void serialise(::libmaus::network::SocketBase * socket) const
{
designators->serialise(socket);
socket->writeMessageInBlocks(longptrs);
socket->writeMessageInBlocks(shortptrs);
socket->writeString(FI.serialise());
}
uint64_t byteSize() const
{
return
designators->byteSize()+
longptrs.byteSize()+
shortptrs.byteSize()+
FI.byteSize();
}
void internalFlush()
{
if ( pathigh != patlow )
{
#if defined(LIBMAUS_FASTX_FASTQBGZFWRITER_PARALLEL)
uint64_t const bcnt = bgzfenc->writeSyncedCount(C.begin(),pc-C.begin());
libmaus::util::UTF8::encodeUTF8(bcnt,*bgzfidxcntoutstr);
libmaus::fastx::FastInterval const FI(patlow,pathigh,0,0,lnumsyms,minlen,maxlen);
#else
std::pair<uint64_t,uint64_t> bcntccnt = bgzfenc->writeSyncedCount(C.begin(),pc-C.begin());
libmaus::fastx::FastInterval const FI(patlow,pathigh,cacc,cacc+bcntccnt.second,lnumsyms,minlen,maxlen);
cacc += bcntccnt.second;
#endif
(*fioutstr) << FI.serialise();
blockcnt += 1;
std::cerr << FI << std::endl;
reset();
patlow = pathigh;
}
}
