bool
ASTCiNumberNode::read(XMLInputStream& stream, const std::string& reqd_prefix)
{
bool read = false;
const XMLToken element = stream.next ();
const string& nameE = element.getName();
ASTBase::checkPrefix(stream, reqd_prefix, element);
if (nameE != "ci")
{
#if 0
cout << "HELP\n";
#endif
return read;
}
ExpectedAttributes expectedAttributes;
addExpectedAttributes(expectedAttributes, stream);
read = readAttributes(element.getAttributes(), expectedAttributes,
stream, element);
const string name = trim( stream.next().getCharacters() );
setName((name));
ASTBase::setType(AST_NAME);
if (read == true)
stream.skipPastEnd(element);
return read;
}
/*
* Reads other XML such as math/notes etc.
*/
bool
Uncertainty::readOtherXML(XMLInputStream& stream)
{
bool read = false;
const string& name = stream.peek().getName();
if (name == "UncertML")
{
const XMLToken& token = stream.next();
stream.skipText();
delete mUncertML;
XMLNode* xml = new XMLNode(stream);
mUncertML = new UncertMLNode(xml);
stream.skipPastEnd(token);
delete xml;
read = true;
}
if (SBase::readOtherXML(stream))
{
read = true;
}
return read;
}
bool
ASTUnaryFunctionNode::read(XMLInputStream& stream, const std::string& reqd_prefix)
{
bool read = false;
ASTBase * child = NULL;
const XMLToken element = stream.peek ();
ASTBase::checkPrefix(stream, reqd_prefix, element);
const char* name = element.getName().c_str();
setType(getTypeFromName(name));
ASTBase::read(stream, reqd_prefix);
unsigned int numChildrenAdded = 0;
if (getExpectedNumChildren() > 0)
{
while (stream.isGood() && numChildrenAdded < getExpectedNumChildren())
{
stream.skipText();
name = stream.peek().getName().c_str();
if (representsNumber(ASTBase::getTypeFromName(name)) == true)
{
child = new ASTNumber();
}
else
{
child = new ASTFunction();
}
read = child->read(stream, reqd_prefix);
stream.skipText();
if (read == true && addChild(child) == LIBSBML_OPERATION_SUCCESS)
{
numChildrenAdded++;
}
else
{
delete child;
child = NULL;
read = false;
break;
}
}
}
else
{
stream.skipPastEnd(element);
read = true;
}
return read;
}
bool
ASTNaryFunctionNode::read(XMLInputStream& stream, const std::string& reqd_prefix)
{
bool read = false;
ASTBase * child = NULL;
const XMLToken element = stream.peek ();
ASTBase::checkPrefix(stream, reqd_prefix, element);
const char* name = element.getName().c_str();
int type = getTypeFromName(name);
setType(type);
ASTBase::read(stream, reqd_prefix);
unsigned int numChildrenAdded = 0;
if (getExpectedNumChildren() > 0)
{
while (stream.isGood() && numChildrenAdded < getExpectedNumChildren())
{
stream.skipText();
name = stream.peek().getName().c_str();
if (representsNumber(ASTBase::getTypeFromName(name)) == true)
{
child = new ASTNumber();
}
else
{
child = new ASTFunction();
}
read = child->read(stream, reqd_prefix);
stream.skipText();
if (read == true && addChild(child) == LIBSBML_OPERATION_SUCCESS)
{
numChildrenAdded++;
}
else
{
delete child;
child = NULL;
read = false;
break;
}
}
}
else
{
stream.skipPastEnd(element);
read = true;
}
if (read == true && type == AST_FUNCTION_ROOT
&& getExpectedNumChildren() == 1
&& ASTFunctionBase::getChild(0)->getType() != AST_QUALIFIER_DEGREE)
{
/* HACK TO REPLICATE OLD BEHAVIOUR */
/* we need to add the qualifier child for the degree 2 */
ASTFunction * degree = new ASTFunction(AST_QUALIFIER_DEGREE);
ASTNumber * int2 = new ASTNumber(AST_INTEGER);
int2->setInteger(2);
degree->addChild(int2->deepCopy());
this->prependChild(degree->deepCopy());
delete int2;
delete degree;
}
//if (read == false)
//{
// stream.skipPastEnd(element);
//}
return read;
}
bool
ASTCSymbolDelayNode::read(XMLInputStream& stream, const std::string& reqd_prefix)
{
bool read = false;
XMLToken element = stream.peek ();
const string& nameE = element.getName();
if (nameE != "csymbol")
{
#if 0
cout << "HELP\n";
#endif
return read;
}
ASTBase::read(stream, reqd_prefix);
const string nameDelay = trim( stream.next().getCharacters() );
setName((nameDelay));
ASTBase::setType(AST_FUNCTION_DELAY);
stream.skipPastEnd(element);
const char * name;
ASTBase * child = NULL;
unsigned int numChildrenAdded = 0;
// catch if we do not have two children
if (getExpectedNumChildren() > 0)
{
while (stream.isGood() && numChildrenAdded < getExpectedNumChildren())
{
stream.skipText();
name = stream.peek().getName().c_str();
if (representsNumber(ASTBase::getTypeFromName(name)) == true)
{
child = new ASTNumber();
}
else
{
child = new ASTFunction();
}
read = child->read(stream, reqd_prefix);
stream.skipText();
if (read == true && addChild(child) == LIBSBML_OPERATION_SUCCESS)
{
numChildrenAdded++;
}
else
{
read = false;
break;
}
}
}
else
{
stream.skipPastEnd(element);
read = true;
}
return read;
}