int DoOutput(DMMG *dmmg, int n_plot)
/*---------------------------------------------------------------------*/
{
AppCtx *user = (AppCtx*)dmmg[0]->user;
Parameter *param;
int ierr;
char filename[FNAME_LENGTH];
PetscViewer viewer;
DA da;
ierr = PetscBagGetData(user->bag,(void**)¶m);
CHKERRQ(ierr);
da = DMMGGetDA(dmmg);
if (param->output_to_file) { /* send output to binary file */
/* generate filename for time t */
sprintf(filename,"%s_%3.3d",param->output_filename,n_plot);
ierr = PetscPrintf(PETSC_COMM_WORLD,"Generating output: time t = %g, ",param->t);
ierr = PetscPrintf(PETSC_COMM_WORLD,"file = \"%s\"\n",filename);
/* make output files */
ierr = PetscViewerBinaryMatlabOpen(PETSC_COMM_WORLD,filename,&viewer);
CHKERRQ(ierr);
ierr = PetscViewerBinaryMatlabOutputBag(viewer,"par",user->bag);
CHKERRQ(ierr);
ierr = DASetFieldNames("u","v","phi",da);
CHKERRQ(ierr);
ierr = PetscViewerBinaryMatlabOutputVecDA(viewer,"field",DMMGGetx(dmmg),da);
CHKERRQ(ierr);
ierr = PetscViewerBinaryMatlabDestroy(viewer);
CHKERRQ(ierr);
}
return 0;
}
/*
Setup for the custom preconditioner
*/
PetscErrorCode MyPCSetUp(PC pc)
{
AppCtx *app;
PetscErrorCode ierr;
DA da;
PetscFunctionBegin;
ierr = PCShellGetContext(pc,(void**)&app);
CHKERRQ(ierr);
/* create the linear solver for the Neutron diffusion */
ierr = DMMGCreate(app->comm,1,0,&app->fdmmg);
CHKERRQ(ierr);
ierr = DMMGSetOptionsPrefix(app->fdmmg,"phi_");
CHKERRQ(ierr);
ierr = DMMGSetUser(app->fdmmg,0,app);
CHKERRQ(ierr);
ierr = DACreate2d(app->comm,DA_NONPERIODIC,DA_STENCIL_STAR,app->nxv,app->nyvf,PETSC_DETERMINE,1,1,1,0,0,&da);
CHKERRQ(ierr);
ierr = DMMGSetDM(app->fdmmg,(DM)da);
CHKERRQ(ierr);
ierr = DMMGSetKSP(app->fdmmg,PETSC_NULL,MyFormMatrix);
CHKERRQ(ierr);
app->dx = DMMGGetRHS(app->fdmmg);
app->dy = DMMGGetx(app->fdmmg);
ierr = VecDuplicate(app->dy,&app->c);
CHKERRQ(ierr);
ierr = DADestroy(da);
CHKERRQ(ierr);
PetscFunctionReturn(0);
}
EXTERN_C_BEGIN
void PETSC_STDCALL dmmggetx_(DMMG **dmmg,Vec *x,PetscErrorCode *ierr)
{
*ierr = 0;
*x = DMMGGetx(*dmmg);
}
real ImposeLaplaceBoundary(State *BHD, Vec g, Vec b, Vec x, real zpad, int *iter)
{
real mpi_start, mpi_stop;
Vec sol;
/* computation time measurement start point */
MPI_Barrier( PETSC_COMM_WORLD);
mpi_start = MPI_Wtime();
/* Get boundary of g */
CopyBoundary(BHD, g, BHD->pre, zpad);
VecSet(x, 0.0);
/* Solve Laplace */
DMMGSolve(BHD->dmmg);
sol = DMMGGetx(BHD->dmmg);
VecCopy(sol, x);
/* subtract solution from g */
VecAXPY(g, -1.0, x);
/* computation time measurement stop point */
MPI_Barrier( PETSC_COMM_WORLD);
mpi_stop = MPI_Wtime();
return mpi_stop-mpi_start;
/* VecView(b,PETSC_VIEWER_STDERR_WORLD); */
/* exit(1); */
}
int CalcSolnNorms(DMMG *dmmg, PetscReal norms[])
/*---------------------------------------------------------------------*/
{
Vec x;
int ierr;
x = DMMGGetx(dmmg);
ierr = VecNorm(x, NORM_1, &(norms[0]));
ierr = VecNorm(x, NORM_2, &(norms[1]));
ierr = VecNorm(x, NORM_INFINITY, &(norms[2]));
return 0;
}
int Initialize(DMMG *dmmg)
/* ------------------------------------------------------------------- */
{
AppCtx *user = (AppCtx*)dmmg[0]->user;
Parameter *param;
DA da;
PetscReal PI = 3.14159265358979323846;
PetscReal sigma,xc,zc;
PetscReal dx=user->grid->dx,dz=user->grid->dz;
int i,j,ierr,is,js,im,jm;
Field **x;
ierr = PetscBagGetData(user->bag,(void**)¶m);
CHKERRQ(ierr);
sigma=param->sigma;
xc=param->xctr;
zc=param->zctr;
/* Get the DA and grid */
da = (DA)(dmmg[0]->dm);
ierr = DAGetCorners(da,&is,&js,PETSC_NULL,&im,&jm,PETSC_NULL);
CHKERRQ(ierr);
ierr = DAVecGetArray(da,user->Xold,(void**)&x);
CHKERRQ(ierr);
for (j=js; j<js+jm; j++) {
for (i=is; i<is+im; i++) {
if (param->flow_type == SHEAR_CELL) {
x[j][i].u = -sin(PI*i*dx)*cos(PI*j*dz)/dx;
x[j][i].w = sin(PI*j*dz)*cos(PI*i*dx)/dz;
} else {
x[j][i].u = 0.0;
x[j][i].w = -1.0/dz;
}
x[j][i].phi = 100*exp(-0.5*((i*dx-xc)*(i*dx-xc)+(j*dz-zc)*(j*dz-zc))/sigma/sigma);
}
}
/* restore the grid to it's vector */
ierr = DAVecRestoreArray(da,user->Xold,(void**)&x);
CHKERRQ(ierr);
ierr = VecCopy(user->Xold, DMMGGetx(dmmg));
CHKERRQ(ierr);
return 0;
}
int main(int argc,char **argv)
{
DMMG *dmmg; /* multilevel grid structure */
PetscErrorCode ierr;
DA da;
AppCtx app;
PC pc;
KSP ksp;
PetscTruth isshell;
PetscViewer v1;
PetscInitialize(&argc,&argv,(char *)0,help);
PreLoadBegin(PETSC_TRUE,"SetUp");
app.comm = PETSC_COMM_WORLD;
app.nxv = 6;
app.nyvf = 3;
app.nyv = app.nyvf + 2;
ierr = PetscOptionsBegin(app.comm,PETSC_NULL,"Options for Grid Sizes",PETSC_NULL);
ierr = PetscOptionsInt("-nxv","Grid spacing in X direction",PETSC_NULL,app.nxv,&app.nxv,PETSC_NULL);
CHKERRQ(ierr);
ierr = PetscOptionsInt("-nyvf","Grid spacing in Y direction of Fuel",PETSC_NULL,app.nyvf,&app.nyvf,PETSC_NULL);
CHKERRQ(ierr);
ierr = PetscOptionsInt("-nyv","Total Grid spacing in Y direction of",PETSC_NULL,app.nyv,&app.nyv,PETSC_NULL);
CHKERRQ(ierr);
ierr = PetscOptionsEnd();
ierr = PetscViewerDrawOpen(app.comm,PETSC_NULL,"",-1,-1,-1,-1,&v1);
CHKERRQ(ierr);
/*
Create the DMComposite object to manage the three grids/physics.
We use a 1d decomposition along the y direction (since one of the grids is 1d).
*/
ierr = DMCompositeCreate(app.comm,&app.pack);
CHKERRQ(ierr);
/* 6 fluid unknowns, 3 ghost points on each end for either periodicity or simply boundary conditions */
ierr = DACreate1d(app.comm,DA_XPERIODIC,app.nxv,6,3,0,&da);
CHKERRQ(ierr);
ierr = DASetFieldName(da,0,"prss");
CHKERRQ(ierr);
ierr = DASetFieldName(da,1,"ergg");
CHKERRQ(ierr);
ierr = DASetFieldName(da,2,"ergf");
CHKERRQ(ierr);
ierr = DASetFieldName(da,3,"alfg");
CHKERRQ(ierr);
ierr = DASetFieldName(da,4,"velg");
CHKERRQ(ierr);
ierr = DASetFieldName(da,5,"velf");
CHKERRQ(ierr);
ierr = DMCompositeAddDM(app.pack,(DM)da);
CHKERRQ(ierr);
ierr = DADestroy(da);
CHKERRQ(ierr);
ierr = DACreate2d(app.comm,DA_YPERIODIC,DA_STENCIL_STAR,app.nxv,app.nyv,PETSC_DETERMINE,1,1,1,0,0,&da);
CHKERRQ(ierr);
ierr = DASetFieldName(da,0,"Tempature");
CHKERRQ(ierr);
ierr = DMCompositeAddDM(app.pack,(DM)da);
CHKERRQ(ierr);
ierr = DADestroy(da);
CHKERRQ(ierr);
ierr = DACreate2d(app.comm,DA_XYPERIODIC,DA_STENCIL_STAR,app.nxv,app.nyvf,PETSC_DETERMINE,1,2,1,0,0,&da);
CHKERRQ(ierr);
ierr = DASetFieldName(da,0,"Phi");
CHKERRQ(ierr);
ierr = DASetFieldName(da,1,"Pre");
CHKERRQ(ierr);
ierr = DMCompositeAddDM(app.pack,(DM)da);
CHKERRQ(ierr);
ierr = DADestroy(da);
CHKERRQ(ierr);
app.pri = 1.0135e+5;
app.ugi = 2.5065e+6;
app.ufi = 4.1894e+5;
app.agi = 1.00e-1;
app.vgi = 1.0e-1 ;
app.vfi = 1.0e-1;
app.prin = 1.0135e+5;
app.ugin = 2.5065e+6;
app.ufin = 4.1894e+5;
app.agin = 1.00e-1;
app.vgin = 1.0e-1 ;
app.vfin = 1.0e-1;
app.prout = 1.0135e+5;
app.ugout = 2.5065e+6;
app.ufout = 4.1894e+5;
app.agout = 3.0e-1;
app.twi = 373.15e+0;
app.phii = 1.0e+0;
app.prei = 1.0e-5;
/*
Create the solver object and attach the grid/physics info
*/
ierr = DMMGCreate(app.comm,1,0,&dmmg);
CHKERRQ(ierr);
ierr = DMMGSetDM(dmmg,(DM)app.pack);
CHKERRQ(ierr);
ierr = DMMGSetUser(dmmg,0,&app);
CHKERRQ(ierr);
ierr = DMMGSetISColoringType(dmmg,IS_COLORING_GLOBAL);
CHKERRQ(ierr);
CHKMEMQ;
ierr = DMMGSetInitialGuess(dmmg,FormInitialGuess);
CHKERRQ(ierr);
ierr = DMMGSetSNES(dmmg,FormFunction,0);
CHKERRQ(ierr);
ierr = DMMGSetFromOptions(dmmg);
CHKERRQ(ierr);
/* Supply custom shell preconditioner if requested */
ierr = SNESGetKSP(DMMGGetSNES(dmmg),&ksp);
CHKERRQ(ierr);
ierr = KSPGetPC(ksp,&pc);
CHKERRQ(ierr);
ierr = PetscTypeCompare((PetscObject)pc,PCSHELL,&isshell);
CHKERRQ(ierr);
if (isshell) {
ierr = PCShellSetContext(pc,&app);
CHKERRQ(ierr);
ierr = PCShellSetSetUp(pc,MyPCSetUp);
CHKERRQ(ierr);
ierr = PCShellSetApply(pc,MyPCApply);
CHKERRQ(ierr);
ierr = PCShellSetDestroy(pc,MyPCDestroy);
CHKERRQ(ierr);
}
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solve the nonlinear system
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
PreLoadStage("Solve");
ierr = DMMGSolve(dmmg);
CHKERRQ(ierr);
ierr = VecView(DMMGGetx(dmmg),v1);
CHKERRQ(ierr);
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Free work space. All PETSc objects should be destroyed when they
are no longer needed.
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
ierr = PetscViewerDestroy(v1);
CHKERRQ(ierr);
ierr = DMCompositeDestroy(app.pack);
CHKERRQ(ierr);
ierr = DMMGDestroy(dmmg);
CHKERRQ(ierr);
PreLoadEnd();
ierr = PetscFinalize();
CHKERRQ(ierr);
return 0;
}
/*
Visualize solutions
*/
PetscErrorCode MySolutionView(MPI_Comm comm,PetscInt phy_num,void *ctx)
{
PetscErrorCode ierr;
AppCtx *user = (AppCtx*)ctx;
DMMG *dmmg = user->dmmg;
DA da=DMMGGetDA(dmmg);
Field **x = user->x;
Field1 **x1 = user->x1;
PetscInt i,j,mx,xs,ys,xm,ym;
PetscMPIInt size;
PetscFunctionBegin;
ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr);
ierr = DAGetCorners(da,&xs,&ys,PETSC_NULL,&xm,&ym,PETSC_NULL);CHKERRQ(ierr);
switch (phy_num){
case 0:
if (size == 1){
ierr = PetscPrintf(PETSC_COMM_SELF,"Original Physics %d U,V,Omega,Temp: \n",phy_num);
ierr = PetscPrintf(PETSC_COMM_SELF,"-----------------------------------\n");
for (j=ys; j<ys+ym; j++) {
for (i=xs; i<xs+xm; i++) {
ierr = PetscPrintf(PETSC_COMM_SELF,"x[%d,%d] = %g, %g, %g, %g\n",j,i,x[j][i].u,x[j][i].v,x[j][i].omega,x[j][i].temp);
}
}
}
break;
case 1:
if (size == 1){
ierr = PetscPrintf(PETSC_COMM_SELF,"SubPhysics %d: U,V,Omega: \n",phy_num);
ierr = PetscPrintf(PETSC_COMM_SELF,"------------------------\n");
DMMG *dmmg1=user->dmmg1;
Vec solu_true = DMMGGetx(dmmg1);
DA da=DMMGGetDA(dmmg1);
Field1 **x1;
ierr = DAVecGetArray(da,solu_true,&x1);CHKERRQ(ierr);
for (j=ys; j<ys+ym; j++) {
for (i=xs; i<xs+xm; i++) {
ierr = PetscPrintf(PETSC_COMM_SELF,"x[%d,%d] = %g, %g, %g\n",j,i,x1[j][i].u,x1[j][i].v,x1[j][i].omega);
}
}
ierr = DAVecRestoreArray(da,solu_true,&x1);CHKERRQ(ierr);
}
break;
case 2:
if (size == 1){
ierr = PetscPrintf(PETSC_COMM_SELF,"SubPhysics %d: Temperature: \n",phy_num);
ierr = PetscPrintf(PETSC_COMM_SELF,"--------------------------\n");
DMMG *dmmg2=user->dmmg2;
Vec solu_true = DMMGGetx(dmmg2);
DA da=DMMGGetDA(dmmg2);
Field2 **x2;
ierr = DAVecGetArray(da,solu_true,&x2);CHKERRQ(ierr);
for (j=ys; j<ys+ym; j++) {
for (i=xs; i<xs+xm; i++) {
ierr = PetscPrintf(PETSC_COMM_SELF,"x[%d,%d] = %g\n",j,i,x2[j][i].temp);
}
}
ierr = DAVecRestoreArray(da,solu_true,&x2);CHKERRQ(ierr);
}
break;
default:
if (size == 1){
DMMG *dmmg_comp=user->dmmg_comp;
DA da1,da2,da=DMMGGetDA(dmmg);
Vec X1,X2,solu_true = DMMGGetx(dmmg);
Field **x;
Field1 **x1;
Field2 **x2;
DMComposite dm = (DMComposite)(*dmmg_comp)->dm;
PetscReal err,err_tmp;
if (phy_num == 3){
ierr = PetscPrintf(PETSC_COMM_SELF,"Composite physics %d, U,V,Omega,Temp: \n",phy_num);
ierr = PetscPrintf(PETSC_COMM_SELF,"------------------------------------\n");
ierr = PetscPrintf(PETSC_COMM_SELF,"Composite physics, U,V,Omega,Temp: \n");CHKERRQ(ierr);
}
ierr = DAVecGetArray(da,solu_true,&x);CHKERRQ(ierr);
ierr = DMCompositeGetEntries(dm,&da1,&da2);CHKERRQ(ierr);
ierr = DMCompositeGetLocalVectors(dm,&X1,&X2);CHKERRQ(ierr);
ierr = DAVecGetArray(da1,X1,(void**)&x1);CHKERRQ(ierr);
ierr = DAVecGetArray(da2,X2,(void**)&x2);CHKERRQ(ierr);
err = 0.0;
for (j=ys; j<ys+ym; j++) {
for (i=xs; i<xs+xm; i++) {
err_tmp = PetscAbs(x[j][i].u-x1[j][i].u) + PetscAbs(x[j][i].v-x1[j][i].v) + PetscAbs(x[j][i].omega-x1[j][i].omega);
err_tmp += PetscAbs(x[j][i].temp-x2[j][i].temp);
if (err < err_tmp) err = err_tmp;
if (phy_num == 3){
ierr = PetscPrintf(PETSC_COMM_SELF,"x[%d,%d] = %g, %g, %g, %g\n",j,i,x1[j][i].u,x1[j][i].v,x1[j][i].omega,x2[j][i].temp);
}
}
}
ierr = PetscPrintf(PETSC_COMM_SELF,"|solu - solu_comp| = %g\n",err);CHKERRQ(ierr);
ierr = DAVecRestoreArray(da1,X1,(void**)&x1);CHKERRQ(ierr);
ierr = DAVecRestoreArray(da2,X2,(void**)&x2);CHKERRQ(ierr);
ierr = DMCompositeRestoreLocalVectors(dm,&X1,&X2);CHKERRQ(ierr);
ierr = DAVecRestoreArray(da,solu_true,&x);CHKERRQ(ierr);
}
}
PetscFunctionReturn(0);
}
int main(int argc,char **argv)
{
DMMG *dmmg_comp; /* multilevel grid structure */
AppCtx user; /* user-defined work context */
PetscInt mx,my,its,max_its,i;
PetscErrorCode ierr;
MPI_Comm comm;
SNES snes;
DA da1,da2;
DMComposite pack;
DMMG *dmmg1,*dmmg2;
PetscTruth SolveSubPhysics=PETSC_FALSE,GaussSeidel=PETSC_TRUE,Jacobi=PETSC_FALSE;
Vec X1,X1_local,X2,X2_local;
PetscViewer viewer;
PetscInitialize(&argc,&argv,(char *)0,help);
comm = PETSC_COMM_WORLD;
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Create user context, set problem data, create vector data structures.
Also, compute the initial guess.
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Setup Physics 1:
- Lap(U) - Grad_y(Omega) = 0
- Lap(V) + Grad_x(Omega) = 0
- Lap(Omega) + Div([U*Omega,V*Omega]) - GR*Grad_x(T) = 0
where T is given by the given x.temp
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
ierr = DACreate2d(comm,DA_NONPERIODIC,DA_STENCIL_STAR,-4,-4,PETSC_DECIDE,PETSC_DECIDE,3,1,0,0,&da1);CHKERRQ(ierr);
ierr = DASetFieldName(da1,0,"x-velocity");CHKERRQ(ierr);
ierr = DASetFieldName(da1,1,"y-velocity");CHKERRQ(ierr);
ierr = DASetFieldName(da1,2,"Omega");CHKERRQ(ierr);
/* Create the solver object and attach the grid/physics info */
ierr = DMMGCreate(comm,1,&user,&dmmg1);CHKERRQ(ierr);
ierr = DMMGSetDM(dmmg1,(DM)da1);CHKERRQ(ierr);
ierr = DMMGSetISColoringType(dmmg1,IS_COLORING_GLOBAL);CHKERRQ(ierr);
ierr = DMMGSetInitialGuess(dmmg1,FormInitialGuess1);CHKERRQ(ierr);
ierr = DMMGSetSNES(dmmg1,FormFunction1,0);CHKERRQ(ierr);
ierr = DMMGSetFromOptions(dmmg1);CHKERRQ(ierr);
/* Set problem parameters (velocity of lid, prandtl, and grashof numbers) */
ierr = DAGetInfo(da1,PETSC_NULL,&mx,&my,0,0,0,0,0,0,0,0);CHKERRQ(ierr);
user.lidvelocity = 1.0/(mx*my);
user.prandtl = 1.0;
user.grashof = 1000.0;
ierr = PetscOptionsGetReal(PETSC_NULL,"-lidvelocity",&user.lidvelocity,PETSC_NULL);CHKERRQ(ierr);
ierr = PetscOptionsGetReal(PETSC_NULL,"-prandtl",&user.prandtl,PETSC_NULL);CHKERRQ(ierr);
ierr = PetscOptionsGetReal(PETSC_NULL,"-grashof",&user.grashof,PETSC_NULL);CHKERRQ(ierr);
ierr = PetscOptionsHasName(PETSC_NULL,"-solvesubphysics",&SolveSubPhysics);CHKERRQ(ierr);
ierr = PetscOptionsHasName(PETSC_NULL,"-Jacobi",&Jacobi);CHKERRQ(ierr);
if (Jacobi) GaussSeidel=PETSC_FALSE;
ierr = PetscPrintf(comm,"grashof: %g, ",user.grashof);CHKERRQ(ierr);
if (GaussSeidel){
ierr = PetscPrintf(comm,"use Block Gauss-Seidel\n");CHKERRQ(ierr);
} else {
ierr = PetscPrintf(comm,"use Block Jacobi\n");CHKERRQ(ierr);
}
ierr = PetscPrintf(comm,"===========================================\n");CHKERRQ(ierr);
/* Solve the nonlinear system 1 */
if (SolveSubPhysics){
ierr = DMMGSolve(dmmg1);CHKERRQ(ierr);
snes = DMMGGetSNES(dmmg1);
ierr = SNESGetIterationNumber(snes,&its);CHKERRQ(ierr);
ierr = PetscPrintf(comm,"Physics 1: Number of Newton iterations = %D\n\n", its);CHKERRQ(ierr);
}
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Setup Physics 2:
- Lap(T) + PR*Div([U*T,V*T]) = 0
where U and V are given by the given x.u and x.v
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
ierr = DACreate2d(comm,DA_NONPERIODIC,DA_STENCIL_STAR,-4,-4,PETSC_DECIDE,PETSC_DECIDE,1,1,0,0,&da2);CHKERRQ(ierr);
ierr = DASetFieldName(da2,0,"temperature");CHKERRQ(ierr);
/* Create the solver object and attach the grid/physics info */
ierr = DMMGCreate(comm,1,&user,&dmmg2);CHKERRQ(ierr);
ierr = DMMGSetDM(dmmg2,(DM)da2);CHKERRQ(ierr);
ierr = DMMGSetISColoringType(dmmg2,IS_COLORING_GLOBAL);CHKERRQ(ierr);
ierr = DMMGSetInitialGuess(dmmg2,FormInitialGuess2);CHKERRQ(ierr);
ierr = DMMGSetSNES(dmmg2,FormFunction2,0);CHKERRQ(ierr);
ierr = DMMGSetFromOptions(dmmg2);CHKERRQ(ierr);
/* Solve the nonlinear system 2 */
if (SolveSubPhysics){
ierr = DMMGSolve(dmmg2);CHKERRQ(ierr);
snes = DMMGGetSNES(dmmg2);
ierr = SNESGetIterationNumber(snes,&its);CHKERRQ(ierr);
ierr = PetscPrintf(comm,"Physics 2: Number of Newton iterations = %D\n\n", its);CHKERRQ(ierr);
}
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solve system 1 and 2 iteratively
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
ierr = DACreateLocalVector(da1,&X1_local);CHKERRQ(ierr);
ierr = DACreateLocalVector(da2,&X2_local);CHKERRQ(ierr);
/* Only 1 snes iteration is allowed for each subphysics */
/*
snes = DMMGGetSNES(dmmg1);
ierr = SNESSetTolerances(snes,PETSC_DEFAULT,PETSC_DEFAULT,PETSC_DEFAULT,1,PETSC_DEFAULT);CHKERRQ(ierr);
snes = DMMGGetSNES(dmmg2);
ierr = SNESSetTolerances(snes,PETSC_DEFAULT,PETSC_DEFAULT,PETSC_DEFAULT,1,PETSC_DEFAULT);CHKERRQ(ierr);
*/
max_its = 5;
ierr = PetscOptionsGetInt(PETSC_NULL,"-mp_max_it",&max_its,PETSC_NULL);CHKERRQ(ierr);
user.nsolve = 0;
for (i=0; i<max_its; i++){
ierr = PetscPrintf(comm,"\nIterative nsolve %D ...\n", user.nsolve);CHKERRQ(ierr);
if (!GaussSeidel){
/* get the ghosted X1_local for Physics 2 */
X1 = DMMGGetx(dmmg1); //Jacobian
if (i){ierr = DAVecRestoreArray(da1,X1_local,(Field1 **)&user.x1);CHKERRQ(ierr);}
ierr = DAGlobalToLocalBegin(da1,X1,INSERT_VALUES,X1_local);CHKERRQ(ierr);
ierr = DAGlobalToLocalEnd(da1,X1,INSERT_VALUES,X1_local);CHKERRQ(ierr);
ierr = DAVecGetArray(da1,X1_local,(Field1 **)&user.x1);CHKERRQ(ierr);
}
ierr = DMMGSolve(dmmg1);CHKERRQ(ierr);
snes = DMMGGetSNES(dmmg1);
ierr = SNESGetIterationNumber(snes,&its);CHKERRQ(ierr);
if (GaussSeidel){
/* get the ghosted X1_local for Physics 2 */
X1 = DMMGGetx(dmmg1);
if (i){ierr = DAVecRestoreArray(da1,X1_local,(Field1 **)&user.x1);CHKERRQ(ierr);}
ierr = DAGlobalToLocalBegin(da1,X1,INSERT_VALUES,X1_local);CHKERRQ(ierr);
ierr = DAGlobalToLocalEnd(da1,X1,INSERT_VALUES,X1_local);CHKERRQ(ierr);
ierr = DAVecGetArray(da1,X1_local,(Field1 **)&user.x1);CHKERRQ(ierr);
}
ierr = PetscPrintf(comm," Iterative physics 1: Number of Newton iterations = %D\n", its);CHKERRQ(ierr);
user.nsolve++;
ierr = DMMGSolve(dmmg2);CHKERRQ(ierr);
snes = DMMGGetSNES(dmmg2);
ierr = SNESGetIterationNumber(snes,&its);CHKERRQ(ierr);
/* get the ghosted X2_local for Physics 1 */
X2 = DMMGGetx(dmmg2);
if (i){ierr = DAVecRestoreArray(da2,X2_local,(Field2 **)&user.x2);CHKERRQ(ierr);}
ierr = DAGlobalToLocalBegin(da2,X2,INSERT_VALUES,X2_local);CHKERRQ(ierr);
ierr = DAGlobalToLocalEnd(da2,X2,INSERT_VALUES,X2_local);CHKERRQ(ierr);
ierr = DAVecGetArray(da2,X2_local,(Field2 **)&user.x2);CHKERRQ(ierr);
ierr = PetscPrintf(comm," Iterative physics 2: Number of Newton iterations = %D\n", its);CHKERRQ(ierr);
//user.nsolve++;
}
ierr = DAVecRestoreArray(da1,X1_local,(Field1 **)&user.x1);CHKERRQ(ierr);
ierr = DAVecRestoreArray(da2,X2_local,(Field2 **)&user.x2);CHKERRQ(ierr);
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Create the DMComposite object to manage the two grids/physics.
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
ierr = PetscPrintf(comm," \n\n DMComposite iteration......\n");CHKERRQ(ierr);
ierr = DMCompositeCreate(comm,&pack);CHKERRQ(ierr);
ierr = DMCompositeAddDM(pack,(DM)da1);CHKERRQ(ierr);
ierr = DMCompositeAddDM(pack,(DM)da2);CHKERRQ(ierr);
/* Create the solver object and attach the grid/physics info */
ierr = DMMGCreate(comm,1,&user,&dmmg_comp);CHKERRQ(ierr);
ierr = DMMGSetDM(dmmg_comp,(DM)pack);CHKERRQ(ierr);
ierr = DMMGSetISColoringType(dmmg_comp,IS_COLORING_GLOBAL);CHKERRQ(ierr);
ierr = DMMGSetInitialGuess(dmmg_comp,FormInitialGuessComp);CHKERRQ(ierr);
ierr = DMMGSetSNES(dmmg_comp,FormFunctionComp,0);CHKERRQ(ierr);
ierr = DMMGSetFromOptions(dmmg_comp);CHKERRQ(ierr);
/* Solve the nonlinear system */
/* ierr = DMMGSolve(dmmg_comp);CHKERRQ(ierr);
snes = DMMGGetSNES(dmmg_comp);
ierr = SNESGetIterationNumber(snes,&its);CHKERRQ(ierr);
ierr = PetscPrintf(comm,"Composite Physics: Number of Newton iterations = %D\n\n", its);CHKERRQ(ierr);*/
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Free spaces
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
ierr = DMCompositeDestroy(pack);CHKERRQ(ierr);
ierr = DADestroy(da1);CHKERRQ(ierr);
ierr = DADestroy(da2);CHKERRQ(ierr);
ierr = DMMGDestroy(dmmg_comp);CHKERRQ(ierr);
ierr = PetscViewerASCIIOpen(comm,"log.py",&viewer);CHKERRQ(ierr);
/* -log_summary */
ierr = PetscLogPrintSummaryToPy(comm,viewer);CHKERRQ(ierr);
/* -snes_view */
//snes = DMMGGetSNES(dmmg1);CHKERRQ(ierr);
ierr = PetscViewerDestroy(viewer);CHKERRQ(ierr);
ierr = DMMGDestroy(dmmg1);CHKERRQ(ierr);
ierr = DMMGDestroy(dmmg2);CHKERRQ(ierr);
ierr = VecDestroy(X1_local);CHKERRQ(ierr);
ierr = VecDestroy(X2_local);CHKERRQ(ierr);
ierr = PetscFinalize();CHKERRQ(ierr);
return 0;
}
int DoSolve(DMMG *dmmg)
/* ------------------------------------------------------------------- */
{
AppCtx *user = (AppCtx*)dmmg[0]->user;
Parameter *param;
PetscReal t_output = 0.0;
int ierr, n_plot = 0, Ncomponents, components[3];
DA da = DMMGGetDA(dmmg);
Vec Xstar;
Characteristic c;
ierr = PetscBagGetData(user->bag,(void**)¶m);
CHKERRQ(ierr);
ierr = DAGetGlobalVector(da, &Xstar);
CHKERRQ(ierr);
/*------------ BEGIN CHARACTERISTIC SETUP ---------------*/
ierr = CharacteristicCreate(PETSC_COMM_WORLD, &c);
CHKERRQ(ierr);
/* set up the velocity interpolation system */
Ncomponents = 2;
components[0] = 0;
components[1] = 1;
ierr = CharacteristicSetVelocityInterpolationLocal(c, da, DMMGGetx(dmmg), user->Xold, Ncomponents, components, InterpVelocity2D, user);
CHKERRQ(ierr);
/* set up the fields interpolation system */
Ncomponents = 1;
components[0] = 2;
ierr = CharacteristicSetFieldInterpolationLocal(c, da, user->Xold, Ncomponents, components, InterpFields2D, user);
CHKERRQ(ierr);
/*------------ END CHARACTERISTIC SETUP ----------------*/
/* output initial data */
PetscPrintf(PETSC_COMM_WORLD," Initialization, Time: %5.4g\n", param->t);
if (param->verify) {
ierr = DoVerification(dmmg,user);
CHKERRQ(ierr);
}
ierr = DoOutput(dmmg,n_plot);
CHKERRQ(ierr);
t_output += param->t_output_interval;
n_plot++;
/* timestep loop */
for (param->t=param->dt; param->t<=param->t_max; param->t+=param->dt) {
if (param->n > param->N_steps) {
PetscPrintf(PETSC_COMM_WORLD,"EXCEEDED MAX NUMBER OF TIMESTEPS! EXITING SOLVE!\n");
return 0;
}
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solve at time t & copy solution into solution vector.
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
/* Copy in the velocities to Xstar */
ierr = VecCopy(DMMGGetx(dmmg), Xstar);
CHKERRQ(ierr);
/* Put \phi_* into Xstar */
ierr = CharacteristicSolve(c, param->dt, Xstar);
CHKERRQ(ierr);
/* Copy the advected field into the solution \phi_t = \phi_* */
ierr = VecCopy(Xstar, DMMGGetx(dmmg));
CHKERRQ(ierr);
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Copy new solution to old solution in prep for the next timestep.
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
ierr = VecCopy(DMMGGetx(dmmg), user->Xold);
CHKERRQ(ierr);
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Timestep complete, report and update counter.
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
PetscPrintf(PETSC_COMM_WORLD," Step: %d, Time: %5.4g\n", param->n, param->t);
param->n++;
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Verify and make output.
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
if (param->verify) {
ierr = DoVerification(dmmg,user);
CHKERRQ(ierr);
}
if (param->t >= t_output) {
ierr = DoOutput(dmmg,n_plot);
CHKERRQ(ierr);
t_output += param->t_output_interval;
n_plot++;
}
}
ierr = DARestoreGlobalVector(da, &Xstar);
CHKERRQ(ierr);
ierr = CharacteristicDestroy(c);
CHKERRQ(ierr);
return 0;
}
