/**
* Loads the information contained in non-Spectra (ie, Text or Numeric) axis in the Nexus
* file into the workspace.
* @param local_workspace :: pointer to workspace object
* @param data :: reference to the NeXuS data for the axis
*/
void LoadNexusProcessed::loadNonSpectraAxis(API::MatrixWorkspace_sptr local_workspace, NXData & data)
{
Mantid::API::Axis* axis = local_workspace->getAxis(1);
if ( axis->isNumeric() )
{
NXDouble axisData = data.openNXDouble("axis2");
axisData.load();
for ( int i = 0; i < static_cast<int>(axis->length()); i++ )
{
axis->setValue(i, axisData[i]);
}
}
else if ( axis->isText() )
{
// We must cast the axis object to TextAxis so we may use ->setLabel
Mantid::API::TextAxis* textAxis = dynamic_cast<Mantid::API::TextAxis*>(axis);
NXChar axisData = data.openNXChar("axis2");
axisData.load();
std::string axisLabels = axisData();
// Use boost::tokenizer to split up the input
boost::char_separator<char> sep("\n");
boost::tokenizer<boost::char_separator<char> > tokenizer(axisLabels, sep);
boost::tokenizer<boost::char_separator<char> >::iterator tokIter;
int i = 0;
for ( tokIter = tokenizer.begin(); tokIter != tokenizer.end(); ++tokIter )
{
textAxis->setLabel(i, *tokIter);
++i;
}
}
}
/**
* Creates the output workspace for this algorithm
* @param inputWorkspace A parent workspace to initialize from.
* @return A pointer to the output workspace.
*/
API::MatrixWorkspace_sptr Transpose::createOutputWorkspace(
API::MatrixWorkspace_const_sptr inputWorkspace) {
Mantid::API::Axis *yAxis = getVerticalAxis(inputWorkspace);
const size_t oldNhist = inputWorkspace->getNumberHistograms();
const MantidVec &inX = inputWorkspace->readX(0);
const size_t oldYlength = inputWorkspace->blocksize();
const size_t oldVerticalAxislength = yAxis->length();
// The input Y axis may be binned so the new X data should be too
size_t newNhist(oldYlength), newXsize(oldVerticalAxislength),
newYsize(oldNhist);
MatrixWorkspace_sptr outputWorkspace = WorkspaceFactory::Instance().create(
inputWorkspace, newNhist, newXsize, newYsize);
// Create a new numeric axis for Y the same length as the old X array
// Values come from input X
API::NumericAxis *newYAxis(nullptr);
if (inputWorkspace->isHistogramData()) {
newYAxis = new API::BinEdgeAxis(inX);
} else {
newYAxis = new API::NumericAxis(inX);
}
newYAxis->unit() = inputWorkspace->getAxis(0)->unit();
outputWorkspace->getAxis(0)->unit() = inputWorkspace->getAxis(1)->unit();
outputWorkspace->replaceAxis(1, newYAxis);
setProperty("OutputWorkspace", outputWorkspace);
return outputWorkspace;
}
/**
* Creates the output workspace for this algorithm
* @param inputWorkspace A parent workspace to initialize from.
* @return A pointer to the output workspace.
*/
API::MatrixWorkspace_sptr Transpose::createOutputWorkspace(
API::MatrixWorkspace_const_sptr inputWorkspace) {
Mantid::API::Axis *yAxis = getVerticalAxis(inputWorkspace);
const size_t oldNhist = inputWorkspace->getNumberHistograms();
const auto &inX = inputWorkspace->x(0);
const size_t oldYlength = inputWorkspace->blocksize();
const size_t oldVerticalAxislength = yAxis->length();
// The input Y axis may be binned so the new X data should be too
size_t newNhist(oldYlength), newXsize(oldVerticalAxislength),
newYsize(oldNhist);
MatrixWorkspace_sptr outputWorkspace = inputWorkspace->cloneEmpty();
outputWorkspace->initialize(newNhist, newXsize, newYsize);
outputWorkspace->setTitle(inputWorkspace->getTitle());
outputWorkspace->setComment(inputWorkspace->getComment());
outputWorkspace->copyExperimentInfoFrom(inputWorkspace.get());
outputWorkspace->setYUnit(inputWorkspace->YUnit());
outputWorkspace->setYUnitLabel(inputWorkspace->YUnitLabel());
outputWorkspace->setDistribution(inputWorkspace->isDistribution());
// Create a new numeric axis for Y the same length as the old X array
// Values come from input X
API::NumericAxis *newYAxis(nullptr);
if (inputWorkspace->isHistogramData()) {
newYAxis = new API::BinEdgeAxis(inX.rawData());
} else {
newYAxis = new API::NumericAxis(inX.rawData());
}
newYAxis->unit() = inputWorkspace->getAxis(0)->unit();
outputWorkspace->getAxis(0)->unit() = inputWorkspace->getAxis(1)->unit();
outputWorkspace->replaceAxis(1, newYAxis);
setProperty("OutputWorkspace", outputWorkspace);
return outputWorkspace;
}
/** Checks that the axis stated
* @param value :: The workspace to test
* @return A message for users with negative results, otherwise ""
*/
std::string
SpectraAxisValidator::checkValidity(const MatrixWorkspace_sptr &value) const {
Mantid::API::Axis *axis = value->getAxis(m_axisNumber);
if (axis->isSpectra())
return "";
else
return "A workspace with axis being Spectra Number is required here.";
}
/** Checks that the axis stated
* @param value :: The workspace to test
* @return A message for users with negative results, otherwise ""
*/
std::string
SpectraAxisValidator::checkValidity(const MatrixWorkspace_sptr &value) const {
Mantid::API::Axis *axis;
try {
axis = value->getAxis(m_axisNumber);
} catch (Kernel::Exception::IndexError &) {
return "No axis at index " + std::to_string(m_axisNumber) +
" available in the workspace";
}
if (axis->isSpectra())
return "";
else
return "A workspace with axis being Spectra Number is required here.";
}