void correlationTreeLoop(int run,char *baseDir, char *corTreeDir, char *outputDir) {
// antTimeOffset[0] = 0.292591; deltaR[0] = -0.0384839; deltaPhi[ 0] = -0.0100608; deltaZ[0] = 0;
// antTimeOffset[1] = 0.172375; deltaR[1] = 0.00634697; deltaPhi[ 1] = -0.00313443; deltaZ[1] = 0;
// antTimeOffset[2] = 0.342454; deltaR[2] = -0.0861167; deltaPhi[ 2] = -0.015312; deltaZ[2] = 0;
// antTimeOffset[3] = 0.0248334; deltaR[3] = 0.0461873; deltaPhi[ 3] = 0.00206827; deltaZ[3] = 0;
// antTimeOffset[4] = 0.0372539; deltaR[4] = 0.0153388; deltaPhi[ 4] = -0.0227948; deltaZ[4] = 0;
// antTimeOffset[5] = 0.137506; deltaR[5] = -0.00927728; deltaPhi[ 5] = 0.00750385; deltaZ[5] = 0;
// antTimeOffset[6] = 0.0475841; deltaR[6] = 0.0239867; deltaPhi[ 6] = 0.00388065; deltaZ[6] = 0;
// antTimeOffset[7] = 0.123741; deltaR[7] = 0.0125282; deltaPhi[ 7] = -0.00131021; deltaZ[7] = 0;
// antTimeOffset[8] = 0.380551; deltaR[8] = -0.0111636; deltaPhi[ 8] = -0.0299233; deltaZ[8] = 0;
// antTimeOffset[9] = 0.445956; deltaR[9] = -0.0959452; deltaPhi[ 9] = -0.00165365; deltaZ[9] = 0;
// antTimeOffset[10] = 0.439757; deltaR[10] = -0.0330808; deltaPhi[ 10] = -0.0107407; deltaZ[10] = 0;
// antTimeOffset[11] = 0.244031; deltaR[11] = -0.0475617; deltaPhi[ 11] = 0.0145914; deltaZ[11] = 0;
// antTimeOffset[12] = 0.321419; deltaR[12] = 0.0196292; deltaPhi[ 12] = -0.0150373; deltaZ[12] = 0;
// antTimeOffset[13] = 0.118473; deltaR[13] = -0.0190837; deltaPhi[ 13] = -0.0121967; deltaZ[13] = 0;
// antTimeOffset[14] = 0.27363; deltaR[14] = -0.00922367; deltaPhi[ 14] = -0.0038106; deltaZ[14] = 0;
// antTimeOffset[15] = 0.187377; deltaR[15] = -0.0294811; deltaPhi[ 15] = 0.0106842; deltaZ[15] = 0;
// antTimeOffset[16] = 0.0682454; deltaR[16] = 0.0140245; deltaPhi[ 16] = -0.0087849; deltaZ[16] = 0;
// antTimeOffset[17] = 0.296899; deltaR[17] = -0.0621836; deltaPhi[ 17] = 0.000682206; deltaZ[17] = 0;
// antTimeOffset[18] = 0.180588; deltaR[18] = -0.0379325; deltaPhi[ 18] = -0.00516052; deltaZ[18] = 0;
// antTimeOffset[19] = 0.165257; deltaR[19] = -0.0108062; deltaPhi[ 19] = -0.00770935; deltaZ[19] = 0;
// antTimeOffset[20] = 0.176423; deltaR[20] = -0.0601935; deltaPhi[ 20] = -0.00862535; deltaZ[20] = 0;
// antTimeOffset[21] = 0.301777; deltaR[21] = -0.0968276; deltaPhi[ 21] = -0.00920648; deltaZ[21] = 0;
// antTimeOffset[22] = 0.0969425; deltaR[22] = -0.0348523; deltaPhi[ 22] = 0.00037431; deltaZ[22] = 0;
// antTimeOffset[23] = 0.0422886; deltaR[23] = 0.0121726; deltaPhi[ 23] = 0.00310935; deltaZ[23] = 0;
// antTimeOffset[24] = -0.01737; deltaR[24] = 0.0405193; deltaPhi[ 24] = -0.00546085; deltaZ[24] = 0;
// antTimeOffset[25] = 0.0412981; deltaR[25] = 0.0239992; deltaPhi[ 25] = -0.00901249; deltaZ[25] = 0;
// antTimeOffset[26] = 0.166311; deltaR[26] = -0.0405203; deltaPhi[ 26] = -0.0145529; deltaZ[26] = 0;
// antTimeOffset[27] = 0.139405; deltaR[27] = -0.00401756; deltaPhi[ 27] = -0.00666063; deltaZ[27] = 0;
// antTimeOffset[28] = 0.104575; deltaR[28] = -0.0362955; deltaPhi[ 28] = -0.00372999; deltaZ[28] = 0;
// antTimeOffset[29] = 0.0345155; deltaR[29] = -0.00587152; deltaPhi[ 29] = 0.00197442; deltaZ[29] = 0;
// antTimeOffset[30] = 0.082859; deltaR[30] = -0.00611182; deltaPhi[ 30] = -0.000789595; deltaZ[30] = 0;
// antTimeOffset[31] = 0.078192; deltaR[31] = -0.00321244; deltaPhi[ 31] = 0.000188257; deltaZ[31] = 0;
// antTimeOffset[32] = 0.0143052; deltaR[32] = -0.0437687; deltaPhi[ 32] = -0.00289577; deltaZ[32] = 0;
// antTimeOffset[33] = 0.0671887; deltaR[33] = -0.0643475; deltaPhi[ 33] = -0.0203117; deltaZ[33] = 0;
// antTimeOffset[34] = 0.0819606; deltaR[34] = -0.0804245; deltaPhi[ 34] = -0.00503387; deltaZ[34] = 0;
// antTimeOffset[35] = -0.0659071; deltaR[35] = -0.0112675; deltaPhi[ 35] = -0.000220575; deltaZ[35] = 0;
// antTimeOffset[36] = -0.212624; deltaR[36] = 0.0337428; deltaPhi[ 36] = -0.00416114; deltaZ[36] = 0;
// antTimeOffset[37] = -0.00431668; deltaR[37] = -0.0525977; deltaPhi[ 37] = -0.0223176; deltaZ[37] = 0;
// antTimeOffset[38] = 0.0899397; deltaR[38] = -0.101587; deltaPhi[ 38] = 0.0058874; deltaZ[38] = 0;
// antTimeOffset[39] = 0.0294537; deltaR[39] = -0.0401037; deltaPhi[ 39] = 0.00899651; deltaZ[39] = 0;
// antTimeOffset[0] = 0.16044; deltaR[0] = -0.0618352; deltaPhi[ 0] = -0.00280991; deltaZ[0] = 0.0287513;
// antTimeOffset[1] = 0.290365; deltaR[1] = -0.110188; deltaPhi[ 1] = -0.00372876; deltaZ[1] = 0.0170052;
// antTimeOffset[2] = 0.349607; deltaR[2] = -0.140583; deltaPhi[ 2] = -0.024769; deltaZ[2] = 0.0623979;
// antTimeOffset[3] = 0.033917; deltaR[3] = -0.0260668; deltaPhi[ 3] = 0.00113633; deltaZ[3] = 0.0423352;
// antTimeOffset[4] = -0.074643; deltaR[4] = -0.0356161; deltaPhi[ 4] = -0.0141947; deltaZ[4] = -0.00394529;
// antTimeOffset[5] = 0.156259; deltaR[5] = -0.095648; deltaPhi[ 5] = 0.0117896; deltaZ[5] = 0.0105241;
// antTimeOffset[6] = 0.212836; deltaR[6] = -0.0907411; deltaPhi[ 6] = -0.0122972; deltaZ[6] = 0.0516748;
// antTimeOffset[7] = 0.541271; deltaR[7] = -0.157934; deltaPhi[ 7] = -0.00368077; deltaZ[7] = 0.130464;
// antTimeOffset[8] = -0.128575; deltaR[8] = 0.0582477; deltaPhi[ 8] = -0.0111813; deltaZ[8] = -0.035067;
// antTimeOffset[9] = -0.122485; deltaR[9] = -0.0119241; deltaPhi[ 9] = -0.00668961; deltaZ[9] = -0.0579302;
// antTimeOffset[10] = -0.263916; deltaR[10] = 0.0811694; deltaPhi[ 10] = -0.00717066; deltaZ[10] = -0.0897962;
// antTimeOffset[11] = -0.229033; deltaR[11] = 0.00897635; deltaPhi[ 11] = -5.65709e-05; deltaZ[11] = -0.0366053;
// antTimeOffset[12] = -0.222093; deltaR[12] = 0.0800239; deltaPhi[ 12] = -0.00901442; deltaZ[12] = -0.0750748;
// antTimeOffset[13] = -0.68459; deltaR[13] = 0.108285; deltaPhi[ 13] = -0.0148342; deltaZ[13] = -0.133195;
// antTimeOffset[14] = -0.516002; deltaR[14] = 0.107793; deltaPhi[ 14] = -0.00133016; deltaZ[14] = -0.143198;
// antTimeOffset[15] = -0.749822; deltaR[15] = 0.145538; deltaPhi[ 15] = -0.00448024; deltaZ[15] = -0.118927;
// antTimeOffset[16] = 0.0961751; deltaR[16] = -0.0564912; deltaPhi[ 16] = -0.00220892; deltaZ[16] = 0.0532255;
// antTimeOffset[17] = -0.166225; deltaR[17] = 0.00298098; deltaPhi[ 17] = 0.00128378; deltaZ[17] = -0.0263557;
// antTimeOffset[18] = 0.178941; deltaR[18] = -0.0972098; deltaPhi[ 18] = -0.00837075; deltaZ[18] = 0.0461125;
// antTimeOffset[19] = 0.171386; deltaR[19] = -0.0643506; deltaPhi[ 19] = -0.00831496; deltaZ[19] = 0.0592813;
// antTimeOffset[20] = -0.0204964; deltaR[20] = -0.0803763; deltaPhi[ 20] = -0.00428327; deltaZ[20] = -0.00602899;
// antTimeOffset[21] = 0.160323; deltaR[21] = -0.101956; deltaPhi[ 21] = -0.0151547; deltaZ[21] = 0.0514858;
// antTimeOffset[22] = 0.053953; deltaR[22] = -0.0773129; deltaPhi[ 22] = -0.00414444; deltaZ[22] = 0.0562807;
// antTimeOffset[23] = 0.00325878; deltaR[23] = -0.0378326; deltaPhi[ 23] = 0.000528826; deltaZ[23] = 0.0517299;
// antTimeOffset[24] = -0.0670197; deltaR[24] = -0.0225655; deltaPhi[ 24] = -0.00391848; deltaZ[24] = 0.0263552;
// antTimeOffset[25] = 0.0035097; deltaR[25] = -0.0427118; deltaPhi[ 25] = -0.00285503; deltaZ[25] = 0.0211308;
// antTimeOffset[26] = -0.0337735; deltaR[26] = -0.062921; deltaPhi[ 26] = -0.00747562; deltaZ[26] = -0.0138518;
// antTimeOffset[27] = -0.110361; deltaR[27] = -0.0144298; deltaPhi[ 27] = -0.0028118; deltaZ[27] = -0.0318333;
// antTimeOffset[28] = -0.227861; deltaR[28] = -0.0389804; deltaPhi[ 28] = -0.0012114; deltaZ[28] = -0.0674168;
// antTimeOffset[29] = -0.081439; deltaR[29] = -0.0449712; deltaPhi[ 29] = -0.00826954; deltaZ[29] = 0.00548985;
// antTimeOffset[30] = 0.17098; deltaR[30] = -0.0938958; deltaPhi[ 30] = -0.00969672; deltaZ[30] = 0.0597671;
// antTimeOffset[31] = 0.0258336; deltaR[31] = -0.052614; deltaPhi[ 31] = -0.000359792; deltaZ[31] = 0.044548;
// antTimeOffset[32] = -0.425254; deltaR[32] = -0.0372025; deltaPhi[ 32] = -0.00536103; deltaZ[32] = -0.0978299;
// antTimeOffset[33] = -0.440596; deltaR[33] = -0.0534945; deltaPhi[ 33] = -0.0144455; deltaZ[33] = -0.136331;
// antTimeOffset[34] = -0.256048; deltaR[34] = -0.0884831; deltaPhi[ 34] = -0.00580407; deltaZ[34] = -0.0676089;
// antTimeOffset[35] = -0.601107; deltaR[35] = 0.0224642; deltaPhi[ 35] = -0.00283517; deltaZ[35] = -0.115955;
// antTimeOffset[36] = -0.472965; deltaR[36] = 0.0023781; deltaPhi[ 36] = -0.00319073; deltaZ[36] = -0.049661;
// antTimeOffset[37] = -0.498374; deltaR[37] = -0.0241109; deltaPhi[ 37] = -0.0168551; deltaZ[37] = -0.102832;
// antTimeOffset[38] = -0.466373; deltaR[38] = -0.0623884; deltaPhi[ 38] = 0.00665517; deltaZ[38] = -0.131102;
// antTimeOffset[39] = -0.382128; deltaR[39] = -0.040161; deltaPhi[ 39] = 0.00508923; deltaZ[39] = -0.100047;
AnitaGeomTool *fGeomTool = AnitaGeomTool::Instance();
fGeomTool->useKurtAnitaIINumbers(1);
char eventName[FILENAME_MAX];
char headerName[FILENAME_MAX];
char gpsName[FILENAME_MAX];
char corrName[FILENAME_MAX];
char outName[FILENAME_MAX];
// sprintf(baseDir,"http://www.hep.ucl.ac.uk/uhen/anita/private/monitor2/runs/fromLoki/");
sprintf(eventName,"%s/run%d/eventFile%d.root",baseDir,run,run);
sprintf(headerName,"%s/run%d/headFile%d.root",baseDir,run,run);
sprintf(gpsName,"%s/run%d/gpsEvent%d.root",baseDir,run,run);
sprintf(corrName,"%s/corRun%d.root",corTreeDir,run);
sprintf(outName,"%s/deltaTFile%d.root",outputDir,run);
RawAnitaHeader *header =0;
Adu5Pat *pat =0;
CorrelationSummary *corSum =0;
TFile *fpHead = TFile::Open(headerName);
TTree *headTree = (TTree*) fpHead->Get("headTree");
headTree->SetBranchAddress("header",&header);
headTree->BuildIndex("eventNumber");
TFile *fpGps = TFile::Open(gpsName);
TTree *adu5PatTree = (TTree*) fpGps->Get("adu5PatTree");
adu5PatTree->BuildIndex("realTime");
adu5PatTree->SetBranchAddress("pat",&pat);
Int_t labChip;
UInt_t expTaylorTime;
TFile *fpCor = new TFile(corrName);
TTree *corTree = (TTree*) fpCor->Get("corTree");
corTree->SetBranchAddress("cor",&corSum);
corTree->SetBranchAddress("labChip",&labChip);
corTree->SetBranchAddress("expTaylorTime",&expTaylorTime);
Long64_t numEntries=corTree->GetEntries();
int counter=0;
TFile *fpOut = new TFile(outName,"RECREATE");
Long64_t entry=0;
UInt_t eventNumber, triggerTime, triggerTimeNs;
Int_t firstAnt,secondAnt,maxAnt,corInd;
Double_t deltaT,deltaTExpected;
Double_t phiWave, phiMaxAnt;
Double_t thetaWave;
Double_t corPeak, corRMS;
Double_t balloonLat, balloonLon, balloonAlt;
Double_t heading,pitch,roll;
// Double_t deltaZ;
// Double_t deltaR;
Double_t meanPhiAntPair;
Double_t deltaPhiAntPair;
TTree *deltaTTree = new TTree("deltaTTree","Tree of Delta T's");
deltaTTree->Branch("entry",&entry,"entry/L");
deltaTTree->Branch("firstAnt",&firstAnt,"firstAnt/I");
deltaTTree->Branch("secondAnt",&secondAnt,"secondAnt/I");
deltaTTree->Branch("maxAnt",&maxAnt,"maxAnt/I");
deltaTTree->Branch("labChip",&labChip,"labChip/I");
deltaTTree->Branch("deltaT",&deltaT,"deltaT/D");
deltaTTree->Branch("deltaTExpected",&deltaTExpected,"deltaTExpected/D");
deltaTTree->Branch("corPeak",&corPeak,"corPeak/D");
deltaTTree->Branch("corRMS",&corRMS,"corRMS/D");
deltaTTree->Branch("phiMaxAnt",&phiMaxAnt,"phiMaxAnt/D");
deltaTTree->Branch("phiWave",&phiWave,"phiWave/D");
deltaTTree->Branch("thetaWave",&thetaWave,"thetaWave/D");
deltaTTree->Branch("eventNumber",&eventNumber,"eventNumber/i");
deltaTTree->Branch("triggerTime",&triggerTime,"triggerTime/i");
deltaTTree->Branch("triggerTimeNs",&triggerTimeNs,"triggerTimeNs/i");
deltaTTree->Branch("corInd",&corInd,"corInd/I");
deltaTTree->Branch("balloonLat",&balloonLat,"balloonLat/D");
deltaTTree->Branch("balloonLon",&balloonLon,"balloonLon/D");
deltaTTree->Branch("balloonAlt",&balloonAlt,"balloonAlt/D");
deltaTTree->Branch("heading",&heading,"heading/D");
deltaTTree->Branch("pitch",&pitch,"pitch/D");
deltaTTree->Branch("roll",&roll,"roll/D");
// deltaTTree->Branch("deltaZ",&deltaZ,"deltaZ/D");
// deltaTTree->Branch("deltaR",&deltaR,"deltaR/D");
deltaTTree->Branch("meanPhiAntPair",&meanPhiAntPair,"meanPhiAntPair/D");
deltaTTree->Branch("deltaPhiAntPair",&deltaPhiAntPair,"deltaPhiAntPair/D");
deltaTTree->Branch("expTaylorTime",&expTaylorTime,"expTaylorTime/i");
// Double_t thetaWave;
for(entry=0;entry<numEntries;entry++) {
corTree->GetEntry(entry);
Long64_t headEntry=headTree->GetEntryNumberWithIndex(corSum->eventNumber);
if(headEntry<0)
continue;
headTree->GetEntry(headEntry);
// if(header->triggerTimeNs*1e-9< 0.097 || header->triggerTimeNs*1e-9>0.1)
triggerTimeNs=header->triggerTimeNs;
triggerTime=header->triggerTime;
eventNumber=header->eventNumber;
adu5PatTree->GetEntry(headEntry);
// PrettyAnitaEvent realEvent(event,WaveCalType::kVTFullAGCrossCorClock,header);
balloonLat=pat->latitude;
balloonLon=pat->longitude;
balloonAlt=pat->altitude;
heading=pat->heading;
pitch=pat->pitch;
roll=pat->roll;
//Simon 30/04/09 numbers
// pat->pitch=0.64;
// pat->roll=0.14;
//Simon 02/05/09 numbers
// pat->pitch=0.76;
// pat->roll=0.13;
//Test heading offset
// pat->heading+=0.19;
// if(pat->heading>=360) pat->heading-=360;
// if(pat->heading<0) pat->heading+=360;
//
// pat->pitch=0.5;
// pat->roll=-0.1;
//Kurt numbers
pat->pitch=-0.29;
pat->roll=0.89;
// //Test heading offset
// pat->heading-=0.32;
if(pat->heading>=360) pat->heading-=360;
if(pat->heading<0) pat->heading+=360;
UsefulAdu5Pat usefulPat(pat);
for(corInd=0;corInd<35;corInd++) {
firstAnt=corSum->firstAnt[corInd];
secondAnt=corSum->secondAnt[corInd];
deltaT=corSum->maxCorTimes[corInd];
maxAnt=corSum->centreAntenna;
phiMaxAnt=fGeomTool->getAntPhiPositionRelToAftFore(corSum->centreAntenna,AnitaPol::kHorizontal)*TMath::RadToDeg();
//Default values
deltaTExpected=usefulPat.getDeltaTTaylor(corSum->firstAnt[corInd],corSum->secondAnt[corInd],AnitaPol::kHorizontal);
deltaTExpected=usefulPat.getDeltaTWillySeavey(corSum->firstAnt[corInd],corSum->secondAnt[corInd],AnitaPol::kHorizontal);
//These two lines are for use with Simon's array of numbers
// deltaTExpected=usefulPat.getDeltaTTaylorOpt(corSum->firstAnt[corInd],corSum->secondAnt[corInd],deltaR,deltaZ,deltaPhi);
// deltaT+=(antTimeOffset[firstAnt]-antTimeOffset[secondAnt]);
phiWave=usefulPat.getPhiWave();
thetaWave=usefulPat.getThetaWave();
corPeak=corSum->maxCorVals[corInd];
corRMS=corSum->rmsCorVals[corInd];
meanPhiAntPair=fGeomTool->getMeanAntPairPhiRelToAftFore(firstAnt,secondAnt,AnitaPol::kHorizontal);
deltaPhiAntPair=fGeomTool->getPhiDiff(phiWave,meanPhiAntPair);//,AnitaPol::kHorizontal);
// std::cout << phiWave << "\t" << meanPhiAntPair << "\t" << deltaPhiAntPair << "\n";
//Convert to degrees
deltaPhiAntPair*=TMath::RadToDeg();
phiWave*=TMath::RadToDeg();
thetaWave*=TMath::RadToDeg();
//Actually fill the tree
deltaTTree->Fill();
}
counter++;
if(counter%100==0)
cerr << "*";
}
deltaTTree->AutoSave();
fpOut->Close();
// histSimpleDtDiff->Draw();
}
double thetaOpt2(double *par){
int upperAntNums[NUM_PHI]={8,0,9,1,10,2,11,3,12,4,13,5,14,6,15,7};
int lowerAntNums[NUM_PHI]={16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31};
int lowerAntFromUpper[NUM_PHI]={17,19,21,23,25,27,29,31,16,18,20,22,24,26,28,30};
int nadirAntNums[NUM_PHI]={32,-1,33,-1,34,-1,35,-1,36,-1,37,-1,38,-1,39,-1};
int bottomFromNadir[8]={16,18,20,22,24,26,28,30};
Double_t deltaR[40]={0};
Double_t deltaZ[40]={0};
Double_t deltaPhi[40]={0};
Double_t deltaHeading[1]={0};
double deltaTArrayMod[40]={0};
int count3 = 0;
// for(int i = 0; i<32;i++){
// deltaR[i]=par[i];
// deltaZ[i]=par[i+32];
// deltaPhi[i]=par[i+64];
// cout << i << " " <<0 << " " << deltaR[i] << " " << deltaPhi[i] << " " << deltaZ[i] << endl;
// }
for(int i = 7; i<8;i++){
deltaR[7]=par[0];
deltaZ[7]=par[1];
deltaPhi[7]=par[2];
cout << i << " " <<0 << " " << deltaR[i] << " " << deltaPhi[i] << " " << deltaZ[i] << endl;
}
// for(int i = 0; i<16;i++){
// deltaPhi[i]=deltaPhi[i] + par[16];
// deltaPhi[i+16]=deltaPhi[i+16] + par[17];
// }
double theReturn = 0;
double sumMean = 0;
double sumMean2 = 0;
int count8 = 0;
double sumGrads = 0;
TMultiGraph *myMG = new TMultiGraph;
TMultiGraph *myMG3 = new TMultiGraph;
TMultiGraph *myMG2 = new TMultiGraph;;
AnitaGeomTool *fGeomTool = AnitaGeomTool::Instance();
char eventName[FILENAME_MAX];
char headerName[FILENAME_MAX];
char hkName[FILENAME_MAX];
char gpsName[FILENAME_MAX];
char corrName[FILENAME_MAX];
char outName[FILENAME_MAX];
char baseDir[FILENAME_MAX];
char *corTreeDir = "../../../Outfiles";
double dummyArray[40][1] ={{0}};
TGraph *tempAntGraph;
vector<vector<double> > phiAngle;
vector<vector<double> > deltaTVec;
vector<vector<int> > firstAntVec;
vector<vector<int> > secondAntVec;
vector<vector<double> > phiAngleArray2;
vector<vector<double> > deltaTArray2;
vector<double> temp;
vector<int> temp2;
temp.push_back(0);
temp2.push_back(0);
double deltaTArrayLoop[6000] ={0};
double phiAngleArrayLoop[6000] = {0};
int leftOpt, rightOpt;
double meanPhi[40] = {0};
meanPhi[0] =22.5-12.5;
meanPhi[1] =67.5-12.5;
meanPhi[2] =112.5-12.5;
meanPhi[3] =157.5-12.5;
meanPhi[4] =202.5-12.5;
meanPhi[5] =247.5-12.5;
meanPhi[6] =292.5-12.5;
meanPhi[7] =337.5-12.5;
meanPhi[8] =45-12.5;
meanPhi[9] =90-12.5;
meanPhi[10] =135-12.5;
meanPhi[11] =180-12.5;
meanPhi[12] =225-12.5;
meanPhi[13] =270-12.5;
meanPhi[14] =315-12.5;
meanPhi[15] =360-12.5;
meanPhi[16] = 22.5-12.5;
meanPhi[17] = 45-12.5;
meanPhi[18] = 67.5-12.5;
meanPhi[19] = 90-12.5;
meanPhi[20] = 112.5-12.5;
meanPhi[21] = 135-12.5;
meanPhi[22] = 157.5-12.5;
meanPhi[23] = 180-12.5;
meanPhi[24] = 202.5-12.5;
meanPhi[25] = 225-12.5;
meanPhi[26] = 247.5-12.5;
meanPhi[27] = 270-12.5;
meanPhi[28] = 292.5-12.5;
meanPhi[29] = 315-12.5;
meanPhi[30] = 337.5-12.5;
meanPhi[31] = 360-12.5;
meanPhi[32] = 22.5-12.5;
meanPhi[33] = 67.5-12.5;
meanPhi[34] = 112.5-12.5;
meanPhi[35] = 157.5-12.5;
meanPhi[36] = 202.5-12.5;
meanPhi[37] = 247.5-12.5;
meanPhi[38] = 292.5-12.5;
meanPhi[39] = 337.5-12.5;
for(int i =0; i < 40; i++){
phiAngleArray2.push_back(temp);
deltaTArray2.push_back(temp);
}
for(int loop = 1; loop <4; loop++){
int run = 16+loop;
//int run = 18;
canSurf->cd(loop+1);
phiAngle.clear();
deltaTVec.clear();
firstAntVec.clear();
secondAntVec.clear();
for(int i = 0; i < 40; i++){
phiAngle.push_back(temp);
deltaTVec.push_back(temp);
firstAntVec.push_back(temp2);
secondAntVec.push_back(temp2);
}
//sprintf(baseDir,"http://www.hep.ucl.ac.uk/uhen/anita/private/monitor2/runs/fromLoki/");
sprintf(baseDir,"/Users/simonbevan/Desktop/");
sprintf(eventName,"%s/run%d/eventFile%d.root",baseDir,run,run);
sprintf(headerName,"%s/run%d/headFile%d.root",baseDir,run,run);
sprintf(gpsName,"%s/run%d/gpsFile%d.root",baseDir,run,run);
sprintf(corrName,"%s/corRun%d.root",corTreeDir,run);
RawAnitaEvent *event = 0;
PrettyAnitaHk *hk = 0;
RawAnitaHeader *header =0;
Adu5Pat *pat =0;
CorrelationSummary *corSum =0;
TFile *fpHead = TFile::Open(headerName);
TTree *headTree = (TTree*) fpHead->Get("headTree");
headTree->SetBranchAddress("header",&header);
headTree->BuildIndex("eventNumber");
TFile *fpGps = TFile::Open(gpsName);
TTree *adu5PatTree = (TTree*) fpGps->Get("adu5PatTree");
adu5PatTree->BuildIndex("realTime");
adu5PatTree->SetBranchAddress("pat",&pat);
Int_t labChip;
TFile *fpCor = new TFile(corrName);
TTree *corTree = (TTree*) fpCor->Get("corTree");
corTree->SetBranchAddress("cor",&corSum);
corTree->SetBranchAddress("labChip",&labChip);
Long64_t numEntries=corTree->GetEntries();
int counter=0;
Long64_t entry=0;
UInt_t eventNumber, triggerTime, triggerTimeNs;
Int_t firstAnt,secondAnt,maxAnt,corInd;
Double_t deltaT,deltaTExpected;
Double_t phiWave, phiMaxAnt;
Double_t corPeak, corRMS;
Double_t balloonLat, balloonLon, balloonAlt;
Double_t heading,pitch,roll;
Double_t thetaWave;
for(entry=0;entry<numEntries;entry++) {
corTree->GetEntry(entry);
Long64_t headEntry=headTree->GetEntryNumberWithIndex(corSum->eventNumber);
if(headEntry<0)
continue;
headTree->GetEntry(headEntry);
if( (header->triggerTimeNs>0.5e6) || (header->triggerTimeNs<0.2e6) )
continue;
triggerTimeNs=header->triggerTimeNs;
triggerTime=header->triggerTime;
eventNumber=header->eventNumber;
Long64_t bestEntry = adu5PatTree->GetEntryNumberWithBestIndex(header->triggerTime);
if(bestEntry>-1)
adu5PatTree->GetEntry(bestEntry);
else
continue;
balloonLat=pat->latitude;
balloonLon=pat->longitude;
balloonAlt=pat->altitude;
heading=pat->heading;
pat->pitch=0.64;
pat->roll=0.14;
pitch=pat->pitch;
roll=pat->roll;
UsefulAdu5Pat usefulPat(pat);
for(corInd=0;corInd<19;corInd++) {
firstAnt=corSum->firstAnt[corInd];
secondAnt=corSum->secondAnt[corInd];
//replace taylor dome
usefulPat.fSourceLongitude=0;
// deltaTExpected=usefulPat.getDeltaTTaylor(corSum->firstAnt[corInd],corSum->secondAnt[corInd]);
deltaTExpected=usefulPat.getDeltaTTaylorOpt(corSum->firstAnt[corInd],corSum->secondAnt[corInd],deltaR,deltaZ,deltaPhi);
deltaT=corSum->maxCorTimes[corInd];
maxAnt=corSum->centreAntenna;
phiWave=usefulPat.getPhiWave()*TMath::RadToDeg();
phiMaxAnt=fGeomTool->getAntPhiPositionRelToAftFore(corSum->centreAntenna)*TMath::RadToDeg();
corPeak=corSum->maxCorVals[corInd];
corRMS=corSum->rmsCorVals[corInd];
if((deltaT - deltaTExpected)*(deltaT - deltaTExpected) < 1 && (corPeak/corRMS)>8 ){
phiAngle[0].push_back(phiWave);
deltaTVec[0].push_back(deltaT - deltaTExpected + deltaTArrayMod[firstAnt] - deltaTArrayMod[secondAnt]);
firstAntVec[0].push_back(firstAnt);
secondAntVec[0].push_back(secondAnt);
}
}
counter++;
}
double deltaTArray[40][3000] = {{0}};
double phiAngleArray[40][3000]= {{0}};
double deltaTArrayCut[40][3000]= {{0}};
double phiAngleArrayCut[40][3000]= {{0}};
int whichCut[40][3000] = {{0}};
int middleAnt;
int leftAnt,rightAnt;
int countArray[40] = {0};
//fill arrays
//for(int ants = par[0]; ants < par[0]+1; ants++){
for(int ants = 0; ants < 32; ants++){
double lower = meanPhi[ants] - 20;
double upper = meanPhi[ants] + 10;
// double lower = 0;
// double upper = 360;
if(ants<8){
lower = lower;
upper=upper;
if(lower < 0){
lower = 0;
upper = 20;
}
if(upper > 360){
lower = 330;
upper = 360;
}
}else if(ants<16){
lower = lower;
upper= upper;
if(lower < 0){
lower = 330;
upper = 355;
}
if(upper > 360){
lower = 330;
upper = 360;
}
}
int count = 0;
int count2 = 0;
count3 = 0;
double sumPhi = 0;
bool true1 = false;
bool true2 = false;
if(ants <32){
fGeomTool->getThetaPartners(ants,leftAnt,rightAnt);
}else{
leftAnt = ants;
rightAnt = ants +1;
if(ants == 39){
leftAnt = ants;
rightAnt = 32;
}
}
for(int events = 1; events < phiAngle[0].size(); events++){
int firstAntTemp = (int)firstAntVec[0][events];
int secondAntTemp = (int)secondAntVec[0][events];
int rightTemp = int(rightAnt);
int aboveTemp = 0;
if(ants <16){
aboveTemp = lowerAntFromUpper[ants];
}else{
aboveTemp = upperAntNums[ants-16];
}
if(firstAntTemp < 32){
if( ((firstAntTemp == ants) && (secondAntTemp == rightTemp))){
//if((firstAntTemp == ants) && (secondAntTemp == rightTemp)){
if((phiAngle[0][events] > lower ) && (phiAngle[0][events]< upper)){
deltaTArray[ants][count] = deltaTVec[0][events];
phiAngleArray[ants][count] = phiAngle[0][events];
whichCut[ants][count] = 1;
count++;
}
} else if(((firstAntTemp == ants) && (secondAntTemp == aboveTemp))){
// //if((firstAntTemp == ants) && (secondAntTemp == rightTemp)){
double lower = meanPhi[ants] - 20;
double upper = meanPhi[ants] + 10;
// double lower = 0;
// double upper = 360;
if(ants<8){
lower = lower;
upper=upper;
if(lower < 0){
lower = 0;
upper = 20;
}
if(upper > 360){
lower = 330;
upper = 360;
}
}else if(ants<16){
lower = lower - 45;
upper= upper - 45;
if(lower < 0){
lower = 330;
upper = 355;
}
if(upper > 360){
lower = 330;
upper = 360;
}
}
// if((phiAngleArray[ants][events] > lower ) && (phiAngleArray[ants][events]< upper)){
if((phiAngle[0][events] > lower ) && (phiAngle[0][events]< upper)){
deltaTArray[ants][count] = deltaTVec[0][events];
phiAngleArray[ants][count] = phiAngle[0][events];
whichCut[ants][count] = 0;
count++;
}
}
}else{
rightTemp = firstAntTemp+1;
if(rightTemp>39){
rightTemp = 32;
}
if(firstAntTemp == ants){
}
if((firstAntTemp == ants) && (secondAntTemp == rightTemp)){
deltaTArray[ants][count] = deltaTVec[0][events];
phiAngleArray[ants][count] = phiAngle[0][events];
whichCut[ants][count] = 3;
count++;
}
}
}
countArray[ants] = count;
}
//make cuts
for(int ants = 0; ants < 32; ants++){
count3 = 0;
if(ants <32){
fGeomTool->getThetaPartners(ants,leftAnt,rightAnt);
}else{
leftAnt = ants -1;
rightAnt = ants +1;
if(ants == 39){
leftAnt = ants - 1;
rightAnt = 32;
}
}
double sumPhi = 0;
double lower = meanPhi[ants] - 20;
double upper = meanPhi[ants] + 10;
// double lower = 0;
// double upper = 360;
if(ants<8){
lower = lower;
upper=upper;
if(lower < 0){
lower = 0;
upper = 20;
}
if(upper > 360){
lower = 330;
upper = 360;
}
}else if(ants<16){
lower = lower;
upper= upper;
if(lower < 0){
lower = 330;
upper = 355;
}
if(upper > 360){
lower = 330;
upper = 360;
}
}
for(int events = 0; events < countArray[ants]; events++){
// if(whichCut[ants][events]==1){
// lower = meanPhi[ants] - 20;
// upper = meanPhi[ants] + 20;
// if(lower < 0){
// lower = 0;
// upper = 20;
// }
// if(upper > 360){
// lower = 330;
// upper = 360;
// }
// }
// if((phiAngleArray[ants][events] > lower ) && (phiAngleArray[ants][events]< upper)){
phiAngleArrayCut[ants][count3] = phiAngleArray[ants][events];
deltaTArrayCut[ants][count3] = deltaTArray[ants][events];
count3++;
// }
}
for(int events = 0; events < count3-1; events++){
phiAngleArray2[ants].push_back(phiAngleArrayCut[ants][events]);
deltaTArray2[ants].push_back(deltaTArrayCut[ants][events]);
}
}
delete event;
delete hk;
delete header;
delete pat;
delete corSum;
delete fpHead;
delete fpGps ;
delete fpCor;
}
sumMean = 0;
sumMean2 = 0;
sumGrads = 0;
for(int ants = 0; ants < 32; ants++){
count8 = 0;
for(int events = 1; events < phiAngleArray2[ants].size(); events++){
if( deltaTArrayLoop[count8]<1){
deltaTArrayLoop[count8] = deltaTArray2[ants][events];
phiAngleArrayLoop[count8] = phiAngleArray2[ants][events];
count8++;
}
}
if(count8==0){
tempAntGraph = new TGraph(1, dummyArray[ants], dummyArray[ants]);
}else{
tempAntGraph = new TGraph(count8-1, phiAngleArrayLoop, deltaTArrayLoop);
if(ants == 7){
canSurf->cd(1);
tempAntGraph->SetMinimum(-0.5);
tempAntGraph->SetMaximum(0.5);
tempAntGraph->Draw("ap");
tempAntGraph->SetMarkerStyle(1);
tempAntGraph->GetXaxis()->SetLimits(0,360);
sumMean = sumMean + tempAntGraph->GetMean(2)*tempAntGraph->GetMean(2);
if(ants == 8 || ants == 16 || ants == 12 || ants == 24){
tempAntGraph->SetMarkerColor(8);
}
if(ants == 3 || ants == 7 || ants == 23 || ants == 31){
tempAntGraph->SetMarkerColor(1);
}
if(ants == 9 || ants == 13 || ants == 18 || ants == 26){
tempAntGraph->SetMarkerColor(2);
}
if(ants == 10 || ants == 14 || ants == 20 || ants == 28){
tempAntGraph->SetMarkerColor(3);
}
if(ants == 11 || ants == 15 || ants == 22 || ants == 30){
tempAntGraph->SetMarkerColor(4);
}
if(ants == 0 || ants == 4 || ants == 17 || ants == 25){
tempAntGraph->SetMarkerColor(5);
}
if(ants == 2 || ants == 6 || ants == 21 || ants == 29){
tempAntGraph->SetMarkerColor(6);
}
if(ants == 1 || ants == 5 || ants == 19 || ants == 27){
tempAntGraph->SetMarkerColor(7);
}
tempAntGraph->GetXaxis()->SetTitle("phi (degrees)");
tempAntGraph->GetYaxis()->SetTitle("actual - expected time");
myMG2->Add(tempAntGraph);
myMG2->Draw("p");
vector<double> myFit = leastSquares(phiAngleArrayLoop, deltaTArrayLoop, count8-1);
double slope = myFit[0];
double intercept = myFit[1];
double tempX[2] = {slope*(meanPhi[ants]-20)+intercept,slope*(meanPhi[ants]+20)+intercept};
double tempY[2] = {(meanPhi[ants]-20),(meanPhi[ants]+20)};
sumGrads = sumGrads + myFit[0]*myFit[0]*10000;
}
}
}
cout << " " << endl;
cout << sumMean << " " << sumGrads <<endl;
canSurf->Update();
cout << " " << endl;
theReturn = sumMean+sumGrads;
return theReturn;
}
