void printList(numList & L) {
// Print the integers in list L, 5 per line.
for (int i=1; i <= L.size(); i++) {
cout << " " << L.getnum(i) ;
if (!(i%5) ) cout << endl; // Start new line after every 5th one.
}
if (!((i-1)%5)) cout << endl; // End last line if needed.
} // end printList
int printBase(numList bases)
{
for (int i = 0 ; i < bases.size(); i ++)
{
cout << bases[i] << "\t";
}
return 0;
}
num S(numList& a)
{
int f_size = sizeof...(g);
int g_size = a.size();
numList b;
func g_i[sizeof...(g)] = { g... };
for (int i = 0; i < f_size; i++)
b.push_back(g_i[i](a));
return f(b);
}
// correct MD sepearte list
// also collect deletion base list
string correctMDstring(numList MDnum, stringList MDLetter, stringList &deletions)
{
string MDList;
int i = 0;
//make deletion list
for (int i = 0; i < MDnum.size(); i ++)
{
if (MDLetter[i][0] == '^')
{
deletions.push_back(MDLetter[i]);
}
}
MDList = creatMDstring(MDnum,MDLetter);
return MDList;
}
// create sequence-like MD string
// returning a line with mismatch and match annotation
// for each base, for example:
// MD:1A20
// result: =A====================
string creatMDstring(numList MDnum, stringList MDletter)
{
string MDstring;
for (int i = 0; i < MDnum.size(); i++)
{
if (MDletter[i][0] != '^' && MDletter[i] != "N" && MDletter[i] != "END")
{
MDstring.append(string(MDnum[i],'='));
MDstring.append(MDletter[i]);
}
else
{
MDstring.append(string(MDnum[i],'='));
}
}
return MDstring;
}
