예제 #1
0
파일: ex1.c 프로젝트: tom-klotz/petsc
int main(int argc,char **argv)
{
  PetscErrorCode ierr;
  PetscInt       i,n = 5;
  PetscInt       getpetsc[]  = {0,3,4},getapp[]  = {2,1,9,7};
  PetscInt       getpetsc1[] = {0,3,4},getapp1[] = {2,1,9,7};
  PetscInt       getpetsc2[] = {0,3,4},getapp2[] = {2,1,9,7};
  PetscInt       getpetsc3[] = {0,3,4},getapp3[] = {2,1,9,7};
  PetscInt       getpetsc4[] = {0,3,4},getapp4[] = {2,1,9,7};
  PetscMPIInt    rank,size;
  IS             ispetsc,isapp;
  AO             ao;
  const PetscInt *app;

  ierr = PetscInitialize(&argc,&argv,(char*)0,help);if (ierr) return ierr;
  ierr = PetscOptionsGetInt(NULL,NULL,"-n",&n,NULL);CHKERRQ(ierr);
  ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr);
  ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr);

  /* create the index sets */
  ierr = ISCreateStride(PETSC_COMM_WORLD,n,rank,size,&isapp);CHKERRQ(ierr);
  ierr = ISCreateStride(PETSC_COMM_WORLD,n,n*rank,1,&ispetsc);CHKERRQ(ierr); /* natural numbering */

  /* create the application ordering */
  ierr = AOCreateBasicIS(isapp,ispetsc,&ao);CHKERRQ(ierr);
  ierr = AOView(ao,PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);

  ierr = AOPetscToApplication(ao,4,getapp);CHKERRQ(ierr);
  ierr = AOApplicationToPetsc(ao,3,getpetsc);CHKERRQ(ierr);

  ierr = PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] 2,1,9,7 PetscToApplication %D %D %D %D\n",rank,getapp[0],getapp[1],getapp[2],getapp[3]);CHKERRQ(ierr);
  ierr = PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] 0,3,4 ApplicationToPetsc %D %D %D\n",rank,getpetsc[0],getpetsc[1],getpetsc[2]);CHKERRQ(ierr);
  ierr = PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT);CHKERRQ(ierr);
  ierr = AODestroy(&ao);CHKERRQ(ierr);

  /* test MemoryScalable ao */
  /*-------------------------*/
  ierr = PetscPrintf(PETSC_COMM_WORLD,"\nTest AOCreateMemoryScalable: \n");CHKERRQ(ierr);
  ierr = AOCreateMemoryScalableIS(isapp,ispetsc,&ao);CHKERRQ(ierr);CHKERRQ(ierr);
  ierr = AOView(ao,PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);

  ierr = AOPetscToApplication(ao,4,getapp1);CHKERRQ(ierr);
  ierr = AOApplicationToPetsc(ao,3,getpetsc1);CHKERRQ(ierr);

  /* Check accuracy */;
  for (i=0; i<4; i++) {
    if (getapp1[i] != getapp[i]) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"getapp1 %d != getapp %d",getapp1[i],getapp[i]);
  }
  for (i=0; i<3; i++) {
    if (getpetsc1[i] != getpetsc[i]) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"getpetsc1 %d != getpetsc %d",getpetsc1[i],getpetsc[i]);
  }

  ierr = AODestroy(&ao);CHKERRQ(ierr);

  /* test MemoryScalable ao: ispetsc = NULL */
  /*-----------------------------------------------*/
  ierr = PetscPrintf(PETSC_COMM_WORLD,"\nTest AOCreateMemoryScalable with ispetsc=NULL:\n");CHKERRQ(ierr);
  ierr = AOCreateMemoryScalableIS(isapp,NULL,&ao);CHKERRQ(ierr);CHKERRQ(ierr);

  ierr = AOView(ao,PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);

  ierr = AOPetscToApplication(ao,4,getapp2);CHKERRQ(ierr);
  ierr = AOApplicationToPetsc(ao,3,getpetsc2);CHKERRQ(ierr);

  /* Check accuracy */;
  for (i=0; i<4; i++) {
    if (getapp2[i] != getapp[i]) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"getapp2 %d != getapp %d",getapp2[i],getapp[i]);
  }
  for (i=0; i<3; i++) {
    if (getpetsc2[i] != getpetsc[i]) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"getpetsc2 %d != getpetsc %d",getpetsc2[i],getpetsc[i]);
  }
  ierr = AODestroy(&ao);CHKERRQ(ierr);

  /* test AOCreateMemoryScalable() ao: */
  ierr = ISGetIndices(isapp,&app);CHKERRQ(ierr);
  ierr = AOCreateMemoryScalable(PETSC_COMM_WORLD,n,app,NULL,&ao);CHKERRQ(ierr);
  ierr = ISRestoreIndices(isapp,&app);CHKERRQ(ierr);

  ierr = AOPetscToApplication(ao,4,getapp4);CHKERRQ(ierr);
  ierr = AOApplicationToPetsc(ao,3,getpetsc4);CHKERRQ(ierr);

  /* Check accuracy */;
  for (i=0; i<4; i++) {
    if (getapp4[i] != getapp[i]) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"getapp4 %d != getapp %d",getapp4[i],getapp[i]);
  }
  for (i=0; i<3; i++) {
    if (getpetsc4[i] != getpetsc[i]) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"getpetsc4 %d != getpetsc %d",getpetsc4[i],getpetsc[i]);
  }
  ierr = AODestroy(&ao);CHKERRQ(ierr);

  /* test general API */
  /*------------------*/
  ierr = PetscPrintf(PETSC_COMM_WORLD,"\nTest general API: \n");CHKERRQ(ierr);
  ierr = AOCreate(PETSC_COMM_WORLD,&ao);CHKERRQ(ierr);
  ierr = AOSetIS(ao,isapp,ispetsc);CHKERRQ(ierr);
  ierr = AOSetType(ao,AOMEMORYSCALABLE);CHKERRQ(ierr);
  ierr = AOSetFromOptions(ao);CHKERRQ(ierr);

  /* ispetsc and isapp are nolonger used. */
  ierr = ISDestroy(&ispetsc);CHKERRQ(ierr);
  ierr = ISDestroy(&isapp);CHKERRQ(ierr);

  ierr = AOPetscToApplication(ao,4,getapp3);CHKERRQ(ierr);
  ierr = AOApplicationToPetsc(ao,3,getpetsc3);CHKERRQ(ierr);

  ierr = PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] 2,1,9,7 PetscToApplication %D %D %D %D\n",rank,getapp3[0],getapp3[1],getapp3[2],getapp3[3]);CHKERRQ(ierr);
  ierr = PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] 0,3,4 ApplicationToPetsc %D %D %D\n",rank,getpetsc3[0],getpetsc3[1],getpetsc3[2]);CHKERRQ(ierr);
  ierr = PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT);CHKERRQ(ierr);

  /* Check accuracy */;
  for (i=0; i<4; i++) {
    if (getapp3[i] != getapp[i]) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"getapp3 %d != getapp %d",getapp3[i],getapp[i]);
  }
  for (i=0; i<3; i++) {
    if (getpetsc3[i] != getpetsc[i]) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"getpetsc3 %d != getpetsc %d",getpetsc3[i],getpetsc[i]);
  }

  ierr = AODestroy(&ao);CHKERRQ(ierr);
  ierr = PetscFinalize();
  return ierr;
}
예제 #2
0
파일: ex6.c 프로젝트: Kun-Qu/petsc
int main(int argc,char **argv)
{
  PetscMPIInt    rank;
  PetscInt       M = 3,N = 5,P=3,s=1,w=2,nloc,l,i,j,k,kk,m = PETSC_DECIDE,n = PETSC_DECIDE,p = PETSC_DECIDE;
  PetscErrorCode ierr;
  PetscInt       Xs,Xm,Ys,Ym,Zs,Zm,iloc,*ltog,*iglobal;
  PetscInt       *lx = PETSC_NULL,*ly = PETSC_NULL,*lz = PETSC_NULL;
  PetscBool      test_order = PETSC_FALSE;
  DM             da;
  PetscViewer    viewer;
  Vec            local,global;
  PetscScalar    value;
  DMDABoundaryType bx = DMDA_BOUNDARY_NONE,by = DMDA_BOUNDARY_NONE,bz = DMDA_BOUNDARY_NONE;
  DMDAStencilType  stencil_type = DMDA_STENCIL_BOX;
  AO             ao;
  PetscBool      flg = PETSC_FALSE;

  ierr = PetscInitialize(&argc,&argv,(char*)0,help);CHKERRQ(ierr); 
  ierr = PetscViewerDrawOpen(PETSC_COMM_WORLD,0,"",300,0,400,300,&viewer);CHKERRQ(ierr);

  /* Read options */
  ierr = PetscOptionsGetInt(PETSC_NULL,"-NX",&M,PETSC_NULL);CHKERRQ(ierr);
  ierr = PetscOptionsGetInt(PETSC_NULL,"-NY",&N,PETSC_NULL);CHKERRQ(ierr);
  ierr = PetscOptionsGetInt(PETSC_NULL,"-NZ",&P,PETSC_NULL);CHKERRQ(ierr);
  ierr = PetscOptionsGetInt(PETSC_NULL,"-m",&m,PETSC_NULL);CHKERRQ(ierr);
  ierr = PetscOptionsGetInt(PETSC_NULL,"-n",&n,PETSC_NULL);CHKERRQ(ierr);
  ierr = PetscOptionsGetInt(PETSC_NULL,"-p",&p,PETSC_NULL);CHKERRQ(ierr);
  ierr = PetscOptionsGetInt(PETSC_NULL,"-s",&s,PETSC_NULL);CHKERRQ(ierr);
  ierr = PetscOptionsGetInt(PETSC_NULL,"-w",&w,PETSC_NULL);CHKERRQ(ierr);
  flg = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-star",&flg,PETSC_NULL);CHKERRQ(ierr); 
  if (flg) stencil_type =  DMDA_STENCIL_STAR;
  flg = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-box",&flg,PETSC_NULL);CHKERRQ(ierr); 
  if (flg) stencil_type =  DMDA_STENCIL_BOX;

  flg = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-xperiodic",&flg,PETSC_NULL);CHKERRQ(ierr); 
  if (flg) bx = DMDA_BOUNDARY_PERIODIC;
  flg = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-xghosted",&flg,PETSC_NULL);CHKERRQ(ierr); 
  if (flg) bx = DMDA_BOUNDARY_GHOSTED;
  flg = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-xnonghosted",&flg,PETSC_NULL);CHKERRQ(ierr); 

  flg = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-yperiodic",&flg,PETSC_NULL);CHKERRQ(ierr); 
  if (flg) by = DMDA_BOUNDARY_PERIODIC;
  flg = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-yghosted",&flg,PETSC_NULL);CHKERRQ(ierr); 
  if (flg) by = DMDA_BOUNDARY_GHOSTED;
  flg = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-ynonghosted",&flg,PETSC_NULL);CHKERRQ(ierr); 

  flg = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-zperiodic",&flg,PETSC_NULL);CHKERRQ(ierr); 
  if (flg) bz = DMDA_BOUNDARY_PERIODIC;
  flg = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-zghosted",&flg,PETSC_NULL);CHKERRQ(ierr); 
  if (flg) bz = DMDA_BOUNDARY_GHOSTED;
  flg = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-znonghosted",&flg,PETSC_NULL);CHKERRQ(ierr); 

  ierr = PetscOptionsGetBool(PETSC_NULL,"-testorder",&test_order,PETSC_NULL);CHKERRQ(ierr);

  flg  = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-distribute",&flg,PETSC_NULL);CHKERRQ(ierr);
  if (flg) {
    if (m == PETSC_DECIDE) SETERRQ(PETSC_COMM_WORLD,1,"Must set -m option with -distribute option");
    ierr = PetscMalloc(m*sizeof(PetscInt),&lx);CHKERRQ(ierr);
    for (i=0; i<m-1; i++) { lx[i] = 4;}
    lx[m-1] = M - 4*(m-1);
    if (n == PETSC_DECIDE) SETERRQ(PETSC_COMM_WORLD,1,"Must set -n option with -distribute option");
    ierr = PetscMalloc(n*sizeof(PetscInt),&ly);CHKERRQ(ierr);
    for (i=0; i<n-1; i++) { ly[i] = 2;}
    ly[n-1] = N - 2*(n-1);
    if (p == PETSC_DECIDE) SETERRQ(PETSC_COMM_WORLD,1,"Must set -p option with -distribute option");
    ierr = PetscMalloc(p*sizeof(PetscInt),&lz);CHKERRQ(ierr);
    for (i=0; i<p-1; i++) { lz[i] = 2;}
    lz[p-1] = P - 2*(p-1);
  }

  /* Create distributed array and get vectors */
  ierr = DMDACreate3d(PETSC_COMM_WORLD,bx,by,bz,stencil_type,M,N,P,m,n,p,w,s,lx,ly,lz,&da);CHKERRQ(ierr);
  ierr = PetscFree(lx);CHKERRQ(ierr);
  ierr = PetscFree(ly);CHKERRQ(ierr);
  ierr = PetscFree(lz);CHKERRQ(ierr);
  ierr = DMView(da,viewer);CHKERRQ(ierr);
  ierr = DMCreateGlobalVector(da,&global);CHKERRQ(ierr);
  ierr = DMCreateLocalVector(da,&local);CHKERRQ(ierr);

  /* Set global vector; send ghost points to local vectors */
  value = 1;
  ierr = VecSet(global,value);CHKERRQ(ierr);
  ierr = DMGlobalToLocalBegin(da,global,INSERT_VALUES,local);CHKERRQ(ierr);
  ierr = DMGlobalToLocalEnd(da,global,INSERT_VALUES,local);CHKERRQ(ierr);

  /* Scale local vectors according to processor rank; pass to global vector */
  ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr);
  value = rank;
  ierr = VecScale(local,value);CHKERRQ(ierr);
  ierr = DMLocalToGlobalBegin(da,local,INSERT_VALUES,global);CHKERRQ(ierr);
  ierr = DMLocalToGlobalEnd(da,local,INSERT_VALUES,global);CHKERRQ(ierr);

  if (!test_order) { /* turn off printing when testing ordering mappings */
    if (M*N*P<40) {
      ierr = PetscPrintf(PETSC_COMM_WORLD,"\nGlobal Vector:\n");CHKERRQ(ierr);
      ierr = VecView(global,PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 
      ierr = PetscPrintf(PETSC_COMM_WORLD,"\n");CHKERRQ(ierr);
    }
  }

  /* Send ghost points to local vectors */
  ierr = DMGlobalToLocalBegin(da,global,INSERT_VALUES,local);CHKERRQ(ierr);
  ierr = DMGlobalToLocalEnd(da,global,INSERT_VALUES,local);CHKERRQ(ierr);

  flg  = PETSC_FALSE;
  ierr = PetscOptionsGetBool(PETSC_NULL,"-local_print",&flg,PETSC_NULL);CHKERRQ(ierr);
  if (flg) {
    PetscViewer sviewer;
    ierr = PetscSynchronizedPrintf(PETSC_COMM_WORLD,"\nLocal Vector: processor %d\n",rank);CHKERRQ(ierr);
    ierr = PetscViewerGetSingleton(PETSC_VIEWER_STDOUT_WORLD,&sviewer);CHKERRQ(ierr);
    ierr = VecView(local,sviewer);CHKERRQ(ierr); 
    ierr = PetscViewerRestoreSingleton(PETSC_VIEWER_STDOUT_WORLD,&sviewer);CHKERRQ(ierr);
    ierr = PetscSynchronizedFlush(PETSC_COMM_WORLD);CHKERRQ(ierr);
  }

  /* Tests mappings betweeen application/PETSc orderings */
  if (test_order) {
    ierr = DMDAGetGhostCorners(da,&Xs,&Ys,&Zs,&Xm,&Ym,&Zm);CHKERRQ(ierr);
    ierr = DMDAGetGlobalIndices(da,&nloc,&ltog);CHKERRQ(ierr);
    ierr = DMDAGetAO(da,&ao);CHKERRQ(ierr);
    /* ierr = AOView(ao,PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); */
    ierr = PetscMalloc(nloc*sizeof(PetscInt),&iglobal);CHKERRQ(ierr);

    /* Set iglobal to be global indices for each processor's local and ghost nodes,
       using the DMDA ordering of grid points */
    kk = 0;
    for (k=Zs; k<Zs+Zm; k++) {
      for (j=Ys; j<Ys+Ym; j++) {
        for (i=Xs; i<Xs+Xm; i++) {
          iloc = w*((k-Zs)*Xm*Ym + (j-Ys)*Xm + i-Xs); 
          for (l=0; l<w; l++) {
            iglobal[kk++] = ltog[iloc+l];
          }
        }
      }
    } 

    /* Map this to the application ordering (which for DMDAs is just the natural ordering
       that would be used for 1 processor, numbering most rapidly by x, then y, then z) */
    ierr = AOPetscToApplication(ao,nloc,iglobal);CHKERRQ(ierr); 

    /* Then map the application ordering back to the PETSc DMDA ordering */
    ierr = AOApplicationToPetsc(ao,nloc,iglobal);CHKERRQ(ierr); 

    /* Verify the mappings */
    kk=0;
    for (k=Zs; k<Zs+Zm; k++) {
      for (j=Ys; j<Ys+Ym; j++) {
        for (i=Xs; i<Xs+Xm; i++) {
          iloc = w*((k-Zs)*Xm*Ym + (j-Ys)*Xm + i-Xs); 
          for (l=0; l<w; l++) {
            if (iglobal[kk] != ltog[iloc+l]) {
              ierr = PetscPrintf(MPI_COMM_WORLD,"[%D] Problem with mapping: z=%D, j=%D, i=%D, l=%D, petsc1=%D, petsc2=%D\n",
                      rank,k,j,i,l,ltog[iloc+l],iglobal[kk]);
            }
            kk++;
          }
        }
      }
    }
    ierr = PetscFree(iglobal);CHKERRQ(ierr);
  } 

  /* Free memory */
  ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
  ierr = VecDestroy(&local);CHKERRQ(ierr);
  ierr = VecDestroy(&global);CHKERRQ(ierr);
  ierr = DMDestroy(&da);CHKERRQ(ierr);
  ierr = PetscFinalize();
  return 0;
}
예제 #3
0
	int MeshData::get_PETScToApp_Ordering(int n) const{
		AOPetscToApplication(ao,1,&n);
		return n;
	}