void OIFReader::ReadOifLine(wstring oneline)
{
//process
if (oneline.substr(0, 6) == L"[Axis ")
{
axis_num++;
}
else
{
if (axis_num > -1)
{
size_t pos = oneline.find(L'=');
wstring str1 = oneline.substr(0, oneline.find_last_not_of(L' ', pos));
wstring str2 = oneline.substr(oneline.find_first_not_of(L' ', pos+1));
if (str1 == L"AxisCode")
{
if (cur_axis != axis_num)
{
cur_axis = axis_num;
axis_code.clear();
pix_unit.clear();
max_size.clear();
start_pos.clear();
end_pos.clear();
}
axis_code = str2;
}
else if (str1 == L"PixUnit")
{
if (cur_axis != axis_num)
{
cur_axis = axis_num;
axis_code.clear();
pix_unit.clear();
max_size.clear();
start_pos.clear();
end_pos.clear();
}
pix_unit = str2;
}
else if (str1 == L"MaxSize")
{
if (cur_axis != axis_num)
{
cur_axis = axis_num;
axis_code.clear();
pix_unit.clear();
max_size.clear();
start_pos.clear();
end_pos.clear();
}
max_size = str2;
}
else if (str1 == L"StartPosition")
{
if (cur_axis != axis_num)
{
cur_axis = axis_num;
axis_code.clear();
pix_unit.clear();
max_size.clear();
start_pos.clear();
end_pos.clear();
}
start_pos = str2;
}
else if (str1 == L"EndPosition")
{
if (cur_axis != axis_num)
{
cur_axis = axis_num;
axis_code.clear();
pix_unit.clear();
max_size.clear();
start_pos.clear();
end_pos.clear();
}
end_pos = str2;
}
}
}
if (oneline.substr(0, 9) == L"[Channel ")
{
light_type.clear();
chan_num++;
}
else
{
if (chan_num > -1)
{
size_t pos = oneline.find(L'=');
wstring str1 = oneline.substr(0, oneline.find_last_not_of(L' ', pos));
wstring str2 = oneline.substr(oneline.find_first_not_of(L' ', pos+1));
wstring str3 = L"Transmitted Light";
if (str1 == L"LightType") {
light_type = str2;
if (light_type.find(str3) != wstring::npos) {
for (int i = m_excitation_wavelength_list.size() -1; i >=0; i--) {
if (m_excitation_wavelength_list.at(i).chan_num == cur_chan) {
m_excitation_wavelength_list.at(i).wavelength = -1;
break;
}
}
}
}
else if (str1 == L"ExcitationWavelength")
{
if (cur_chan != chan_num)
{
cur_chan = chan_num;
WavelengthInfo info;
info.chan_num = cur_chan;
info.wavelength = WSTOD(str2);
if (light_type == L"Transmitted Light")
info.wavelength = -1;
m_excitation_wavelength_list.push_back(info);
}
}
}
}
//axis
if (!axis_code.empty() &&
!pix_unit.empty() &&
!max_size.empty() &&
!start_pos.empty() &&
!end_pos.empty())
{
//calculate
double spc = 0.0;
double dmax = WSTOD(max_size);
if (dmax > 0.0)
spc= fabs((WSTOD(end_pos)-
WSTOD(start_pos)))/
dmax;
if ((int64_t)pix_unit.find(L"nm")!=-1)
spc /= 1000.0;
if ((int64_t)axis_code.find(L"X")!=-1)
{
m_x_size = WSTOI(max_size);
m_xspc = spc;
}
else if ((int64_t)axis_code.find(L"Y")!=-1)
{
m_y_size = WSTOI(max_size);
m_yspc = spc;
}
else if ((int64_t)axis_code.find(L"Z")!=-1)
m_zspc = spc;
axis_code.clear();
pix_unit.clear();
max_size.clear();
start_pos.clear();
end_pos.clear();
}
}
void OIBReader::ReadOif(unsigned char *pbyData, size_t size)
{
if (!pbyData || !size)
return;
//reset
m_excitation_wavelength_list.clear();
m_x_size = 0;
m_y_size = 0;
m_xspc = 0.0;
m_yspc = 0.0;
m_zspc = 0.0;
uint16_t* data = (uint16_t*)pbyData;
size_t i = 1;
wstring oneline;
//axis info
wstring axis_code;
wstring pix_unit;
wstring max_size;
wstring start_pos;
wstring end_pos;
//axis count
int axis_num = -1;
int cur_axis = -1;
//channel count
int chan_num = -1;
int cur_chan = -1;
while (i<size/2)
{
if (data[i] != L'\n')
{
oneline.push_back(data[i]);
}
else
{
//process
if (oneline.substr(0, 6) == L"[Axis ")
{
axis_num++;
}
else
{
if (axis_num > -1)
{
size_t pos = oneline.find(L'=');
wstring str1 = oneline.substr(0, oneline.find_last_not_of(L' ', pos));
wstring str2 = oneline.substr(oneline.find_first_not_of(L' ', pos+1));
if (str1 == L"AxisCode")
{
if (cur_axis != axis_num)
{
cur_axis = axis_num;
axis_code.clear();
pix_unit.clear();
max_size.clear();
start_pos.clear();
end_pos.clear();
}
axis_code = str2;
}
else if (str1 == L"PixUnit")
{
if (cur_axis != axis_num)
{
cur_axis = axis_num;
axis_code.clear();
pix_unit.clear();
max_size.clear();
start_pos.clear();
end_pos.clear();
}
pix_unit = str2;
}
else if (str1 == L"MaxSize")
{
if (cur_axis != axis_num)
{
cur_axis = axis_num;
axis_code.clear();
pix_unit.clear();
max_size.clear();
start_pos.clear();
end_pos.clear();
}
max_size = str2;
}
else if (str1 == L"StartPosition")
{
if (cur_axis != axis_num)
{
cur_axis = axis_num;
axis_code.clear();
pix_unit.clear();
max_size.clear();
start_pos.clear();
end_pos.clear();
}
start_pos = str2;
}
else if (str1 == L"EndPosition")
{
if (cur_axis != axis_num)
{
cur_axis = axis_num;
axis_code.clear();
pix_unit.clear();
max_size.clear();
start_pos.clear();
end_pos.clear();
}
end_pos = str2;
}
}
}
if (oneline.substr(0, 9) == L"[Channel ")
{
light_type.clear();
chan_num++;
}
else
{
if (chan_num > -1)
{
size_t pos = oneline.find(L'=');
wstring str1 = oneline.substr(0, oneline.find_last_not_of(L' ', pos));
wstring str2 = oneline.substr(oneline.find_first_not_of(L' ', pos+1));
wstring str3 = L"Transmitted Light";
if (str1 == L"LightType") {
light_type = str2;
if (light_type.find(str3) != wstring::npos) {
for (int i = m_excitation_wavelength_list.size() - 1; i >= 0; i--) {
if (m_excitation_wavelength_list.at(i).chan_num == cur_chan) {
m_excitation_wavelength_list.at(i).wavelength = -1;
break;
}
}
}
}
else if (str1 == L"ExcitationWavelength")
{
if (cur_chan != chan_num)
{
cur_chan = chan_num;
WavelengthInfo info;
info.chan_num = cur_chan;
info.wavelength = WSTOD(str2.c_str());
if (light_type == L"Transmitted Light")
info.wavelength = -1;
m_excitation_wavelength_list.push_back(info);
}
}
}
}
//clear
oneline.clear();
}
//axis
if (!axis_code.empty() &&
!pix_unit.empty() &&
!max_size.empty() &&
!start_pos.empty() &&
!end_pos.empty())
{
//calculate
double spc = 0.0;
double dmax = WSTOD(max_size.c_str());
if (dmax > 0.0)
spc= fabs((WSTOD(end_pos.c_str())-
WSTOD(start_pos.c_str())))/
dmax;
if ((int64_t)pix_unit.find(L"nm")!=-1)
spc /= 1000.0;
if ((int64_t)axis_code.find(L"X")!=-1)
{
m_x_size = WSTOI(max_size.c_str());
m_xspc = spc;
}
else if ((int64_t)axis_code.find(L"Y")!=-1)
{
m_y_size = WSTOI(max_size.c_str());
m_yspc = spc;
}
else if ((int64_t)axis_code.find(L"Z")!=-1)
m_zspc = spc;
axis_code.clear();
pix_unit.clear();
max_size.clear();
start_pos.clear();
end_pos.clear();
}
i++;
}
if (m_xspc>0.0 && m_xspc<100.0 &&
m_yspc>0.0 && m_yspc<100.0)
{
m_valid_spc = true;
if (m_zspc<=0.0 || m_zspc>100.0)
m_zspc = max(m_xspc, m_yspc);
}
else
{
m_valid_spc = false;
m_xspc = 1.0;
m_yspc = 1.0;
m_zspc = 1.0;
}
}
