////////////////////////////////////////////////////////
// Obsolete Function: printData(char * filename)
//
// Prints a matrix to the Outfile.
// Useful for debugging.
//
void ProbData::printData(char * filename)
{
ofstream Outfile(filename);
if (!Outfile) {
std::cout << "Warning: Unable to open " << filename << endl;
return;
}
if (!ProbMat.size())
{
Outfile << "Empty Matrix" << endl;
return;
}
Outfile << endl;
for (unsigned r = 0; r < ProbMat[0].size(); r++)
{
Outfile << r;
for (unsigned c = 0; c < ProbMat.size(); c++)
Outfile << '\t' << this->getValue(r, c);
Outfile << endl;
}
}
void
begin (int argc, const char * argv[])
{
size_t output;
size_t pos;
output = Outfile ("-");
Add_field (output, Sym ("uint4"), Sym ("bp0"));
Add_field (output, Sym ("uint4"), Sym ("bp1"));
File_fix (output, 1, 0);
pos = 0;
while (1)
{
const int char_in = getchar ();
if (char_in == EOF)
{
if (ferror (stdin))
Fatal ("input error");
else
{
if (pos % 2)
{
Poke (output, 0, 1, uInt4 (bp_letter_to_int4 (0)));
Advance (output, 1);
}
break;
}
}
Poke (output, 0, (pos % 2),
uInt4 (bp_letter_to_int4 (char_in)));
++pos;
if (!(pos % 2))
Advance (output, 1);
}
Close (output);
}
