void ProjectKWayPartition(ctrl_t *ctrl, graph_t *graph)
{
  idx_t i, j, k, nvtxs, nbnd, nparts, me, other, istart, iend, tid, ted;
  idx_t *xadj, *adjncy, *adjwgt;
  idx_t *cmap, *where, *bndptr, *bndind, *cwhere, *htable;
  graph_t *cgraph;

  WCOREPUSH;

  nparts = ctrl->nparts;

  cgraph = graph->coarser;
  cwhere = cgraph->where;

  nvtxs   = graph->nvtxs;
  cmap    = graph->cmap;
  xadj    = graph->xadj;
  adjncy  = graph->adjncy;
  adjwgt  = graph->adjwgt;

  AllocateKWayPartitionMemory(ctrl, graph);

  where  = graph->where;
  bndind = graph->bndind;
  bndptr = iset(nvtxs, -1, graph->bndptr);

  htable = iset(nparts, -1, iwspacemalloc(ctrl, nparts));

  /* Compute the required info for refinement */
  switch (ctrl->objtype) {
    case METIS_OBJTYPE_CUT:
      ASSERT(CheckBnd2(cgraph));
      {
        ckrinfo_t *myrinfo;
        cnbr_t *mynbrs;

        /* go through and project partition and compute id/ed for the nodes */
        for (i=0; i<nvtxs; i++) {
          k        = cmap[i];
          where[i] = cwhere[k];
          cmap[i]  = cgraph->ckrinfo[k].ed;  /* For optimization */
        }

        memset(graph->ckrinfo, 0, sizeof(ckrinfo_t)*nvtxs);
        cnbrpoolReset(ctrl);

        for (nbnd=0, i=0; i<nvtxs; i++) {
          istart = xadj[i];
          iend   = xadj[i+1];

          myrinfo = graph->ckrinfo+i;

          if (cmap[i] == 0) { /* Interior node. Note that cmap[i] = crinfo[cmap[i]].ed */
            for (tid=0, j=istart; j<iend; j++) 
              tid += adjwgt[j];

            myrinfo->id   = tid;
            myrinfo->inbr = -1;
          }
          else { /* Potentially an interface node */
            myrinfo->inbr = cnbrpoolGetNext(ctrl, iend-istart+1);
            mynbrs        = ctrl->cnbrpool + myrinfo->inbr;

            me = where[i];
            for (tid=0, ted=0, j=istart; j<iend; j++) {
              other = where[adjncy[j]];
              if (me == other) {
                tid += adjwgt[j];
              }
              else {
                ted += adjwgt[j];
                if ((k = htable[other]) == -1) {
                  htable[other]               = myrinfo->nnbrs;
                  mynbrs[myrinfo->nnbrs].pid  = other;
                  mynbrs[myrinfo->nnbrs++].ed = adjwgt[j];
                }
                else {
                  mynbrs[k].ed += adjwgt[j];
                }
              }
            }
            myrinfo->id = tid;
            myrinfo->ed = ted;
      
            /* Remove space for edegrees if it was interior */
            if (ted == 0) { 
              ctrl->nbrpoolcpos -= iend-istart+1;
              myrinfo->inbr      = -1;
            }
            else {
              if (ted-tid >= 0) 
                BNDInsert(nbnd, bndind, bndptr, i); 
      
              for (j=0; j<myrinfo->nnbrs; j++)
                htable[mynbrs[j].pid] = -1;
            }
          }
        }
      
        graph->nbnd = nbnd;

      }
      ASSERT(CheckBnd2(graph));
      break;

    case METIS_OBJTYPE_VOL:
      {
        vkrinfo_t *myrinfo;
        vnbr_t *mynbrs;

        ASSERT(cgraph->minvol == ComputeVolume(cgraph, cgraph->where));

        /* go through and project partition and compute id/ed for the nodes */
        for (i=0; i<nvtxs; i++) {
          k        = cmap[i];
          where[i] = cwhere[k];
          cmap[i]  = cgraph->vkrinfo[k].ned;  /* For optimization */
        }

        memset(graph->vkrinfo, 0, sizeof(vkrinfo_t)*nvtxs);
        vnbrpoolReset(ctrl);

        for (i=0; i<nvtxs; i++) {
          istart = xadj[i];
          iend   = xadj[i+1];
          myrinfo = graph->vkrinfo+i;

          if (cmap[i] == 0) { /* Note that cmap[i] = crinfo[cmap[i]].ed */
            myrinfo->nid  = iend-istart;
            myrinfo->inbr = -1;
          }
          else { /* Potentially an interface node */
            myrinfo->inbr = vnbrpoolGetNext(ctrl, iend-istart+1);
            mynbrs        = ctrl->vnbrpool + myrinfo->inbr;

            me = where[i];
            for (tid=0, ted=0, j=istart; j<iend; j++) {
              other = where[adjncy[j]];
              if (me == other) {
                tid++;
              }
              else {
                ted++;
                if ((k = htable[other]) == -1) {
                  htable[other]                = myrinfo->nnbrs;
                  mynbrs[myrinfo->nnbrs].gv    = 0;
                  mynbrs[myrinfo->nnbrs].pid   = other;
                  mynbrs[myrinfo->nnbrs++].ned = 1;
                }
                else {
                  mynbrs[k].ned++;
                }
              }
            }
            myrinfo->nid = tid;
            myrinfo->ned = ted;
      
            /* Remove space for edegrees if it was interior */
            if (ted == 0) { 
              ctrl->nbrpoolcpos -= iend-istart+1;
              myrinfo->inbr = -1;
            }
            else {
              for (j=0; j<myrinfo->nnbrs; j++)
                htable[mynbrs[j].pid] = -1;
            }
          }
        }
      
        ComputeKWayVolGains(ctrl, graph);

        ASSERT(graph->minvol == ComputeVolume(graph, graph->where));
      }
      break;

    default:
      gk_errexit(SIGERR, "Unknown objtype of %d\n", ctrl->objtype);
  }

  graph->mincut = cgraph->mincut;
  icopy(nparts*graph->ncon, cgraph->pwgts, graph->pwgts);

  FreeGraph(&graph->coarser);
  graph->coarser = NULL;

  WCOREPOP;
}
예제 #2
0
파일: contig.c 프로젝트: crazyzlj/SEIMS
void MoveGroupContigForCut(ctrl_t *ctrl, graph_t *graph, idx_t to, idx_t gid,
                           idx_t *ptr, idx_t *ind) {
    idx_t i, ii, iii, j, jj, k, l, nvtxs, nbnd, from, me;
    idx_t *xadj, *adjncy, *adjwgt, *where, *bndptr, *bndind;
    ckrinfo_t *myrinfo;
    cnbr_t *mynbrs;

    nvtxs = graph->nvtxs;
    xadj = graph->xadj;
    adjncy = graph->adjncy;
    adjwgt = graph->adjwgt;

    where = graph->where;
    bndptr = graph->bndptr;
    bndind = graph->bndind;

    nbnd = graph->nbnd;

    for (iii = ptr[gid]; iii < ptr[gid + 1]; iii++) {
        i = ind[iii];
        from = where[i];

        myrinfo = graph->ckrinfo + i;
        if (myrinfo->inbr == -1) {
            myrinfo->inbr = cnbrpoolGetNext(ctrl, xadj[i + 1] - xadj[i] + 1);
            myrinfo->nnbrs = 0;
        }
        mynbrs = ctrl->cnbrpool + myrinfo->inbr;

        /* find the location of 'to' in myrinfo or create it if it is not there */
        for (k = 0; k < myrinfo->nnbrs; k++) {
            if (mynbrs[k].pid == to) {
                break;
            }
        }
        if (k == myrinfo->nnbrs) {
            mynbrs[k].pid = to;
            mynbrs[k].ed = 0;
            myrinfo->nnbrs++;
        }

        graph->mincut -= mynbrs[k].ed - myrinfo->id;

        /* Update ID/ED and BND related information for the moved vertex */
        iaxpy(graph->ncon, 1, graph->vwgt + i * graph->ncon, 1, graph->pwgts + to * graph->ncon, 1);
        iaxpy(graph->ncon, -1, graph->vwgt + i * graph->ncon, 1, graph->pwgts + from * graph->ncon, 1);
        UpdateMovedVertexInfoAndBND(i, from, k, to, myrinfo, mynbrs, where, nbnd,
                                    bndptr, bndind, BNDTYPE_REFINE);

        /* Update the degrees of adjacent vertices */
        for (j = xadj[i]; j < xadj[i + 1]; j++) {
            ii = adjncy[j];
            me = where[ii];
            myrinfo = graph->ckrinfo + ii;

            UpdateAdjacentVertexInfoAndBND(ctrl, ii, xadj[ii + 1] - xadj[ii], me,
                                           from, to, myrinfo, adjwgt[j], nbnd, bndptr, bndind, BNDTYPE_REFINE);
        }

        ASSERT(CheckRInfo(ctrl, graph->ckrinfo + i));
    }

    graph->nbnd = nbnd;
}
void ComputeKWayPartitionParams(ctrl_t *ctrl, graph_t *graph)
{
  idx_t i, j, k, l, nvtxs, ncon, nparts, nbnd, mincut, me, other;
  idx_t *xadj, *vwgt, *adjncy, *adjwgt, *pwgts, *where, *bndind, *bndptr;

  nparts = ctrl->nparts;

  nvtxs  = graph->nvtxs;
  ncon   = graph->ncon;
  xadj   = graph->xadj;
  vwgt   = graph->vwgt;
  adjncy = graph->adjncy;
  adjwgt = graph->adjwgt;

  where  = graph->where;
  pwgts  = iset(nparts*ncon, 0, graph->pwgts);
  bndind = graph->bndind;
  bndptr = iset(nvtxs, -1, graph->bndptr);

  nbnd = mincut = 0;

  /* Compute pwgts */
  if (ncon == 1) {
    for (i=0; i<nvtxs; i++) {
      ASSERT(where[i] >= 0 && where[i] < nparts);
      pwgts[where[i]] += vwgt[i];
    }
  }
  else {
    for (i=0; i<nvtxs; i++) {
      me = where[i];
      for (j=0; j<ncon; j++)
        pwgts[me*ncon+j] += vwgt[i*ncon+j];
    }
  }

  /* Compute the required info for refinement */
  switch (ctrl->objtype) {
    case METIS_OBJTYPE_CUT:
      {
        ckrinfo_t *myrinfo;
        cnbr_t *mynbrs;

        memset(graph->ckrinfo, 0, sizeof(ckrinfo_t)*nvtxs);
        cnbrpoolReset(ctrl);

        for (i=0; i<nvtxs; i++) {
          me      = where[i];
          myrinfo = graph->ckrinfo+i;

          for (j=xadj[i]; j<xadj[i+1]; j++) {
            if (me == where[adjncy[j]])
              myrinfo->id += adjwgt[j];
            else
              myrinfo->ed += adjwgt[j];
          }

          /* Time to compute the particular external degrees */
          if (myrinfo->ed > 0) {
            mincut += myrinfo->ed;

            myrinfo->inbr = cnbrpoolGetNext(ctrl, xadj[i+1]-xadj[i]+1);
            mynbrs        = ctrl->cnbrpool + myrinfo->inbr;

            for (j=xadj[i]; j<xadj[i+1]; j++) {
              other = where[adjncy[j]];
              if (me != other) {
                for (k=0; k<myrinfo->nnbrs; k++) {
                  if (mynbrs[k].pid == other) {
                    mynbrs[k].ed += adjwgt[j];
                    break;
                  }
                }
                if (k == myrinfo->nnbrs) {
                  mynbrs[k].pid = other;
                  mynbrs[k].ed  = adjwgt[j];
                  myrinfo->nnbrs++;
                }
              }
            }

            ASSERT(myrinfo->nnbrs <= xadj[i+1]-xadj[i]);

            /* Only ed-id>=0 nodes are considered to be in the boundary */
            if (myrinfo->ed-myrinfo->id >= 0)
              BNDInsert(nbnd, bndind, bndptr, i);
          }
          else {
            myrinfo->inbr = -1;
          }
        }

        graph->mincut = mincut/2;
        graph->nbnd   = nbnd;

      }
      ASSERT(CheckBnd2(graph));
      break;

    case METIS_OBJTYPE_VOL:
      {
        vkrinfo_t *myrinfo;
        vnbr_t *mynbrs;

        memset(graph->vkrinfo, 0, sizeof(vkrinfo_t)*nvtxs);
        vnbrpoolReset(ctrl);

        /* Compute now the id/ed degrees */
        for (i=0; i<nvtxs; i++) {
          me      = where[i];
          myrinfo = graph->vkrinfo+i;
      
          for (j=xadj[i]; j<xadj[i+1]; j++) {
            if (me == where[adjncy[j]]) 
              myrinfo->nid++;
            else 
              myrinfo->ned++;
          }
      
          /* Time to compute the particular external degrees */
          if (myrinfo->ned > 0) { 
            mincut += myrinfo->ned;

            myrinfo->inbr = vnbrpoolGetNext(ctrl, xadj[i+1]-xadj[i]+1);
            mynbrs        = ctrl->vnbrpool + myrinfo->inbr;

            for (j=xadj[i]; j<xadj[i+1]; j++) {
              other = where[adjncy[j]];
              if (me != other) {
                for (k=0; k<myrinfo->nnbrs; k++) {
                  if (mynbrs[k].pid == other) {
                    mynbrs[k].ned++;
                    break;
                  }
                }
                if (k == myrinfo->nnbrs) {
                  mynbrs[k].gv  = 0;
                  mynbrs[k].pid = other;
                  mynbrs[k].ned = 1;
                  myrinfo->nnbrs++;
                }
              }
            }
            ASSERT(myrinfo->nnbrs <= xadj[i+1]-xadj[i]);
          }
          else {
            myrinfo->inbr = -1;
          }
        }
        graph->mincut = mincut/2;
      
        ComputeKWayVolGains(ctrl, graph);
      }
      ASSERT(graph->minvol == ComputeVolume(graph, graph->where));
      break;
    default:
      gk_errexit(SIGERR, "Unknown objtype of %d\n", ctrl->objtype);
  }

}
예제 #4
0
파일: minconn.c 프로젝트: 151706061/sofa
void MoveGroupMinConnForCut(ctrl_t *ctrl, graph_t *graph, idx_t to, idx_t nind, 
         idx_t *ind)
{
  idx_t i, ii, j, jj, k, l, nvtxs, nbnd, from, me;
  idx_t *xadj, *adjncy, *adjwgt, *where, *bndptr, *bndind;
  ckrinfo_t *myrinfo;
  cnbr_t *mynbrs;

  nvtxs  = graph->nvtxs;
  xadj   = graph->xadj;
  adjncy = graph->adjncy;
  adjwgt = graph->adjwgt;

  where  = graph->where;
  bndptr = graph->bndptr;
  bndind = graph->bndind;

  nbnd = graph->nbnd;

  while (--nind>=0) {
    i    = ind[nind];
    from = where[i];

    myrinfo = graph->ckrinfo+i;
    if (myrinfo->inbr == -1) {
      myrinfo->inbr  = cnbrpoolGetNext(ctrl, xadj[i+1]-xadj[i]+1);
      myrinfo->nnbrs = 0;
    }
    mynbrs = ctrl->cnbrpool + myrinfo->inbr;

    /* find the location of 'to' in myrinfo or create it if it is not there */
    for (k=0; k<myrinfo->nnbrs; k++) {
      if (mynbrs[k].pid == to)
        break;
    }
    if (k == myrinfo->nnbrs) {
      ASSERT(k < xadj[i+1]-xadj[i]);
      mynbrs[k].pid = to;
      mynbrs[k].ed  = 0;
      myrinfo->nnbrs++;
    }

    /* Update pwgts */
    iaxpy(graph->ncon,  1, graph->vwgt+i*graph->ncon, 1, graph->pwgts+to*graph->ncon,   1);
    iaxpy(graph->ncon, -1, graph->vwgt+i*graph->ncon, 1, graph->pwgts+from*graph->ncon, 1);

    /* Update mincut */
    graph->mincut -= mynbrs[k].ed-myrinfo->id;

    /* Update subdomain connectivity graph to reflect the move of 'i' */
    UpdateEdgeSubDomainGraph(ctrl, from, to, myrinfo->id-mynbrs[k].ed, NULL);

    /* Update ID/ED and BND related information for the moved vertex */
    UpdateMovedVertexInfoAndBND(i, from, k, to, myrinfo, mynbrs, where, nbnd, 
        bndptr, bndind, BNDTYPE_REFINE);

    /* Update the degrees of adjacent vertices */
    for (j=xadj[i]; j<xadj[i+1]; j++) {
      ii = adjncy[j];
      me = where[ii];
      myrinfo = graph->ckrinfo+ii;

      UpdateAdjacentVertexInfoAndBND(ctrl, ii, xadj[ii+1]-xadj[ii], me,
          from, to, myrinfo, adjwgt[j], nbnd, bndptr, bndind, BNDTYPE_REFINE);

      /* Update subdomain graph to reflect the move of 'i' for domains other 
         than 'from' and 'to' */
      if (me != from && me != to) {
        UpdateEdgeSubDomainGraph(ctrl, from, me, -adjwgt[j], NULL);
        UpdateEdgeSubDomainGraph(ctrl, to, me, adjwgt[j], NULL);
      }
    }
  }

  ASSERT(ComputeCut(graph, where) == graph->mincut);

  graph->nbnd = nbnd;

}