int main(void) {
// setup:
parse_config_file(".config");
open_status_file_for_reading_and_writing();
read_status_file();
create_directory_if_necessary(location_of_raw_datafiles);
generate_new_base_filename();
setup_pci(card_id);
readout_all_pending_data();
setup_filenames_for_fiber();
if (init_camac("CAMAC_config.txt")) {
cerr << "ERROR: could not connect to CAMAC crate" << endl;
// exit(7);
}
// if (CAMAC_initialized) {
// CAMAC_initialize_3377s();
open_CAMAC_file();
// }
setup_to_catch_ctrl_c(close_all_files);
open_logfile();
open_files_for_all_enabled_fiber_channels();
unsigned short int beginning_window = 0;
unsigned short int ending_window = 63;
set_start_and_end_windows(beginning_window, ending_window);
usleep(50000);
// testing:
should_soft_trigger = true;
// actual running:
while (1) {
wait_for_start_of_spill();
while (spill_is_active()) {
readout_an_event(true);
read_data_from_CAMAC_and_write_to_CAMAC_file();
// CAMAC_read_3377s();
printf("\n");
}
// increment_spill_number();
// write_status_file();
// generate_new_base_filename();
// split_fiber_file_to_prepare_for_next_spill();
// split_CAMAC_file_to_prepare_for_next_spill();
// usleep(250000);
// sync();
}
// cleanup:
close_all_files();
return 0;
}
void oracle::save_predictions(const string& dirname) const {
cout << "Saving all predictions." << endl;
// Get phenotypes and genes to predict for
const gvector& genes = dest->gene_vector(); assert(genes.size() > 0);
const pvector& phenes = dest->phene_vector();
create_directory_if_necessary(dirname);
// For each phenotype, get the matrix column we want to print, and also
// what is known.
cout << "Total items to save: " << phenes.size() << endl << endl;
progress_display show_progress(phenes.size());
for (pvector::const_iterator j = phenes.begin(); j != phenes.end(); ++j, ++show_progress)
// Map genes to the prediction value and write them
write_predictions_by_phenotype(dirname, *j, find_predictions_by_phenotype(*j, genes));
}