void COligofarCfg::PrintFullHelp( ostream& o )
{
o << "usage:\n";
pair<int,int> colw(0,0);
for( int section = 0; section < eSection_END; ++section ) {
if( section != eSection_passopt )
PrintFullHelp( EConfigSection( section ), colw, 0, 0 );
}
PrintFullHelp( eSection_passopt, colw, 0, 0 );
if( GetPassCount() > 1 ) {
PrintFullHelp( eSection_passopt, colw, 0, 1 );
}
for( int section = 0; section < eSection_END; ++section ) {
if( section != eSection_passopt )
PrintFullHelp( EConfigSection( section ), colw, &o, 0 );
}
if( GetPassCount() > 1 ) o << "Initial pass parameters are:\n";
PrintFullHelp( eSection_passopt, colw, &o, 0 );
if( GetPassCount() > 1 ) {
o << "Refining pass parameters are:\n";
PrintFullHelp( eSection_passopt, colw, &o, 1 );
}
o
<< "\nRelative orientation flags recognized:\n"
<< " p|centripetal|inside|pcr|solexa reads are oriented so that vectors 5'->3' pointing to each other\n"
<< " f|centrifugal|outside reads are oriented so that vectors 5'->3' are pointing outside\n"
<< " i|incr|incremental|solid reads are on same strand, first preceeds second on this strand\n"
<< " d|decr|decremental reads are on same strand, first succeeds second on this strand\n"
<< "\nOutput flags (for -O):\n"
<< " - reset all flags\n"
<< " h report all hits before ranking\n"
<< " u report unmapped reads\n"
<< " x indicate that there are more reads of this rank\n"
<< " m indicate that there are more reads of lower ranks\n"
<< " t indicate that there were no more hits\n"
<< " d report differences between query and subject\n"
<< " e print empty line after all hits of the read are reported\n"
<< " r print raw scores rather then relative scores\n"
<< " z output in SAM 1.2 format (clears flag Z)\n"
<< " Z output in native format (clears flag z)\n"
<< " p print unpaired hits only if there are no paired\n"
<< " Only 'p' and 'u' flags work in SAM 1.2 format output\n"
<< "Read file data options may be used only in combinations:\n"
<< " 1. with column file:\n"
<< " -q0 -i input.col -c no \n"
<< " -q1 -i input.col -c no \n"
<< " -q0 -i input.col -c yes\n"
<< " 2. with fasta or fastq files:\n"
<< " -q0 -1 reads1.fa [-2 reads2.fa] -c yes|no\n"
<< " -q1 -1 reads1.faq [-2 reads2.faq] -c no\n"
<< " 3. with Solexa 4-channel data\n"
<< " -q4 -i input.id -1 reads1.prb [-2 reads2.prb] -c no\n"
<< "\nNB: although -L flag is optional, it is strongly recommended to use it!\n" ;
}
void CBspMapResourceProvider::LoadTextures(const CBspFile& bspFile, CPakFile& pakFile)
{
const Bsp::TextureArray& textures(bspFile.GetTextures());
m_materials.resize(textures.size());
for(uint32 i = 0; i < textures.size(); i++)
{
const Bsp::TEXTURE& texture(textures[i]);
auto resultMaterial = BspMapMaterialPtr(new CBspMapMaterial());
m_materials[i] = resultMaterial;
ShaderMap::const_iterator shaderIterator = m_shaders.find(texture.name);
if(shaderIterator == m_shaders.end())
{
//Create a basic material with this texture
std::string fullName;
if(!pakFile.TryCompleteFileName(texture.name, fullName))
{
continue;
}
LoadTexture(fullName.c_str(), pakFile);
{
auto pass = BspMapPassPtr(new CBspMapPass());
pass->SetTexture(GetTexture(fullName.c_str()));
pass->SetTextureSource(CBspMapPass::TEXTURE_SOURCE_DIFFUSE);
pass->SetBlendingFunction(Palleon::TEXTURE_COMBINE_MODULATE);
resultMaterial->AddPass(pass);
}
{
auto pass = BspMapPassPtr(new CBspMapPass());
pass->SetTextureSource(CBspMapPass::TEXTURE_SOURCE_LIGHTMAP);
pass->SetBlendingFunction(Palleon::TEXTURE_COMBINE_MODULATE);
resultMaterial->AddPass(pass);
}
}
else
{
const QUAKE_SHADER& shader = shaderIterator->second;
resultMaterial->SetIsSky(shader.isSky);
for(QuakeShaderPassArray::const_iterator passIterator(shader.passes.begin());
passIterator != shader.passes.end(); passIterator++)
{
const QUAKE_SHADER_PASS& passData(*passIterator);
if(passData.mapName.length() < 4) continue;
auto pass = BspMapPassPtr(new CBspMapPass());
{
Palleon::TEXTURE_COMBINE_MODE blendingFunction = Palleon::TEXTURE_COMBINE_MODULATE;
switch(passData.blendFunc)
{
case QUAKE_SHADER_BLEND_BLEND:
blendingFunction = Palleon::TEXTURE_COMBINE_LERP;
break;
case QUAKE_SHADER_BLEND_ADD:
blendingFunction = Palleon::TEXTURE_COMBINE_ADD;
break;
case QUAKE_SHADER_BLEND_FILTER:
blendingFunction = Palleon::TEXTURE_COMBINE_MODULATE;
break;
}
pass->SetBlendingFunction(blendingFunction);
}
if(passData.mapName == "$lightmap")
{
pass->SetTextureSource(CBspMapPass::TEXTURE_SOURCE_LIGHTMAP);
}
else
{
std::string fileName(passData.mapName.begin(), passData.mapName.begin() + passData.mapName.length() - 4);
std::string fullName;
if(!pakFile.TryCompleteFileName(fileName.c_str(), fullName))
{
continue;
}
LoadTexture(fullName.c_str(), pakFile);
pass->SetTexture(GetTexture(fullName.c_str()));
pass->SetTextureSource(CBspMapPass::TEXTURE_SOURCE_DIFFUSE);
}
for(unsigned int i = 0; i < passData.tcMods.size(); i++)
{
const QUAKE_SHADER_TCMOD& tcMod(passData.tcMods[i]);
BspMapTcModPtr result;
switch(tcMod.type)
{
case QUAKE_SHADER_TCMOD_SCROLL:
result = BspMapTcModPtr(new CBspMapTcMod_Scroll(
tcMod.params[0],
tcMod.params[1]));
break;
case QUAKE_SHADER_TCMOD_SCALE:
result = BspMapTcModPtr(new CBspMapTcMod_Scale(
tcMod.params[0],
tcMod.params[1]));
break;
case QUAKE_SHADER_TCMOD_ROTATE:
result = BspMapTcModPtr(new CBspMapTcMod_Rotate(
tcMod.params[0]));
break;
case QUAKE_SHADER_TCMOD_TURB:
result = BspMapTcModPtr(new CBspMapTcMod_Turb(
tcMod.params[1],
tcMod.params[3]));
break;
case QUAKE_SHADER_TCMOD_STRETCH:
{
BSPMAPWAVEPARAMS wave;
wave.type = BSPMAPWAVEPARAMS::WAVE_SIN;
wave.base = tcMod.params[0];
wave.amplitude = tcMod.params[1];
wave.phase = tcMod.params[2];
wave.freq = tcMod.params[3];
result = BspMapTcModPtr(new CBspMapTcMod_Stretch(wave));
}
break;
default:
continue;
break;
}
pass->AddTcMod(result);
}
resultMaterial->AddPass(pass);
if(resultMaterial->GetPassCount() == CBspMapMaterial::MAX_PASS)
{
break;
}
}
}
}
}
