void CECTag::DebugPrint(int level, bool print_empty) const
{
if (m_dataLen || print_empty) {
wxString space;
for (int i = level; i--;) space += wxT(" ");
wxString s1 = CFormat(wxT("%s%s %d = ")) % space % GetDebugNameECTagNames(m_tagName) % m_dataLen;
wxString s2;
switch (m_tagName) {
case EC_TAG_DETAIL_LEVEL:
s2 = GetDebugNameEC_DETAIL_LEVEL(GetInt()); break;
case EC_TAG_SEARCH_TYPE:
s2 = GetDebugNameEC_SEARCH_TYPE(GetInt()); break;
case EC_TAG_STAT_VALUE_TYPE:
s2 = GetDebugNameEC_STATTREE_NODE_VALUE_TYPE(GetInt()); break;
default:
switch (m_dataType) {
case EC_TAGTYPE_UINT8:
case EC_TAGTYPE_UINT16:
case EC_TAGTYPE_UINT32:
case EC_TAGTYPE_UINT64:
s2 = CFormat(wxT("%d")) % GetInt(); break;
case EC_TAGTYPE_STRING:
s2 = GetStringData(); break;
case EC_TAGTYPE_DOUBLE:
s2 = CFormat(wxT("%.1f")) % GetDoubleData(); break;
case EC_TAGTYPE_HASH16:
s2 = GetMD4Data().Encode(); break;
case EC_TAGTYPE_CUSTOM:
if (m_dataLen == 0) {
s2 = wxT("empty");
} else {
// Make a hex dump (limited to maxOutput)
const uint32 maxOutput = 50;
for (uint32 i = 0; i < m_dataLen; i++) {
if (i == maxOutput) {
s2 += wxT("...");
break;
}
s2 += CFormat(wxT("%02X ")) % (unsigned char) m_tagData[i];
}
}
break;
default:
s2 = GetDebugNameECTagTypes(m_dataType);
}
}
DoECLogLine(s1 + s2);
}
for (TagList::const_iterator it = m_tagList.begin(); it != m_tagList.end(); ++it) {
it->DebugPrint(level + 1, true);
}
}
//Fileinput
int Gene::Interpreter(string DataName, string& DataItem, bool Input) {
int DataID = TranslateFileHeader(DataName,GENE);
if (DataID == -1) {
AddData(DataName.data(),DataItem.data(),STRING);
//FErrorFile() << "UNRECOGNIZED REFERENCE: " << GetData("FILENAME",STRING) << " data reference: " << DataName << " not recognized." << endl;
//FlushErrorFile();
return FAIL;
}
switch (DataID) {
case GENE_DBLINK: {
if (Input) {
AddData(DataName.data(),DataItem.data(),DATABASE_LINK);
} else {
DataItem = GetAllDataString(DataName.data(),DATABASE_LINK);
}
break;
} case GENE_COORD: {
if (Input) {
vector<string>* Strings = StringToStrings(DataItem,".");
if (Strings->size() >= 2) {
AddData("START COORD",atof((*Strings)[0].data()));
AddData("END COORD",atof((*Strings)[1].data()));
}
delete Strings;
} else {
double Start = GetDoubleData("START COORD");
double End = GetDoubleData("END COORD");
if (Start != FLAG && End != FLAG) {
DataItem.assign(dtoa(Start));
DataItem.append("..");
DataItem.append(dtoa(End));
}
}
break;
} case GENE_REACTION: {
if (Input) {
//Do nothing... reactions will add themselves to the genes
} else {
for (int i=0; i < int(ReactionList.size()); i++) {
DataItem.append(ReactionList[i]->GetData("DATABASE",STRING));
if (i < int(ReactionList.size()-1)) {
DataItem.append("\t");
}
}
}
break;
} case GENE_PARALOG: {
if (Input) {
vector<string>* Strings = StringToStrings(DataItem,"\t ");
for (int i=0; i < int(Strings->size()); i += 2) {
if (AddData("PARALOGS",(*Strings)[i].data(),STRING)) {;
AddData("PARA SIMS",atof((*Strings)[i+1].data()),false);
}
}
delete Strings;
} else {
vector<string> AllParalogs = GetAllData("PARALOGS",STRING);
vector<double> AllSims = GetAllData("PARA SIMS");
for (int i=0; i < int(AllParalogs.size()); i++) {
DataItem.append(AllParalogs[i]);
DataItem.append(" ");
DataItem.append(dtoa(AllSims[i]));
if (i < int(AllParalogs.size()-1)) {
DataItem.append("\t");
}
}
}
break;
} case GENE_ORTHOLOG: {
if (Input) {
vector<string>* Strings = StringToStrings(DataItem,"\t ");
for (int i=0; i < int(Strings->size()); i += 2) {
if (AddData("ORTHOLOGS",(*Strings)[i].data(),STRING)) {;
AddData("ORTHO SIMS",atof((*Strings)[i+1].data()),false);
}
}
delete Strings;
} else {
vector<string> AllParalogs = GetAllData("ORTHOLOGS",STRING);
vector<double> AllSims = GetAllData("ORTHO SIMS");
for (int i=0; i < int(AllParalogs.size()); i++) {
DataItem.append(AllParalogs[i]);
DataItem.append(" ");
DataItem.append(dtoa(AllSims[i]));
if (i < int(AllParalogs.size()-1)) {
DataItem.append("\t");
}
}
}
break;
} case GENE_DOUBLE: {
if (Input) {
AddData(DataName.data(),DataItem.data(),DOUBLE);
} else {
DataItem = GetAllDataString(DataName.data(),DOUBLE);
}
break;
} case GENE_STRING: {
if (Input) {
AddData(DataName.data(),DataItem.data(),STRING);
} else {
DataItem = GetAllDataString(DataName.data(),STRING);
}
break;
} case GENE_QUERY: {
if (Input) {
if (GetParameter("save query data on input").compare("1") == 0) {
AddData(DataName.data(),DataItem.data(),STRING);
}
} else {
DataItem = Query(DataName);
}
break;
} case GENE_LOAD: {
if (Input) {
LoadGene(DataItem);
} else {
DataItem = GetData("DATABASE",STRING);
}
break;
} default: {
//FErrorFile() << "UNRECOGNIZED DATA ID: Data ID: " << DataID << " input for data reference: " << DataName << " not recognized. Check gene code.";
//FlushErrorFile();
return FAIL;
}
}
return SUCCESS;
}
