ExitCodes main_(int, const char **)
{
//-------------------------------------------------------------
// parameter handling
//-------------------------------------------------------------
String in1 = getStringOption_("in1");
String in2 = getStringOption_("in2");
double acceptable_ratio = getDoubleOption_("ratio");
double acceptable_absdiff = getDoubleOption_("absdiff");
StringList whitelist = getStringList_("whitelist");
StringList raw_matched_whitelist = getStringList_("matched_whitelist");
int verbose_level = getIntOption_("verbose");
int tab_width = getIntOption_("tab_width");
int first_column = getIntOption_("first_column");
// This is for debugging the parsing of whitelist_ from cmdline or ini file. Converting StringList back to String is intentional.
writeDebug_(String("whitelist: ") + String(whitelist) + " (size: " + whitelist.size() + ")", 1);
writeDebug_(String("matched_whitelist: ") + String(raw_matched_whitelist) + " (size: " + raw_matched_whitelist.size() + ")", 1);
OpenMS::FuzzyStringComparator fsc;
std::vector< std::pair<std::string, std::string> > parsed_matched_whitelist;
for (Size i = 0; i < raw_matched_whitelist.size(); i++)
{
// Split each entry at the colon to produce a pair of strings
std::vector<String> tmp;
raw_matched_whitelist[i].split(":", tmp);
if (tmp.size() != 2)
{
throw Exception::IllegalArgument(__FILE__, __LINE__, __PRETTY_FUNCTION__,
String(raw_matched_whitelist[i]) + " does not have the format String1:String2");
}
std::pair<std::string, std::string> tmp_tuple(tmp[0], tmp[1]);
parsed_matched_whitelist.push_back(tmp_tuple);
}
fsc.setAcceptableRelative(acceptable_ratio);
fsc.setAcceptableAbsolute(acceptable_absdiff);
fsc.setWhitelist(whitelist);
fsc.setMatchedWhitelist(parsed_matched_whitelist);
fsc.setVerboseLevel(verbose_level);
fsc.setTabWidth(tab_width);
fsc.setFirstColumn(first_column);
if (fsc.compareFiles(in1, in2))
{
return EXECUTION_OK;
}
else
{
// TODO think about better exit codes.
return PARSE_ERROR;
}
}
ExitCodes main_(int, const char **)
{
//-------------------------------------------------------------
// parameter handling
//-------------------------------------------------------------
String in1 = getStringOption_("in1");
String in2 = getStringOption_("in2");
double acceptable_ratio = getDoubleOption_("ratio");
double acceptable_absdiff = getDoubleOption_("absdiff");
StringList whitelist = getStringList_("whitelist");
int verbose_level = getIntOption_("verbose");
int tab_width = getIntOption_("tab_width");
int first_column = getIntOption_("first_column");
// This is for debugging the parsing of whitelist_ from cmdline or ini file. Converting StringList back to String is intentional.
writeDebug_(String("whitelist: ") + String(whitelist) + " (size: " + whitelist.size() + ")", 1);
OpenMS::FuzzyStringComparator fsc;
fsc.setAcceptableRelative(acceptable_ratio);
fsc.setAcceptableAbsolute(acceptable_absdiff);
fsc.setWhitelist(whitelist);
fsc.setVerboseLevel(verbose_level);
fsc.setTabWidth(tab_width);
fsc.setFirstColumn(first_column);
if (fsc.compareFiles(in1, in2))
{
return EXECUTION_OK;
}
else
{
// TODO think about better exit codes.
return PARSE_ERROR;
}
}
