static void init()
{
self->takeDamage = self->active == TRUE ? takeDamage : NULL;
self->action = &entityWait;
addChain();
}
static void init()
{
addChain();
self->dirX = 0;
self->dirY = 0;
self->action = &entityWait;
}
static void init()
{
addChain();
addRay();
self->endY = getMapFloor(self->startX, self->startY);
self->action = &entityWait;
}
status
addChainTable(ChainTable ct, Any name, Any value)
{ Chain ch;
if ( (ch = getMemberHashTable((HashTable) ct, name)) )
addChain(ch, value);
else
appendHashTable((HashTable) ct, name, newObject(ClassChain, value, EAV));
succeed;
}
void RainbowTable::generateChain() {
Chain chain;
unsigned password;
password = chainsGenerator.generateRandomPassword();
sprintf(chain.head, "%u", password);
chainsGenerator.generateChain(&chain);
//printf("chain %i, head: %s, tail: %s \n",
//i, chain.head, chain.tail);
if (!findChain(chain.head, chain.tail)) {
addChain(chain.head, chain.tail);
}
}
static void init()
{
EntityList *list;
EntityList *l;
Entity *e;
if (strlen(self->objectiveName) == 0)
{
showErrorAndExit("Scale at %d %d has no name", (int)self->x, (int)self->y);
}
list = getEntitiesByObjectiveName(self->objectiveName);
for (l=list->next;l!=NULL;l=l->next)
{
e = l->entity;
if (e != self)
{
self->target = e;
break;
}
}
freeEntityList(list);
if (self->target == NULL)
{
showErrorAndExit("Scale could not find partner %s", self->objectiveName);
}
self->targetY = self->startY + (self->endY - self->startY) / 2;
addChain();
self->mental = getMapCeiling(self->x, self->y);
self->action = &entityWait;
}
static void start(void *data, const char *el, const char **attr)
{
int i;
struct userdata *d = (struct userdata *)data;
for (i = 0; states[i].element != NULL; i++) {
if (d->state != states[i].pstate)
continue;
if (!strcmp(el, states[i].element)) {
d->state = states[i].state;
break;
}
}
if (states[i].element == NULL)
die("E: Unknown element %s\n", el);
if (d->state == STATE_PAYLOAD)
d->payload = addPayload(d->config, attr);
if (d->state == STATE_PAYLOAD_CHAIN)
d->chain = addChain(d->config, d->payload);
}
void chainNet(char *chainFile, char *tSizes, char *qSizes,
char *tNet, char *qNet)
/* chainNet - Make alignment nets out of chains. */
{
struct lineFile *lf = lineFileOpen(chainFile, TRUE);
struct hash *qHash, *tHash;
struct chrom *qChromList, *tChromList, *tChrom, *qChrom;
struct chain *chain;
double lastScore = -1;
struct lm *lm = lmInit(0);
struct rbTreeNode **rbStack;
FILE *tNetFile = mustOpen(tNet, "w");
FILE *qNetFile = mustOpen(qNet, "w");
lmAllocArray(lm, rbStack, 256);
makeChroms(qSizes, lm, rbStack, &qHash, &qChromList);
makeChroms(tSizes, lm, rbStack, &tHash, &tChromList);
verbose(1, "Got %d chroms in %s, %d in %s\n", slCount(tChromList), tSizes,
slCount(qChromList), qSizes);
lineFileSetMetaDataOutput(lf, tNetFile);
lineFileSetMetaDataOutput(lf, qNetFile);
/* Loop through chain file building up net. */
while ((chain = chainRead(lf)) != NULL)
{
/* Make sure that input is really sorted. */
if (lastScore >= 0 && chain->score > lastScore)
errAbort("%s must be sorted in order of score", chainFile);
lastScore = chain->score;
if (chain->score < minScore)
{
break;
}
verbose(2, "chain %f (%d els) %s %d-%d %c %s %d-%d\n",
chain->score, slCount(chain->blockList),
chain->tName, chain->tStart, chain->tEnd,
chain->qStrand, chain->qName, chain->qStart, chain->qEnd);
qChrom = hashMustFindVal(qHash, chain->qName);
if (qChrom->size != chain->qSize)
errAbort("%s is %d in %s but %d in %s", chain->qName,
chain->qSize, chainFile,
qChrom->size, qSizes);
tChrom = hashMustFindVal(tHash, chain->tName);
if (tChrom->size != chain->tSize)
errAbort("%s is %d in %s but %d in %s", chain->tName,
chain->tSize, chainFile,
tChrom->size, tSizes);
if (!inclQuery(chain))
verbose(2, "skipping chain on query %s\n", chain->qName);
else
{
addChain(qChrom, tChrom, chain);
verbose(2, "%s has %d inserts, %s has %d\n", tChrom->name,
tChrom->spaces->n, qChrom->name, qChrom->spaces->n);
}
}
/* Build up other side of fills. It's just for historical
* reasons this is not done during the main build up.
* It's a little less efficient this way, but to change it
* some hard reverse strand issues would have to be juggled. */
verbose(1, "Finishing nets\n");
finishNet(qChromList, TRUE);
finishNet(tChromList, FALSE);
/* Write out basic net files. */
verbose(1, "writing %s\n", tNet);
outputNetSide(tChromList, tNetFile, FALSE);
verbose(1, "writing %s\n", qNet);
outputNetSide(qChromList, qNetFile, TRUE);
/* prevent SIGPIPE in preceding process if input is a pipe, consume remainder
* of input file since we stop before EOF. */
if (isPipe(lf->fd))
{
char *line;
while(lineFileNext(lf, &line, NULL))
continue;
}
lineFileClose(&lf);
if (verboseLevel() > 1)
printMem(stderr);
}
