void process_init(struct thorium_actor *self) { struct process *concrete_self; int argc; char **argv; argc = thorium_actor_argc(self); argv = thorium_actor_argv(self); concrete_self = thorium_actor_concrete_actor(self); core_vector_init(&concrete_self->actors, sizeof(int)); thorium_actor_add_action(self, ACTION_START, process_start); thorium_actor_add_action(self, ACTION_ASK_TO_STOP, process_stop); thorium_actor_add_action(self, ACTION_PING, process_ping); thorium_actor_add_action(self, ACTION_PING_REPLY, process_ping_reply); thorium_actor_add_action(self, ACTION_NOTIFY, process_notify); concrete_self->passed = 0; concrete_self->failed = 0; concrete_self->events = 0; concrete_self->minimum_buffer_size = 16; concrete_self->maximum_buffer_size = 512*1024; if (core_command_has_argument(argc, argv, MIN_BUFFER_SIZE_OPTION)) { concrete_self->maximum_buffer_size = core_command_get_argument_value_int(argc, argv, MIN_BUFFER_SIZE_OPTION); } if (core_command_has_argument(argc, argv, MAX_BUFFER_SIZE_OPTION)) { concrete_self->maximum_buffer_size = core_command_get_argument_value_int(argc, argv, MAX_BUFFER_SIZE_OPTION); } concrete_self->event_count = 100000; if (core_command_has_argument(argc, argv, EVENT_COUNT_OPTION)) { concrete_self->event_count = core_command_get_argument_value_int(argc, argv, EVENT_COUNT_OPTION); } concrete_self->concurrent_event_count = 8; if (core_command_has_argument(argc, argv, CONCURRENT_EVENT_COUNT_OPTION)) { concrete_self->concurrent_event_count = core_command_get_argument_value_int(argc, argv, CONCURRENT_EVENT_COUNT_OPTION); } concrete_self->active_messages = 0; printf("%s/%d using %s %d %s %d %s %d %s %d\n", thorium_actor_script_name(self), thorium_actor_name(self), MIN_BUFFER_SIZE_OPTION, concrete_self->minimum_buffer_size, MAX_BUFFER_SIZE_OPTION, concrete_self->maximum_buffer_size, EVENT_COUNT_OPTION, concrete_self->event_count, CONCURRENT_EVENT_COUNT_OPTION, concrete_self->concurrent_event_count); }
int biosal_command_get_kmer_length(int argc, char **argv) { int kmer_length; int provided_value; kmer_length = BIOSAL_DEFAULT_KMER_LENGTH; if (core_command_has_argument(argc, argv, "-k")) { provided_value = core_command_get_argument_value_int(argc, argv, "-k"); /* * Use a odd kmer length */ if (provided_value % 2 == 0) { ++provided_value; } kmer_length = provided_value; } /* printf("DEBUG kmer_length %d\n", kmer_length); */ return kmer_length; }
static void source_init(struct thorium_actor *self) { struct source *concrete_self; int argc; char **argv; concrete_self = thorium_actor_concrete_actor(self); concrete_self->message_count = 0; argc = thorium_actor_argc(self); argv = thorium_actor_argv(self); concrete_self->event_count = DEFAULT_EVENT_COUNT; if (core_command_has_argument(argc, argv, OPTION_EVENT_COUNT)) { concrete_self->event_count = core_command_get_argument_value_int(argc, argv, OPTION_EVENT_COUNT); } core_vector_init(&concrete_self->targets, sizeof(int)); core_vector_set_memory_pool(&concrete_self->targets, thorium_actor_get_persistent_memory_pool(self)); concrete_self->target = -1; }
int biosal_command_get_minimum_coverage(int argc, char **argv) { int value; value = BIOSAL_DEFAULT_MINIMUM_COVERAGE; if (core_command_has_argument(argc, argv, "-minimum-coverage")) { value = core_command_get_argument_value_int(argc, argv, "-minimum-coverage"); } return value; }