void TreeSTag::removeNOPLoop(unsigned int inN, GP::Context& ioContext) {
GP::Tree& lActualTree = ioContext.getGenotype();
if(lActualTree[inN].mPrimitive->getName() == "NOP") {
//Decrease the subtree size of the call stack
for(unsigned i = 0; i < ioContext.getCallStackSize(); ++i) {
lActualTree[ioContext.getCallStack()[i]].mSubTreeSize -= 1;
}
//Delete the primitive from the tree
std::vector< GP::Node,BEAGLE_STLALLOCATOR<GP::Node> >::iterator lPrimitiveIter = lActualTree.begin();
lPrimitiveIter += inN;
lActualTree.erase(lPrimitiveIter);
// cout << "Callstack: " << ioContext.getCallStack()[0];
// for(unsigned int i = 1; i < ioContext.getCallStackSize() ; ++i) {
// cout << ", " << ioContext.getCallStack()[0];
// } cout << endl;
// for(unsigned int i = 0; i < lActualTree.size(); ++i) {
// cout << i << " : " << lActualTree[i].mPrimitive->getName() << " : " << lActualTree[i].mSubTreeSize << endl;
// }
removeNOPLoop(inN, ioContext);
} else {
//Parse all arguments
ioContext.pushCallStack(inN);
for(unsigned int i = 0; i < lActualTree[inN].mPrimitive->getNumberArguments(); ++i) {
removeNOPLoop(lActualTree[inN].mPrimitive->getChildrenNodeIndex(i,ioContext), ioContext);
}
ioContext.popCallStack();
}
}
/*!
* \brief Invoke GP tree to execute as ADF.
* \param outResult Result of GP tree invocation
* \param ioTree Tree to invoke.
* \param ioContext Evolutionary context.
*/
void GP::Module::invoke(GP::Datum& outResult, GP::Tree::Handle ioTree, GP::Context& ioContext)
{
Beagle_StackTraceBeginM();
GP::Tree::Handle lOldGenotypeHandle = ioContext.getGenotypeHandle();
unsigned int lOldGenotypeIndex = ioContext.getGenotypeIndex();
ioContext.setGenotypeHandle(ioTree);
ioContext.setGenotypeIndex(mIndex);
ioContext.incrementNodesExecuted();
ioContext.pushCallStack(0);
Beagle_LogVerboseM(
ioContext.getSystem().getLogger(),
"EMA", "Beagle::GP::Module",
std::string("Interpreting the ")+uint2ordinal(mIndex+1)+std::string(" module")
);
Beagle_LogObjectDebugM(
ioContext.getSystem().getLogger(),
"EMA", "Beagle::GP::Module",
*ioTree
);
(*ioTree)[0].mPrimitive->execute(outResult, ioContext);
ioContext.popCallStack();
ioContext.checkExecutionTime();
ioContext.setGenotypeHandle(lOldGenotypeHandle);
ioContext.setGenotypeIndex(lOldGenotypeIndex);
Beagle_StackTraceEndM("void GP::Module::invoke(GP::Datum& outResult, GP::Tree::Handle ioTree, GP::Context& ioContext)");
}
/*!
* \brief Interpret the GP individual.
* \param outResult Datum containing the result of the interpretation.
* \param ioContext GP evolutionary context.
* \throw Beagle::ObjectException When individual or tree are empty.
* \throw Beagle::AssertException When context is not correctly set.
* \throw Beagle::GP::MaxNodesExecutionException If number of nodes execution is more than allowed.
* \throw Beagle::GP::MaxTimeExecutionException If elapsed execution time is more than allowed.
*/
void GP::Individual::run(GP::Datum& outResult, GP::Context& ioContext)
{
Beagle_StackTraceBeginM();
if(&ioContext.getIndividual() != this) {
std::ostringstream lOSS;
lOSS << "In GP::Individual::run(): For the given context, ";
lOSS << "getIndividual() did not return the same individual as was passed to this (run) ";
lOSS << "method. Consider setting the context's individual to be the same by using the ";
lOSS << "method Context::setIndividualHandle().";
throw Beagle_RunTimeExceptionM(lOSS.str());
}
if(empty()) throw Beagle_ObjectExceptionM("Could not interpret, individual has no trees!");
if((*this)[0]->empty()) throw Beagle_ObjectExceptionM("Could not interpret, 1st tree is empty!");
Tree::Handle lOldTreeHandle = ioContext.getGenotypeHandle();
unsigned int lOldTreeIndex = ioContext.getGenotypeIndex();
ioContext.setGenotypeIndex(0);
ioContext.setGenotypeHandle((*this)[0]);
Beagle_LogVerboseM(
ioContext.getSystem().getLogger(),
std::string("Running the ")+uint2ordinal(ioContext.getIndividualIndex()+1)+
std::string(" individual")
);
Beagle_LogDebugM(
ioContext.getSystem().getLogger(),
std::string("The individual is: ")
);
Beagle_LogDebugM(
ioContext.getSystem().getLogger(),
(*this)
);
Beagle_LogDebugM(
ioContext.getSystem().getLogger(),
std::string("Executing the first tree root node '")+
(*(*this)[0])[0].mPrimitive->getName()+"'"
);
ioContext.setNodesExecutionCount(0);
ioContext.incrementNodesExecuted();
ioContext.getExecutionTimer().reset();
ioContext.pushCallStack(0);
(*(*this)[0])[0].mPrimitive->execute(outResult, ioContext);
ioContext.popCallStack();
ioContext.checkExecutionTime();
Beagle_LogDebugM(
ioContext.getSystem().getLogger(),
std::string("Result of executing the ")+uint2ordinal(ioContext.getIndividualIndex()+1)+
std::string(" individual: ")+outResult.serialize()
);
ioContext.setGenotypeIndex(lOldTreeIndex);
ioContext.setGenotypeHandle(lOldTreeHandle);
Beagle_StackTraceEndM();
}
/*!
* \brief Invoke GP tree to execute as ADF.
* \param outResult Result of GP tree invocation
* \param ioTree Tree to invoke.
* \param ioContext Evolutionary context.
*/
void GP::ADF::invoke(GP::Datum& outResult, GP::Tree::Handle ioTree, GP::Context& ioContext)
{
Beagle_StackTraceBeginM();
GP::Tree::Handle lOldGenotypeHandle = ioContext.getGenotypeHandle();
unsigned int lOldGenotypeIndex = ioContext.getGenotypeIndex();
ioContext.setGenotypeHandle(ioTree);
ioContext.setGenotypeIndex(mIndex);
ioContext.incrementNodesExecuted();
ioContext.pushCallStack(0);
(*ioTree)[0].mPrimitive->execute(outResult, ioContext);
ioContext.popCallStack();
ioContext.checkExecutionTime();
ioContext.setGenotypeHandle(lOldGenotypeHandle);
ioContext.setGenotypeIndex(lOldGenotypeIndex);
Beagle_StackTraceEndM("void GP::ADF::invoke(GP::Datum& outResult, GP::Tree::Handle ioTree, GP::Context& ioContext)");
}
/*!
* \brief Build a roulette of nodes that can be selected following the constraints penalties.
* \param ioRoulette Roulette of nodes that can be selected following the constraints given.
* \param inSelectABranch True if node to select must be a branch, false if it must a leaf.
* \param inNodeReturnType Desired return type for the nodes to be selected.
* \param inMaxSubTreeDepth Maximum sub tree depth allowed of the node to be selected.
* \param inMaxSubTreeSize Maximum sub tree size allowed of the node to be selected.
* \param inActualIndex Index in actual tree of the node processed.
* \param inTree Tree processed.
* \param ioContext Evolutionary context.
* \return Max depth of subtree processed.
*/
unsigned int STGP::CrossoverConstrainedOp::buildRouletteWithType(
RouletteT< std::pair<unsigned int,unsigned int> >& ioRoulette,
bool inSelectABranch,
const std::type_info* inNodeReturnType,
unsigned int inMaxSubTreeDepth,
unsigned int inMaxSubTreeSize,
unsigned int inActualIndex,
GP::Tree& inTree,
GP::Context& ioContext) const
{
Beagle_StackTraceBeginM();
const unsigned int lNbArgs = inTree[inActualIndex].mPrimitive->getNumberArguments();
const unsigned int lSubTreeSize = inTree[inActualIndex].mSubTreeSize;
const bool lGoodArity = ((inTree.size()==1) || ((lNbArgs==0) != inSelectABranch));
ioContext.pushCallStack(inActualIndex);
const std::type_info* lNodeType = inTree[inActualIndex].mPrimitive->getReturnType(ioContext);
const bool lCompatibleTyping = ((inNodeReturnType==NULL) || (lNodeType==NULL) ||
(inNodeReturnType==lNodeType));
unsigned int lChildIndex = inActualIndex+1;
unsigned int lMaxDepthDown = 0;
for(unsigned int i=0; i<lNbArgs; ++i) {
unsigned int lChildDepth = buildRouletteWithType(ioRoulette,
inSelectABranch,
inNodeReturnType,
inMaxSubTreeDepth,
inMaxSubTreeSize,
lChildIndex,
inTree,
ioContext);
lChildIndex += inTree[lChildIndex].mSubTreeSize;
if(lChildDepth > lMaxDepthDown) lMaxDepthDown = lChildDepth;
}
++lMaxDepthDown;
const unsigned int lMaxDepthUp = ioContext.getCallStackSize();
ioContext.popCallStack();
if(lGoodArity && lCompatibleTyping && (lSubTreeSize<=inMaxSubTreeSize) &&
(lMaxDepthDown<=inMaxSubTreeDepth) && (lMaxDepthUp<=inMaxSubTreeDepth)) {
std::pair<unsigned int,unsigned int> lPair(ioContext.getGenotypeIndex(), inActualIndex);
ioRoulette.insert(lPair, 1.0);
}
return lMaxDepthDown;
Beagle_StackTraceEndM();
}
/*!
* \brief Initialize a GP constrained sub-tree of a specified depth using the "full" approach.
* \param ioTree Tree containing the sub-tree to initialize.
* \param inSubTreeDepth Depth of the sub-tree to initialize.
* \param ioContext Evolutionary context.
* \return Generated sub-tree size.
*/
unsigned int GP::InitFullConstrainedOp::initConstrainedSubTreeFull(GP::Tree& ioTree,
unsigned int inSubTreeDepth,
GP::Context& ioContext) const
{
Beagle_StackTraceBeginM();
Beagle_AssertM(inSubTreeDepth>0);
GP::PrimitiveSet& lPrimitSet = ioTree.getPrimitiveSet(ioContext);
GP::Primitive::Handle lPrimit = NULL;
const unsigned int lNodeIndex = ioTree.size();
for(unsigned int lAttempt=0; lAttempt < mNumberAttempts->getWrappedValue(); ++lAttempt) {
#ifdef BEAGLE_HAVE_RTTI
const std::type_info* lDesiredType = NULL;
if(ioTree.size()==0) lDesiredType = ioTree.getRootType(ioContext);
else {
const unsigned int lParentIndex = ioContext.getCallStackTop();
unsigned int lArgsIndexChild = 0;
for(unsigned int lChildIndex=(lParentIndex+1);
lChildIndex!=lNodeIndex; lChildIndex += ioTree[lChildIndex].mSubTreeSize) {
Beagle_AssertM(lChildIndex <= ioTree.size());
++lArgsIndexChild;
Beagle_AssertM(lArgsIndexChild < ioTree[lParentIndex].mPrimitive->getNumberArguments());
}
lDesiredType = ioTree[lParentIndex].mPrimitive->getArgType(lArgsIndexChild, ioContext);
}
if(inSubTreeDepth == 1) {
lPrimit = lPrimitSet.selectWithType(GP::Primitive::eTerminal, lDesiredType, ioContext);
if(!lPrimit) return 0;
lPrimit = lPrimit->giveReference(GP::Primitive::eTerminal, ioContext);
} else {
lPrimit = lPrimitSet.selectWithType(GP::Primitive::eBranch, lDesiredType, ioContext);
if(!lPrimit) return 0;
lPrimit = lPrimit->giveReference(GP::Primitive::eBranch, ioContext);
}
#else // BEAGLE_HAVE_RTTI
if(inSubTreeDepth == 1) {
lPrimit = lPrimitSet.select(GP::Primitive::eTerminal, ioContext);
if(!lPrimit) {
string lMessage = "There is no leaf (primitive without argument) in the ";
lMessage += uint2ordinal(ioContext.getGenotypeIndex());
lMessage += " primitive set!";
throw Beagle_RunTimeExceptionM(lMessage);
}
lPrimit = lPrimit->giveReference(GP::Primitive::eTerminal, ioContext);
} else {
lPrimit = lPrimitSet.select(GP::Primitive::eBranch, ioContext);
if(!lPrimit) {
string lMessage = "There is no branch (primitive with arguments) in the ";
lMessage += uint2ordinal(ioContext.getGenotypeIndex());
lMessage += " primitive set!";
throw Beagle_RunTimeExceptionM(lMessage);
}
lPrimit = lPrimit->giveReference(GP::Primitive::eBranch, ioContext);
}
#endif // BEAGLE_HAVE_RTTI
ioTree.push_back(GP::Node(lPrimit, 0));
ioContext.pushCallStack(lNodeIndex);
if(lPrimit->validate(ioContext)) {
unsigned int lSubTreeSize = 1;
bool lGoodInit = true;
for(unsigned int i=0; i<lPrimit->getNumberArguments(); i++) {
unsigned int lArgSubTreeSize =
initConstrainedSubTreeFull(ioTree, inSubTreeDepth-1, ioContext);
if(lArgSubTreeSize == 0) {
for(unsigned int j=1; j<lSubTreeSize; j++) ioTree.pop_back();
lGoodInit = false;
break;
}
lSubTreeSize += lArgSubTreeSize;
}
if(lGoodInit) {
ioContext.popCallStack();
ioTree[lNodeIndex].mSubTreeSize = lSubTreeSize;
return lSubTreeSize;
}
} else {
Beagle_LogDebugM(
ioContext.getSystem().getLogger(),
"initialization", "Beagle::GP::InitFullConstrainedOp",
"Primitive failed validation testing"
);
}
ioContext.popCallStack();
ioTree.pop_back();
}
Beagle_LogDebugM(
ioContext.getSystem().getLogger(),
"initialization", "Beagle::GP::InitFullConstrainedOp",
"Could not correctly initialize this node; backtracking instead."
);
return 0; // Could not initialize this node correctly, backtracking instead.
Beagle_StackTraceEndM("unsigned int GP::InitFullConstrainedOp::initConstrainedSubTreeFull(GP::Tree& ioTree, unsigned int inSubTreeDepth, GP::Context& ioContext) const");
}