예제 #1
0
/*
 * Class:     hdf_hdf5lib_H5
 * Method:    H5Adelete_by_name
 * Signature: (JLjava/lang/String;Ljava/lang/String;J)I
 */
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Adelete_1by_1name
    (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id)
{
    herr_t      retVal = -1;
    const char *aName;
    const char *attrName;

    PIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
    if (aName != NULL && attrName != NULL) {
        retVal = H5Adelete_by_name((hid_t)loc_id, aName, attrName, (hid_t)lapl_id);

        UNPIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);

        if (retVal < 0)
            h5libraryError(env);
    }

    return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Adelete_1by_1name */
예제 #2
0
void MAJ_236_300_champs(med_idt fid)
{
  med_err lret,ret;
  /*   med_idt         _datagroup=0; */
  med_field_type   typcha;
  char nomcha    [MED_NAME_SIZE+1]="";
  char _meshname [MED_NAME_SIZE+1]="";
  char _dtunit   [MED_SNAME_SIZE+1]="";
  char *comp= NULL, *unit= NULL;
  med_int   ncomp,ncha;
  med_int  _ncstp=0;
  med_bool _local=MED_FALSE;
  htri_t   _datasetexist;
  char _pathi[MED_TAILLE_CHA+1+MED_NAME_SIZE+1]=MED_CHA;
  char _pathf[MED_TAILLE_CHA+2+MED_NAME_SIZE+1]="/CHA_/";
  char _pathtmp[MED_TAILLE_CHA+3]="/CHA__/";
  int i,j;

  char nomlien[MED_NAME_SIZE+1]="";
  char * lien = NULL;
  med_int nln,nval;

  med_int  _nloc,_intgeotype,_sdim;
  char     _pathloc[MED_TAILLE_GAUSS+MED_NAME_SIZE+1]=MED_GAUSS;

  med_int  _npar,_numdt,_numit;
  char     _pathpari[MED_TAILLE_NUM_DATA+MED_NAME_SIZE+1+2*MED_MAX_PARA+1+1]=MED_NUM_DATA;
  char     _pathparf[MED_TAILLE_NUM_DATA+MED_NAME_SIZE+1+2*MED_MAX_PARA+1+1]=MED_NUM_DATA;
  int      _pathparlen;
  med_size _n=0;
  char     _cpstnamei[2*MED_MAX_PARA+1]="";
  char     _cpstnamef[2*MED_MAX_PARA+1]="";
  char     _uniname[MED_SNAME_SIZE+1]="";
/*   hid_t    _lac_plist_id; */
  hid_t    _lcp_plist_id;
  hid_t    _ocp_plist_id;
  med_bool _createunt = MED_TRUE;

  MAJ_version_num(fid,2,3,6);

  /* MAJ des varaibles scalaires */
  _npar = MEDnParameter(fid);
  if (_npar > 0) {
    fprintf(stdout,"  >>> Normalisation des paramètres scalaires\n");
    _pathparf[MED_TAILLE_NUM_DATA-2]='_';
/*     _lac_plist_id = H5Pcreate( H5P_LINK_ACCESS ); */
    _ocp_plist_id = H5Pcreate( H5P_OBJECT_COPY );
    _lcp_plist_id = H5Pcreate( H5P_LINK_CREATE );
    H5Pset_create_intermediate_group( _lcp_plist_id, 1 );
    H5Pset_copy_object( _ocp_plist_id, H5O_COPY_SHALLOW_HIERARCHY_FLAG);
  }

  for (i=0 ; i < _npar ; i++ ) {

    MED_ERR_EXIT_IF (_MEDobjectGetName(fid, _pathpari ,i, &_pathpari[MED_TAILLE_NUM_DATA]) < 0,
		     MED_ERR_ACCESS,MED_ERR_DATAGROUP,_pathpari);


    strcpy(&_pathparf[MED_TAILLE_NUM_DATA],&_pathpari[MED_TAILLE_NUM_DATA]);
/*     SSCRUTE(_pathparf); */
/*     SSCRUTE(_pathpari); */

    /*Copie le group avec ses attributs et les objets de premier niveau.*/
    ret =  H5Ocopy(fid,_pathpari,fid,_pathparf,_ocp_plist_id,_lcp_plist_id);
/*     ret =  H5Lcopy(fid,_pathpari,fid,_pathparf,_lcp_plist_id,_lac_plist_id); */
    EXIT_IF(ret < 0,"Copie du datagroup",_pathpari);

    _pathparlen=strlen(_pathpari);
    _pathpari[_pathparlen]='/';_pathparf[_pathparlen]='/';
    ++_pathparlen;
    _pathpari[_pathparlen]='\0';_pathparf[_pathparlen]='\0';

/*     SSCRUTE(_pathparf); */
/*     SSCRUTE(_pathpari); */

    ret =_MEDnObjects(fid,_pathpari, &_n);
    MED_ERR_EXIT_IF( (ret == (MED_ERR_COUNT + MED_ERR_DATAGROUP)), MED_ERR_COUNT,MED_ERR_PARAMETER,_pathpari);

    for (j=0 ; j < _n ; ++j ) {
      MED_ERR_EXIT_IF (_MEDobjectGetName(fid, _pathpari ,j, &_pathpari[_pathparlen]) < 0,
		       MED_ERR_ACCESS,MED_ERR_DATAGROUP,_pathpari);

      MED_ERR_EXIT_IF (_MEDattributeNumRdByName(fid,_pathpari,MED_NOM_NOR,
						MED_INTERNAL_INT,(unsigned char * const ) &_numit) < 0,
		       MED_ERR_READ,MED_ERR_ATTRIBUTE,MED_NOM_NOR);

      MED_ERR_EXIT_IF (_MEDattributeNumRdByName(fid,_pathpari,MED_NOM_NDT,
						MED_INTERNAL_INT,(unsigned char * const ) &_numdt) < 0,
		       MED_ERR_READ,MED_ERR_ATTRIBUTE,MED_NOM_NDT);
      
      MED_ERR_EXIT_IF (_MEDattributeStringRdByName(fid,_pathpari,MED_NOM_UNI,
						MED_SNAME_SIZE,_uniname) < 0,
		       MED_ERR_READ,MED_ERR_ATTRIBUTE,MED_NOM_NDT);
      
      _MEDgetComputationStepName(MED_SORT_DTIT,_numdt,_numit,&_pathparf[_pathparlen]);
/*       strcat(_pathpari,"/"); */
/*       strcat(_pathparf,"/"); */
/*       SSCRUTE(_pathparf); */
/*       SSCRUTE(_pathpari); */

/*       ret =  H5Ocopy(fid,_pathpari,fid,_pathparf,_ocp_plist_id,_lcp_plist_id); */
/*       ret =  H5Lcopy(fid,_pathpari,fid,_pathparf,_lcp_plist_id,_lac_plist_id); */
/*       H5Eprint1(stderr); */
/*       EXIT_IF(ret < 0,"Copie d'une étape de calcul du paramètre scalaire ",_pathpari); */

      /*On modifie temporairement _pathpari pour pointer dans _pathparf*/
      _pathpari[MED_TAILLE_NUM_DATA-2]='_';
/*       SSCRUTE(_pathparf); */
/*       SSCRUTE(_pathpari); */
      ret = H5Gmove(fid, _pathpari, _pathparf  );
      EXIT_IF(ret < 0,"Renommage de l'étape de calcul",_pathpari);
      _pathpari[MED_TAILLE_NUM_DATA-2]='A';


      MED_ERR_EXIT_IF(H5Adelete_by_name( fid, _pathparf, MED_NOM_UNI, H5P_DEFAULT ) < 0,
		      MED_ERR_DELETE,MED_ERR_ATTRIBUTE,_pathparf);

      _pathparf[_pathparlen]='\0';
      _pathpari[_pathparlen]='\0';
      if ( _createunt ) {
	MED_ERR_EXIT_IF (_MEDattributeStringWrByName(fid,_pathparf,MED_NOM_UNT, MED_SNAME_SIZE,_uniname) < 0,
			 MED_ERR_WRITE,MED_ERR_ATTRIBUTE,MED_NOM_UNT);
	_createunt = MED_FALSE;
      }
    }
    _createunt = MED_TRUE;
    _pathpari[MED_TAILLE_NUM_DATA]='\0';
  }

  if ( _npar > 0 ) {

    _pathpari[MED_TAILLE_NUM_DATA]='\0';
    _pathparf[MED_TAILLE_NUM_DATA]='\0';
    MED_ERR_EXIT_IF ( H5Ldelete(fid,_pathpari,H5P_DEFAULT) < 0 ,
		      MED_ERR_DELETE,MED_ERR_LINK,_pathpari);

    ret = H5Gmove(fid, _pathparf, _pathpari  );
    EXIT_IF(ret < 0,"Renommage du group de paramètres scalaires",_pathparf);

  }

  /* MAJ des localisations */
  _nloc = MEDnLocalization(fid);
/*   ISCRUTE(_nloc); */
  if (_nloc > 0)
    fprintf(stdout,"  >>> Normalisation des localisations des points d'intégration\n");
  for (i=0 ; i < _nloc ; i++ ) {

/*     SSCRUTE(_pathloc); */
    MED_ERR_EXIT_IF (_MEDobjectGetName(fid, _pathloc ,i, &_pathloc[MED_TAILLE_GAUSS]) < 0,
		     MED_ERR_ACCESS,MED_ERR_DATAGROUP,_pathloc);
/*     SSCRUTE(_pathloc); */
    MED_ERR_EXIT_IF (_MEDattributeNumRdByName(fid,_pathloc,MED_NOM_GEO,
					      MED_INTERNAL_INT,(unsigned char * const ) &_intgeotype) < 0,
		     MED_ERR_READ,MED_ERR_ATTRIBUTE,MED_NOM_GEO);
    _sdim = (_intgeotype/100);

    MED_ERR_EXIT_IF (_MEDattributeNumWrByName(fid,_pathloc,MED_NOM_DIM,
					      MED_INTERNAL_INT,(const unsigned char * const) &_sdim) < 0,
		     MED_ERR_WRITE,MED_ERR_ATTRIBUTE,MED_NOM_DIM);

    MED_ERR_EXIT_IF ( _MEDattributeStringWrByName(fid,_pathloc,MED_NOM_INM,MED_NAME_SIZE,"") < 0,
		      MED_ERR_WRITE,MED_ERR_ATTRIBUTE,MED_NOM_INM);
    _pathloc[MED_TAILLE_GAUSS]='\0';

  }

  /* MAJ des liens */
  nln = MEDnLink(fid);
  if (nln > 0)
    fprintf(stdout,"  >>> Normalisation des liens\n");
  for (i=1 ; i <= nln ; i++ ) {


    ret =  MEDlinkInfo(fid, i, nomlien, &nval);
    EXIT_IF(ret,"Erreur a la demande d'information sur le lien",NULL);

/*     printf("\t- Lien n°%i de nom |%s| et de taille "IFORMAT"\n",i,nomlien,nval); */

    lien = (char *) malloc((nval+1)*sizeof(char));
    EXIT_IF(lien == NULL,NULL,NULL);

    ret = MEDlinkRd(fid, nomlien, lien );
    EXIT_IF(ret,"Erreur a la lecture du lien : ",nomlien);

    MAJ_version_num(fid,3,0,8);
    ret = MED30linkWr(fid,nomlien,lien);
    EXIT_IF(ret,"Erreur a l'écrtiure du lien : ",nomlien);
    MAJ_version_num(fid,2,3,6);
 
    lien[nval] = '\0';
/*     printf("\t\t|%s|\n\n",lien); */

    free(lien);
  }

  /* combien de champs dans le fichier */
  ncha = MEDnField(fid);
  EXIT_IF(ncha < 0,"lors de la lecture du nombre de champs",NULL);

  /* MAJ des champs */
  for (i =0;i<ncha;i++) {
    lret = 0;

    /* Lecture du nombre de composantes */
    ncomp = MEDfieldnComponent(fid,i+1);
    if (ncomp < 0) {
      MESSAGE("Erreur à la lecture du nombre de composantes : "); ISCRUTE(ncomp);
      exit(1);
    }

    /* Lecture du type du champ, des noms des composantes et du nom de l'unité*/
    comp = (char*) malloc(ncomp*MED_SNAME_SIZE+1);
    EXIT_IF(comp == NULL,NULL,NULL);
    unit = (char*) malloc(ncomp*MED_SNAME_SIZE+1);
    EXIT_IF(unit == NULL,NULL,NULL);

    /*     ret = MED231champInfoEtRen(fid,i+1,nomcha,&typcha,comp,unit,ncomp); */
    ret = MEDfieldInfo(fid,i+1,nomcha,_meshname,&_local,&typcha,comp,unit,_dtunit,&_ncstp);
    MED_ERR_EXIT_IF(ret,MED_ERR_ACCESS,MED_ERR_FIELD,nomcha);

    /* creation du champ destination */
    MAJ_version_num(fid,3,0,8);

    EXIT_IF( H5Gmove(fid, _pathi, _pathtmp  ) < 0,"Switch to ",_pathtmp);
    _datasetexist=H5Lexists( fid, _pathf, H5P_DEFAULT );
    if (_datasetexist ) { EXIT_IF( (H5Gmove(fid, _pathf, _pathi  ) < 0) ,"Switch to ",_pathi); }

    MED_ERR_EXIT_IF( MEDfieldCr(fid,nomcha,typcha,ncomp,comp,unit,_dtunit,_meshname ) < 0,
		     MED_ERR_CREATE,MED_ERR_FIELD,_pathf);
    EXIT_IF( H5Gmove(fid, _pathi  , _pathf  ) < 0,"Switch to ",_pathf);
    EXIT_IF( H5Gmove(fid, _pathtmp, _pathi  ) < 0,"Switch to ",_pathi);

    MAJ_version_num(fid,2,3,6);

    free(comp);
    free(unit);

    lret = MAJ_236_300_fieldOnEntity( fid, nomcha, _meshname, typcha, ncomp, MED_NODE,_ncstp, _pathi, _pathf);
    if (lret != 0) {
      MESSAGE("Erreur à la lecture des champs aux noeuds "); exit(1);
    }

    lret = MAJ_236_300_fieldOnEntity( fid, nomcha, _meshname, typcha, ncomp, MED_CELL,_ncstp, _pathi, _pathf);
    if (lret != 0) {
      MESSAGE("Erreur à la lecture des champs aux mailles "); exit(1);
    }

    lret = MAJ_236_300_fieldOnEntity( fid, nomcha, _meshname, typcha, ncomp, MED_DESCENDING_FACE,_ncstp, _pathi, _pathf);
    if (lret != 0) {
      MESSAGE("Erreur à la lecture des champs aux faces "); exit(1);
    }

    lret = MAJ_236_300_fieldOnEntity( fid, nomcha, _meshname, typcha, ncomp, MED_DESCENDING_EDGE,_ncstp, _pathi, _pathf);
    if (lret != 0) {
      MESSAGE("Erreur à la lecture des champs aux aretes "); exit(1);
    }

    lret = MAJ_236_300_fieldOnEntity( fid, nomcha, _meshname, typcha, ncomp, MED_NODE_ELEMENT,_ncstp, _pathi, _pathf);
    if (lret != 0) {
      MESSAGE("Erreur à la lecture des champs aux aretes "); exit(1);
    }

  }
  _datasetexist=H5Lexists( fid, _pathf, H5P_DEFAULT );

  if (_datasetexist ) {
    EXIT_IF( (H5Ldelete(fid,_pathi, H5P_DEFAULT) < 0) ,"Delete ",_pathi);
    EXIT_IF( (H5Gmove(fid, _pathf, _pathi  ) < 0) ,"Switch to ",_pathf);
  }


}
예제 #3
0
med_err _MEDattributeStringWrByName(med_idt pid,
				    const char * const path,
				    const char * const attname,
				    const med_size attsize,
				    const char * const val)
{
  med_access_mode MED_ACCESS_MODE;
  med_idt _attid=0,aid=0;
  med_err _ret=-1;
  int     type_hdf=0;
  med_bool        _attmustbecreated= MED_FALSE;
  hsize_t         _attsize=0;
  med_size        _valsize=0;

  if ( (MED_ACCESS_MODE = _MEDmodeAcces(pid) ) == MED_ACC_UNDEF ) {
    MED_ERR_(_ret,MED_ERR_INVALID,MED_ERR_ACCESSMODE, "MED_ACC_UNDEF" );
    SSCRUTE(attname); SSCRUTE(path);goto ERROR;
  }

  _valsize=strlen(val);
  if (_valsize > attsize) {
    MED_ERR_(_ret,MED_ERR_INVALID,MED_ERR_ATTRIBUTE, attname );
    ISCRUTE_size(_valsize);ISCRUTE_size(attsize);goto ERROR;
  }

  if ((aid = H5Screate(H5S_SCALAR)) < 0){
    MED_ERR_(_ret,MED_ERR_CREATE,MED_ERR_DATASPACE, attname );
    ISCRUTE_id(aid);
  }

  if ( (type_hdf = H5Tcopy(H5T_C_S1)) < 0) {
    MED_ERR_(_ret,MED_ERR_CREATE,MED_ERR_HDFTYPE, MED_ERR_NAME_MSG );
    SSCRUTE("H5T_C_S1"); goto ERROR;
  }

  if ( H5Tset_size(type_hdf,_valsize+1) < 0) {
    MED_ERR_(_ret,MED_ERR_CREATE,MED_ERR_HDFTYPE, MED_ERR_NAME_MSG );
    SSCRUTE("H5T_C_S1"); goto ERROR;
  }

  if  ( (_attid=H5Aopen_by_name( pid, path, attname, H5P_DEFAULT, H5P_DEFAULT ))  >= 0 )
    if ( MED_ACCESS_MODE == MED_ACC_RDEXT )  {
      MED_ERR_(_ret,MED_ERR_INVALID,MED_ERR_ACCESSMODE, "MED_ACC_RDEXT" );
      SSCRUTE(attname); SSCRUTE(path);goto ERROR;
    }

  if ( _attid > 0 ) {
    if ( (_attsize=H5Aget_storage_size(_attid) ) < 0 ) goto ERROR;
    if ( (_valsize+1)  > _attsize ) {
      if (H5Aclose(_attid) < 0) {
	MED_ERR_(_ret,MED_ERR_CLOSE,MED_ERR_ATTRIBUTE,"");
	ISCRUTE_id(_attid);
	goto ERROR;
	}
      if ( H5Adelete_by_name(pid,path,attname,H5P_DEFAULT) < 0 ) goto ERROR;
      _attmustbecreated=MED_TRUE;
    }
  }

  if ( (_attid < 0) || _attmustbecreated )
    if ( (_attid=H5Acreate_by_name( pid, path, attname, type_hdf, aid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT )) < 0 ) {
      MED_ERR_(_ret,MED_ERR_CREATE,MED_ERR_ATTRIBUTE, attname );
      SSCRUTE(path);goto ERROR;
    }


  if ( H5Awrite(_attid,type_hdf,val) < 0) {
    MED_ERR_(_ret,MED_ERR_WRITE,MED_ERR_ATTRIBUTE, attname );
    SSCRUTE(path);goto ERROR;
  }

  _ret=0;

 ERROR:

  if (type_hdf > 0 ) if ( H5Tclose(type_hdf) < 0) {
    MED_ERR_(_ret,MED_ERR_CLOSE,MED_ERR_HDFTYPE, MED_ERR_ID_MSG );
    ISCRUTE_int(type_hdf);
  }

  if (aid > 0 ) if ( H5Sclose(aid) < 0) {
    MED_ERR_(_ret,MED_ERR_CLOSE,MED_ERR_DATASPACE, MED_ERR_ID_MSG );
    ISCRUTE_id(aid);
  }

  if (_attid >0) if ( H5Aclose(_attid) < 0) {
    MED_ERR_(_ret,MED_ERR_CLOSE,MED_ERR_ATTRIBUTE, MED_ERR_ID_MSG );
    ISCRUTE_id(_attid);
  }


  return _ret;
}
med_err _MEDconvertStringDatasets(med_idt id, const char *lname, const H5L_info_t *linfo, visitordatas *data) {

  med_err  _ret=-1,_err=-1;
  med_idt  _gid=0;
  H5O_info_t oinfo;
  char     _tmpbuff[MAX_LEN_PATH+1]="";
  int      _tmpbuffsize=0;
  med_int  _nbratt=0;

#ifdef _DEBUG_
  SSCRUTE(lname);
#endif

  if (!strcmp(lname,".")) return 0;

  switch ( (*linfo).type ) {

  case H5L_TYPE_SOFT:
    oinfo.type=(H5O_type_t) H5G_LINK;
    break;
  case H5L_TYPE_HARD:
    if ( H5Oget_info_by_name( id, lname, &oinfo, H5P_DEFAULT ) <0) {
      MED_ERR_(_ret,MED_ERR_CALL,MED_ERR_API,"H5Oget_info_by_name");
      SSCRUTE(lname);
    }
    break;
  case H5L_TYPE_EXTERNAL:
  case H5L_TYPE_ERROR:
  default:
    MED_ERR_(_ret,MED_ERR_UNRECOGNIZED,MED_ERR_HDFTYPE,lname);
    ISCRUTE_int((*linfo).type);
    goto ERROR;
    break;
 }

  switch ( oinfo.type ) {

  case H5G_GROUP:
  case H5G_LINK:
    break;

  case H5G_DATASET:

    strcat(_tmpbuff,lname);
    _tmpbuffsize=strlen(_tmpbuff);

    /*
      Ce traitement est spécifique aux datatsets présents dans les familles
    */
/*     SSCRUTE(_tmpbuff); */
/*     SSCRUTE(&_tmpbuff[_tmpbuffsize-3]); */
    if ( strcmp(&_tmpbuff[_tmpbuffsize-3],MED_NOM_NOM) ) break;

    _tmpbuff[_tmpbuffsize-4]='\0';
/*     SSCRUTE(_tmpbuff); */

    /*
     * Lecture de l'attribut MED_NOM_NBR sur le dataset
     */
    if ( _MEDattributeNumRdByName(id,_tmpbuff,MED_NOM_NBR,MED_INTERNAL_INT,
				  ( unsigned char * const) &_nbratt ) < 0 ) {
      MED_ERR_(_ret,MED_ERR_READ,MED_ERR_ATTRIBUTE,MED_NOM_NBR);
      goto ERROR;
    }

/*     ISCRUTE(_nbratt); */
    _err=MAJ_236_300_string_datasets( data->gid2, _tmpbuff, MED_NOM_NOM, MED_TAILLE_LNOM,
				      MED_LNAME_SIZE,_nbratt);

    MED_ERR_EXIT_IF( _err < 0, MED_ERR_CALL, MED_ERR_API, "MAJ_236_300_string_datasets");

    _tmpbuff[_tmpbuffsize-4]='/';
    _err = H5Adelete_by_name( data->gid2, _tmpbuff, MED_NOM_NBR, H5P_DEFAULT  );

    MED_ERR_EXIT_IF( _err < 0, MED_ERR_DELETE, MED_ERR_ATTRIBUTE, "MED_NOM_NBR");


  break;

  case H5G_TYPE:
  default:
    MED_ERR_(_ret,MED_ERR_UNRECOGNIZED,MED_ERR_HDFTYPE,lname);
    goto ERROR;
  }
  _ret = 0;

 ERROR:
  return _ret;
}