF1 = "projYCuts_" + layers + "layers.png";
outfileName1 = outPrefix + outF1;
std::cout << outF1 << " created\n";
//load the input root files
TChain *chain = new TChain("fourChamTree");
for (int i=0; ; i++) {
runCount = std::to_string(i);
inF = "run" + runCount + "_" + layers + "layers.root";
infileName = inPrefix + inF;
ifstream fin;
fin.open(infileName.c_str());
if (!fin.fail()) {
fin.close();
chain->Add(infileName.c_str());
std::cout << "Got " << inF << std::endl;
} else break;
}
int x=-10; //x from file
int y=-10; //y from file
int intensity=-10; //pixle intensity from file
int pNum=0;//the order in which the frame was processed
//the 2d array which will store each frame of image data.
int frame[480][640]={0};
//variables
int UNIXtime=0;
float tdc[2]={-10,-10};
//TTree *T = new TTree("T","TTree of muplus data");
//add the 'branches' to the tree we will now read in
chain->SetBranchAddress("pNum",&pNum); //branch for the frame number
chain->SetBranchAddress("frame",&frame); //branch for frame data
TH2I *frameHisto = new TH2I("frameHisto","Stacked Frames After Edge Cuts",width/4,0,width,height/4,0,height); //histogram for the stacked images
TH1I *chamber1 = new TH1I("chamber1","Chamber 1 After Edge Cuts",width/4,0,width);//histogram for chamber 1 (the top one)
TH1I *chamber2 = new TH1I("chamber2","Chamber 2 After Edge Cuts",width/4,0,width);//histogram for chamber 2
TH1I *chamber3 = new TH1I("chamber3","Chamber 3 After Edge Cuts",width/4,0,width);//histogram for chamber 3
TH1I *chamber4 = new TH1I("chamber4","Chamber 4 After Edge Cuts",width/4,0,width);//histogram for chamber 4 (the bottom one)
//loop over all data in chain
Int_t nevent = chain->GetEntries(); //get the number of entries in the TChain
for (Int_t i=0;i<nevent;i++) {
chain->GetEntry(i);
for(int x=0;x<width;x++){
for(int y=0;y<height;y++){
if(frame[x][y]>0){
frameHisto->Fill(x,y,frame[x][y]);
frameHistoAll->Fill(x,y,frame[x][y]);
if(y>580 && y<610){
chamber1->Fill(x,frame[x][y]);
chamber1All->Fill(x,frame[x][y]);
}
else if(y>400 && y<440){
chamber2->Fill(x,frame[x][y]);
chamber2All->Fill(x,frame[x][y]);
}
else if(y>240 && y<280){
chamber3->Fill(x,frame[x][y]);
chamber3All->Fill(x,frame[x][y]);
}
else if(y>50 && y<100){
chamber4->Fill(x,frame[x][y]);
chamber4All->Fill(x,frame[x][y]);
}
}
}
}
cout << "Stacking frame number " << pNum << "\r";//this overwrites the line every time
}
cout << endl;
//output the plot of the stacked images
TCanvas *pc2 = new TCanvas("pc2","Stacked Frames",0,0,600,800);
pc2->cd();
frameHisto->SetStats(false);
frameHisto->Draw("colz");
frameHisto->GetXaxis()->SetTitle("X position (px)");
//frameHisto->GetXaxis()->SetTitleSize(0.055);
//frameHisto->GetXaxis()->SetTitleOffset(1.0);
//frameHisto->GetXaxis()->SetLabelSize(0.055);
frameHisto->GetXaxis()->CenterTitle();
frameHisto->GetYaxis()->SetTitle("Y position (px)");
//frameHisto->GetYaxis()->SetTitleSize(0.055);
//frameHisto->GetYaxis()->SetTitleOffset(0.9);
//frameHisto->GetYaxis()->SetLabelSize(0.055);
frameHisto->GetYaxis()->CenterTitle();
gPad->Update();
// pc2->Print("chamberStack.png");//output to a graphics file
//plot the projection onto the Y axis (so we can find our cuts in Y to select each chamber)
TCanvas *projC = new TCanvas("projC","",0,0,800,600);
projC->cd();
TH1D *ydist = frameHisto->ProjectionY("ydist");
ydist->Draw();
ydist->GetYaxis()->SetTitle("Entries");
ydist->GetYaxis()->CenterTitle();
TCanvas *sliceX = new TCanvas("sliceX","",0,0,800,600);
sliceX->Divide(2,2);
sliceX->cd(1);
chamber1->Draw();
chamber1->GetXaxis()->SetTitle("X position (px)");
chamber1->GetXaxis()->CenterTitle();
chamber1->GetYaxis()->SetTitle("Y position (px)");
chamber1->GetYaxis()->CenterTitle();
// chamber1->GetYaxis()->SetMaxDigits(2);
sliceX->cd(2);
chamber2->Draw();
chamber2->GetXaxis()->SetTitle("X position (px)");
chamber2->GetXaxis()->CenterTitle();
chamber2->GetYaxis()->SetTitle("Y position (px)");
chamber2->GetYaxis()->CenterTitle();
// chamber2->GetYaxis()->SetMaxDigits(2);
sliceX->cd(3);
chamber3->Draw();
chamber3->GetXaxis()->SetTitle("X position (px)");
chamber3->GetXaxis()->CenterTitle();
chamber3->GetYaxis()->SetTitle("Y position (px)");
chamber3->GetYaxis()->CenterTitle();
// chamber3->GetYaxis()->SetMaxDigits(2);
sliceX->cd(4);
chamber4->Draw();
chamber4->GetXaxis()->SetTitle("X position (px)");
chamber4->GetXaxis()->CenterTitle();
chamber4->GetYaxis()->SetTitle("Y position (px)");
chamber4->GetYaxis()->CenterTitle();
// chamber4->GetYaxis()->SetMaxDigits(2);
gPad->Update();
projC->Print(outfileName1.c_str());
sliceX->Print(outfileName0.c_str());
frameHisto->Reset();
chamber1->Reset();
chamber2->Reset();
chamber3->Reset();
chamber4->Reset();
} else break;
}
projCAll->cd();
TH1D *ydistAll = frameHistoAll->ProjectionY("ydist");
ydistAll->Draw();
ydistAll->GetYaxis()->SetTitle("Entries");
ydistAll->GetYaxis()->CenterTitle();
TCanvas *sliceXAll = new TCanvas("sliceXAll","",0,0,800,600);
sliceXAll->Divide(2,2);
sliceXAll->cd(1);
chamber1All->Draw();
chamber1All->GetXaxis()->SetTitle("X position (px)");
chamber1All->GetXaxis()->CenterTitle();
chamber1All->GetYaxis()->SetTitle("Y position (px)");
chamber1All->GetYaxis()->CenterTitle();
// chamber1->GetYaxis()->SetMaxDigits(2);
sliceXAll->cd(2);
chamber2All->Draw();
chamber2All->GetXaxis()->SetTitle("X position (px)");
chamber2All->GetXaxis()->CenterTitle();
chamber2All->GetYaxis()->SetTitle("Y position (px)");
chamber2All->GetYaxis()->CenterTitle();
// chamber2->GetYaxis()->SetMaxDigits(2);
sliceXAll->cd(3);
chamber3All->Draw();
chamber3All->GetXaxis()->SetTitle("X position (px)");
chamber3All->GetXaxis()->CenterTitle();
chamber3All->GetYaxis()->SetTitle("Y position (px)");
chamber3All->GetYaxis()->CenterTitle();
// chamber3->GetYaxis()->SetMaxDigits(2);
sliceXAll->cd(4);
chamber4All->Draw();
chamber4All->GetXaxis()->SetTitle("X position (px)");
chamber4All->GetXaxis()->CenterTitle();
chamber4All->GetYaxis()->SetTitle("Y position (px)");
chamber4All->GetYaxis()->CenterTitle();
// chamber4->GetYaxis()->SetMaxDigits(2);
gPad->Update();
projCAll->Print(outAllfileName1.c_str());
sliceXAll->Print(outAllfileName0.c_str());
pc2All->cd();
frameHistoAll->SetStats(false);
frameHistoAll->Draw("colz");
frameHistoAll->GetXaxis()->SetTitle("X position (px)");
//frameHisto->GetXaxis()->SetTitleSize(0.055);
//frameHisto->GetXaxis()->SetTitleOffset(1.0);
//frameHisto->GetXaxis()->SetLabelSize(0.055);
frameHistoAll->GetXaxis()->CenterTitle();
frameHistoAll->GetYaxis()->SetTitle("Y position (px)");
//frameHisto->GetYaxis()->SetTitleSize(0.055);
//frameHisto->GetYaxis()->SetTitleOffset(0.9);
//frameHisto->GetYaxis()->SetLabelSize(0.055);
frameHistoAll->GetYaxis()->CenterTitle();
gPad->Update();
return 0;
}
void plot_pad_size_in_layer(TString digiPar="trd.v13/trd_v13g.digi.par", Int_t nlines=1, Int_t nrows_in_sec=0, Int_t alllayers=1)
{
gStyle->SetPalette(1,0);
gROOT->SetStyle("Plain");
gStyle->SetPadTickX(1);
gStyle->SetPadTickY(1);
gStyle->SetOptStat(kFALSE);
gStyle->SetOptTitle(kFALSE);
Bool_t read = false;
TH2I *fLayerDummy = new TH2I("LayerDummy","",1200,-600,600,1000,-500,500);
fLayerDummy->SetXTitle("x-coordinate [cm]");
fLayerDummy->SetYTitle("y-coordinate [cm]");
fLayerDummy->GetXaxis()->SetLabelSize(0.02);
fLayerDummy->GetYaxis()->SetLabelSize(0.02);
fLayerDummy->GetZaxis()->SetLabelSize(0.02);
fLayerDummy->GetXaxis()->SetTitleSize(0.02);
fLayerDummy->GetXaxis()->SetTitleOffset(1.5);
fLayerDummy->GetYaxis()->SetTitleSize(0.02);
fLayerDummy->GetYaxis()->SetTitleOffset(2);
fLayerDummy->GetZaxis()->SetTitleSize(0.02);
fLayerDummy->GetZaxis()->SetTitleOffset(-2);
TString title;
TString title1, title2, title3;
TString buffer;
TString firstModule = "";
Int_t blockCounter(0), startCounter(0); // , stopCounter(0);
Double_t msX(0), msY(0), mpX(0), mpY(0), mpZ(0), psX(0), psY(0);
Double_t ps1X(0), ps1Y(0), ps2X(0), ps2Y(0), ps3X(0), ps3Y(0);
Int_t modId(0), layerId(0);
Double_t sec1(0), sec2(0), sec3(0);
Double_t row1(0), row2(0), row3(0);
std::map<float, TCanvas*> layerView;// map key is z-position of modules
std::map<float, TCanvas*>::iterator it;
ifstream digipar;
digipar.open(digiPar.Data(), ifstream::in);
while (digipar.good()) {
digipar >> buffer;
//cout << "(" << blockCounter << ") " << buffer << endl;
if (blockCounter == 19)
firstModule = buffer;
if (buffer == (firstModule + ":")){
//cout << buffer << " <===========================================" << endl;
read = true;
}
if (read) {
startCounter++;
if (startCounter == 1) // position of module position in x
{
modId = buffer.Atoi();
layerId = (modId & (15 << 4)) >> 4; // from CbmTrdAddress.h
}
if (startCounter == 5) // position of module position in x
mpX = buffer.Atof();
if (startCounter == 6) // position of module position in y
mpY = buffer.Atof();
if (startCounter == 7) // position of module position in z
mpZ = buffer.Atof();
if (startCounter == 8) // position of module size in x
msX = buffer.Atof();
if (startCounter == 9) // position of module size in y
msY = buffer.Atof();
if (startCounter == 12) // sector 1 size in y
sec1 = buffer.Atof();
if (startCounter == 13) // position of pad size in x - do not take the backslash (@14)
ps1X = buffer.Atof();
if (startCounter == 15) // position of pad size in y
ps1Y = buffer.Atof();
if (startCounter == 17) // sector 2 size in y
sec2 = buffer.Atof();
if (startCounter == 18) // position of pad size in x
{
ps2X = buffer.Atof();
psX = ps2X; // for backwards compatibility - sector 2 is default sector
}
if (startCounter == 19) // position of pad size in y
{
ps2Y = buffer.Atof();
psY = ps2Y; // for backwards compatibility - sector 2 is default sector
}
if (startCounter == 21) // sector 3 size in y
sec3 = buffer.Atof();
if (startCounter == 22) // position of pad size in x
ps3X = buffer.Atof();
if (startCounter == 23) // position of pad size in y
ps3Y = buffer.Atof();
// if (startCounter == 23) // last element
// {
// printf("moduleId : %d, %d\n", modId, layerId);
// printf("pad size sector 1: (%.2f cm, %.2f cm) pad area: %.2f cm2\n", ps1X, ps1Y, ps1X*ps1Y);
// printf("pad size sector 2: (%.2f cm, %.2f cm) pad area: %.2f cm2\n", ps2X, ps2Y, ps2X*ps2Y);
// printf("pad size sector 3: (%.2f cm, %.2f cm) pad area: %.2f cm2\n", ps3X, ps3Y, ps3X*ps3Y);
// printf("rows per sector : %.1f %.1f %.1f\n", sec1/ps1Y, sec2/ps2Y, sec3/ps3Y);
// printf("\n");
// }
//printf("module position: (%.1f, %.1f, %.1f) module size: (%.1f, %.1f) pad size: (%.2f, %.2f) pad area: %.2f\n",mpX,mpY,mpZ,2*msX,2*msY,psX,psY,psX*psY);
if (startCounter == 23) { // if last element is reached
startCounter = 0; // reset
if ( alllayers == 0 )
if ( !((layerId == 0) || (layerId == 4) || (layerId == 8)) ) // plot only 1 layer per station
continue;
row1 = sec1 / ps1Y;
row2 = sec2 / ps2Y;
row3 = sec3 / ps3Y;
it = layerView.find(mpZ);
if (it == layerView.end()){
// title.Form("pad_size_layer_at_z_%.2fm",mpZ);
title.Form("%02d_pad_size_layer%02d", layerId, layerId);
layerView[mpZ] = new TCanvas(title,title,1200,1000);
fLayerDummy->DrawCopy("");
// now print cm2 in the center
layerView[mpZ]->cd();
title.Form("cm^{2}"); // print cm2
TPaveText *text = new TPaveText(0 - 28.5,
0 - 28.5,
0 + 28.5,
0 + 28.5
);
text->SetFillStyle(1001);
text->SetLineColor(1);
text->SetFillColor(kWhite);
text->AddText(title);
text->Draw("same");
}
// print pad size in each module
layerView[mpZ]->cd();
// title.Form("%2.0fcm^{2}",psX*psY); // print pad size
// title.Form("%.0f",psX*psY); // print pad size - 1 digit
TPaveText *text = new TPaveText(mpX - msX,
mpY - msY,
mpX + msX,
mpY + msY
);
text->SetFillStyle(1001);
text->SetLineColor(1);
// text->SetFillColor(kViolet);
// vary background color
// if ((int)(psX*psY+.5) == 2)
// {
// text->SetFillColor(kOrange + 9);
// }
// else
if (psX*psY <= 1.1)
{
text->SetFillColor(kOrange + 10);
}
else if (psX*psY <= 2.1)
{
text->SetFillColor(kOrange - 3);
}
else if (psX*psY <= 3.1)
{
text->SetFillColor(kOrange - 4);
}
else if (psX*psY <= 5)
{
text->SetFillColor(kOrange + 10 - ((int)(psX*psY+.5)-1) * 2);
// printf("%2.1f: %d\n", psX*psY, 10 - ((int)(psX*psY+.5)-1) * 2);
}
else if (psX*psY <= 10)
{
text->SetFillColor(kSpring + 10 - ((int)(psX*psY+.5)-4) * 2);
// printf("%2.1f: %d\n", psX*psY, 10 - ((int)(psX*psY+.5)-4) * 2);
}
else if (psX*psY > 10)
{
text->SetFillColor(kGreen);
// printf("%2.1f: %s\n", psX*psY, "green");
}
if (nrows_in_sec == 1) // print number of rows in sector
{
title1.Form("%3.1f - %2.0f", ps1X*ps1Y, row1); // print pad size and nrows - 2 digits - sector 1
title2.Form("%3.1f - %2.0f", ps2X*ps2Y, row2); // print pad size and nrows - 2 digits - sector 2
title3.Form("%3.1f - %2.0f", ps3X*ps3Y, row3); // print pad size and nrows - 2 digits - sector 3
}
else
{
title1.Form("%3.1f",ps1X*ps1Y); // print pad size - 2 digits - sector 1
title2.Form("%3.1f",ps2X*ps2Y); // print pad size - 2 digits - sector 2
title3.Form("%3.1f",ps3X*ps3Y); // print pad size - 2 digits - sector 3
}
if (nlines==1) // plot pad size for central sector only
{
text->AddText(title2);
}
else // plot pad size for all 3 sectors
{
text->AddText(title1);
text->AddText(title2);
text->AddText(title3);
}
text->Draw("same");
//layerView[mpZ]->Update();
}
}
blockCounter++;
}
// Do the extraction of the actual constants
void ExtractCDCDeformation(TString filename = "hd_root.root"){
// Open our input and output file
thisFile = TFile::Open(filename);
TFile *outputFile = TFile::Open("CDCDeformation_Results.root", "RECREATE");
// Check to make sure it is open
if (thisFile == 0) {
cout << "Unable to open file " << filename.Data() << "...Exiting" << endl;
return;
}
// This stream will be for outputting the results in a format suitable for the CCDB
// Will wait to open until needed
ofstream textFile;
textFile.open("CDC_Deformation.txt");
// We want to display the direction of the shift as well as the magnitude in the "CDC view"
// Let's make it happen
int straw_offset[29] = {0,0,42,84,138,192,258,324,404,484,577,670,776,882,1005,1128,1263,1398,1544,1690,1848,2006,2176,2346,2528,2710,2907,3104,3313};
int Nstraws[28] = {42, 42, 54, 54, 66, 66, 80, 80, 93, 93, 106, 106, 123, 123, 135, 135, 146, 146, 158, 158, 170, 170, 182, 182, 197, 197, 209, 209};
double radius[28] = {10.72134, 12.08024, 13.7795, 15.14602, 18.71726, 20.2438, 22.01672, 23.50008, 25.15616, 26.61158, 28.33624, 29.77388, 31.3817, 32.75838, 34.43478, 35.81146, 38.28542, 39.7002, 41.31564, 42.73042, 44.34078, 45.75302, 47.36084, 48.77054, 50.37582, 51.76012, 53.36286, 54.74716};
double phi[28] = {0, 0.074707844, 0.038166294, 0.096247609, 0.05966371, 0.012001551, 0.040721951, 0.001334527, 0.014963808, 0.048683644, 0.002092645, 0.031681749, 0.040719354, 0.015197341, 0.006786058, 0.030005892, 0.019704045, -0.001782064, -0.001306618, 0.018592421, 0.003686784, 0.022132975, 0.019600866, 0.002343723, 0.021301449, 0.005348855, 0.005997358, 0.021018761};
TH2D * Amplitude_view[29];
TH2D * Direction_view[29];
TH2D * Vertical_view[29];
TH2D * Horizontal_view[29];
outputFile->mkdir("PerRing");
outputFile->cd("PerRing");
for(unsigned int iring=0; iring<28; iring++){
double r_start = radius[iring] - 0.8;
double r_end = radius[iring] + 0.8;
double phi_start = phi[iring];
double phi_end = phi_start + TMath::TwoPi();
char hname[256];
sprintf(hname, "Amplitude_view_ring[%d]", iring+1);
Amplitude_view[iring+1] = new TH2D(hname, "", Nstraws[iring], phi_start, phi_end, 1, r_start, r_end);
sprintf(hname, "Direction_view_ring[%d]", iring+1);
Direction_view[iring+1] = new TH2D(hname, "", Nstraws[iring], phi_start, phi_end, 1, r_start, r_end);
sprintf(hname, "Vertical_view_ring[%d]", iring+1);
Vertical_view[iring+1] = new TH2D(hname, "", Nstraws[iring], phi_start, phi_end, 1, r_start, r_end);
sprintf(hname, "Horizontal_view_ring[%d]", iring+1);
Horizontal_view[iring+1] = new TH2D(hname, "", Nstraws[iring], phi_start, phi_end, 1, r_start, r_end);
}
//Fit function for
TF1 *f1 = new TF1("f1", "[0] + [1] * TMath::Cos(x + [2])", -3.14, 3.14);
f1->SetParLimits(0, 0.5, 1.0);
f1->SetParLimits(1, 0.0, 0.35);
//f1->SetParLimits(2, -3.14, 3.14);
f1->SetParameters(0.78, 0.0, 0.0);
outputFile->cd();
outputFile->mkdir("FitParameters");
outputFile->cd("FitParameters");
// Make some histograms to get the distributions of the fit parameters
TH1I *h1_c0 = new TH1I("h1_c0", "Distribution of Constant", 100, 0.5, 1.0);
TH1I *h1_c1 = new TH1I("h1_c1", "Distribution of Amplitude", 100, 0.0, 0.35);
TH1I *h1_c2 = new TH1I("h1_c2", "Direction of Longest Drift Time", 100, -3.14, 3.14);
TH1F *h1_c2_weighted = new TH1F("h1_c2_weighted", "Distribution of Direction weighted by amplitude", 100, -3.14, 3.14);
TH2I *h2_c0_c1 = new TH2I("h2_c0_c1", "c_{1} Vs. c_{0}; c_{0}; c_{1}", 100, 0.5, 1.0, 100, 0, 0.35);
TH2I *h2_c0_c2 = new TH2I("h2_c0_c2", "c_{2} Vs. c_{0}; c_{0}; c_{2}", 100, 0.5, 1.0, 100, -10, 10);
TH2I *h2_c1_c2 = new TH2I("h2_c1_c2", "c_{2} Vs. c_{1}; c_{1}; c_{2}", 100, 0.0, 0.35, 100, -10, 10);
outputFile->cd();
outputFile->mkdir("Fits");
outputFile->cd("Fits");
// Now we want to loop through all available module/layer/sector and try to make a fit of each one
int ring = 1, straw = 1;
while (ring <= 28){
cout << "Entering Fit " << endl;
char folder[100];
sprintf(folder, "Ring %.2i", ring);
char strawname[100];
sprintf(strawname,"Straw %.3i Predicted Drift Distance Vs phi_DOCA", straw);
TH2I *thisStrawHistogram = Get2DHistogram("CDC_Cosmic_Per_Straw",folder,strawname);
if (thisStrawHistogram != NULL) {
// Now to do our fits. This time we know there are 16 bins.
double percentile95[16], percentile97[16], percentile99[16]; // Location of 95, 97,and 99th percentile bins
double binCenter[16];
char name[100];
sprintf(name,"Ring %.2i Straw %.3i", ring, straw);
TH1D *extractedPoints = new TH1D(name, name, 16, -3.14, 3.14);
for (int i = 1; i <= thisStrawHistogram->GetNbinsX() ; i++){
TH1D *projY = thisStrawHistogram->ProjectionY(" ", i, i);
binCenter[i-1] = thisStrawHistogram->GetXaxis()->GetBinCenter(i);
int nbins = projY->GetNbinsX();
//Get the total nubmer of entries
int nEntries = projY->GetEntries();
if (nEntries == 0) continue;
double errorFraction = TMath::Sqrt(nEntries) / nEntries;
double perc95 = 0.95*nEntries, perc97 = 0.97 * nEntries, perc99 = 0.99 * nEntries;
//Accumulate from the beginning to get total, mark 95, 97, 99% location
int total = 0;
for (int j = 0; j <= nbins; j++){
total += projY->GetBinContent(j);
if (total > perc99) percentile99[i-1] = projY->GetBinCenter(j);
else if (total > perc97) {
percentile97[i-1] = projY->GetBinCenter(j);
extractedPoints->SetBinContent(i, projY->GetBinCenter(j));
extractedPoints->SetBinError(i, errorFraction * projY->GetBinCenter(j));
}
else if (total > perc95) percentile95[i-1] = projY->GetBinCenter(j);
}
}
f1->SetParameters(0.78, 0.0, 0.0);
TFitResultPtr fr = extractedPoints->Fit(f1, "SR");
Int_t fitStatus = fr;
if (fitStatus == 0){
double c0 = fr->Parameter(0);
double c1 = fr->Parameter(1);
double c2 = fr->Parameter(2);
// Move c2 to fit on our range
while (c2 > TMath::Pi()) c2 -= 2 * TMath::Pi();
while (c2 < -1* TMath::Pi()) c2 += 2 * TMath::Pi();
h1_c0->Fill(c0); h1_c1->Fill(c1); h1_c2->Fill(-1*c2); h1_c2_weighted->Fill(-1*c2,c1);
h2_c0_c1->Fill(c0,c1); h2_c0_c2->Fill(c0,c2); h2_c1_c2->Fill(c1,c2);
Amplitude_view[ring]->SetBinContent(straw,1,c1);
Direction_view[ring]->SetBinContent(straw,1,-1*c2);
Vertical_view[ring]->SetBinContent(straw,1,c1*TMath::Sin(-1*c2));
Horizontal_view[ring]->SetBinContent(straw,1,c1*TMath::Cos(-1*c2));
textFile << c1 << " " << c2 << endl;
}
else {
cout << "WARNING: Fit Status "<< fitStatus << " for ring " << ring << " straw " << straw << endl;
textFile << "0.0 0.0" << endl;
}
}
else{
textFile << "0.0 0.0" << endl;
}
// On to the next one
straw++;
if(straw > Nstraws[ring-1]){
straw = 1;
ring++;
}
}
outputFile->cd();
outputFile->mkdir("2D");
outputFile->cd("2D");
TCanvas *c_Amplitude = Plot2DCDC(Amplitude_view,"c_Amplitude", "Amplitude of Sinusoid", 0.0, 0.3);
TCanvas *c_Direction = Plot2DCDC(Direction_view,"c_Direction", "Direction of #delta", -3.14, 3.14);
TCanvas *c_Vertical = Plot2DCDC(Vertical_view,"c_Vertical", "Vertical Projection of Delta", -0.3, 0.3);
TCanvas *c_Horizontal = Plot2DCDC(Horizontal_view,"c_Horizontal", "Horizontal Projection of Delta", -0.3, 0.3);
c_Amplitude->Write();
c_Direction->Write();
c_Horizontal->Write();
c_Vertical->Write();
cout << "Closing Files..." << endl;
outputFile->Write();
thisFile->Close();
textFile.close();
return;
}