void CodeCheck::keyPressed(int keyID)
{
if (codeEntered.length() == maxLength || inputConversion[keyID] == 'C')
{
codeEntered = "";
}
else if (inputConversion[keyID] == 'E')
{
if (!InputCheck(codeEntered))
{
codeEntered = "";
}
}
else
{
codeEntered += inputConversion[keyID];
}
}
/*
* Main function
*/
int main(int argc, char** argv)
{
struct timespec start, stop;
int next_option, verbose, write;
const char* const short_options = "hvn:g:o:s:i:";
char *giIndex = NULL;
char *includeIndex = NULL;
char *skipIndex = NULL;
clock_gettime(CLOCK_MONOTONIC, &start);
program_name = argv[0];
const struct option long_options[] = {
{ "help", 0, NULL, 'h'},
{ "verbose", 0, NULL, 'v'},
{ "nt", 1, NULL, 'n'},
{ "gi", 1, NULL, 'g'},
{ "nodes", 1, NULL, 'o'},
{ "skip", 1, NULL, 's'},
{ "include", 1, NULL, 'i'},
{ "dbSize", 1, NULL, 'd'},
{ NULL, 0, NULL, 0} /* Required at end of array. */
};
write = verbose = 0;
nt = gi = nodes = skip = include = NULL;
do {
next_option = getopt_long(argc, argv, short_options, long_options, NULL);
switch (next_option) {
case 'h':
print_usage(stdout, 0);
case 'v':
verbose = 1;
break;
case 'n':
nt = (char *) malloc(sizeof (char) * (strlen(optarg) + 1));
strcpy(nt, optarg);
break;
case 'g':
gi = (char *) malloc(sizeof (char) * (strlen(optarg) + 1));
strcpy(gi, optarg);
break;
case 'o':
nodes = (char *) malloc(sizeof (char) * (strlen(optarg) + 1));
strcpy(nodes, optarg);
break;
case 's':
skip = (char *) malloc(sizeof (char) * (strlen(optarg) + 1));
strcpy(skip, optarg);
break;
case 'i':
include = (char *) malloc(sizeof (char) * (strlen(optarg) + 1));
strcpy(include, optarg);
break;
case 'd':
MaxGb = atoi(optarg);
break;
}
} while (next_option != -1);
InputCheck(nt, gi, nodes, skip, include);
if(verbose == 1)
print_parameters();
if(verbose == 1)
printf("Getting biggest GI id from %s\n", gi);
GetMaxGiNuclDmp(gi);
if(verbose == 1)
printf("Importing GI and taxon ID pairs into memory from %s\n", gi);
ImportGiNuclDmp(gi);
if(verbose == 1)
printf("Getting biggest taxon ID from %s\n", nodes);
GetMaxNodeslDmp(nodes);
if(verbose == 1)
printf("Importing taxon parent and child IDs into memory from %s\n", nodes);
ImportNodeslDmp(nodes);
if(include != NULL) {
if(verbose == 1)
printf("Importing include taxon IDs from %s\n", include);
ImportInclude(include);
}
if(skip != NULL) {
if(verbose == 1)
printf("Importing exclude taxon IDs from %s\n", skip);
ImportExclude(skip);
}
if(verbose == 1)
printf("Reading and parsing fasta file %s\n", nt);
ReadFasta(nt);
if (nt) free(nt);
if (gi) free(gi);
if (nodes) free(nodes);
if (skip) free(skip);
if (include) free(include);
FreeIncludeExclude();
FreeGiId();
FreeTaxons();
clock_gettime(CLOCK_MONOTONIC, &stop);
printf("\n\tThe total time was %lu sec\n\n", timespecDiff(&stop, &start) / 1000000000);
return 0;
}
