int problem3_main(){
std::ofstream fout1("problem3.30.txt");
solve(30.0 / 180.0 * acos(-1), fout1);
fout1.close();
std::ofstream fout2("problem3.40.txt");
solve(40.0 / 180.0 * acos(-1), fout2);
fout2.close();
std::ofstream fout3("problem3.50.txt");
solve(50.0 / 180.0 * acos(-1), fout3);
fout3.close();
B2_M = 0.0;
std::ofstream fout4("problem3-no-air.30.txt");
solve(30.0 / 180.0 * acos(-1), fout4);
fout4.close();
std::ofstream fout5("problem3-no-air.40.txt");
solve(40.0 / 180.0 * acos(-1), fout5);
fout5.close();
std::ofstream fout6("problem3-no-air.50.txt");
solve(50.0 / 180.0 * acos(-1), fout6);
fout6.close();
return 0;
}
int main ()
{
string inVec1, inVec2;
ShiftRegister UUT1;
ShiftRegHuff UUT2;
ifstream finp1 ("indata1.tst");
ofstream fout1 ("outdata1.tst");
ifstream finp2 ("indata2.tst");
ofstream fout2 ("outdata2.tst");
char stop_in1 ('0');
char stop_in2 ('0');
finp1 >> inVec1; // Read in first line of testbench data
while (stop_in1 != '.')
{
UUT1.load_input(inVec1); // Load inputs into ShiftRegister
UUT1.update_reg(); // Compute operation based on mode
UUT1.set_output(); // Set DFFs based on computed values
fout1 << UUT1.output_reg(); // Output data to external file
// Gather next data input:
finp1 >> inVec1;
stop_in1 = inVec1[0];
}
fout1 << "END FILESTREAM";
/// Now for the Huffman Model (with the worst case delays):
finp2 >> inVec2; // Read in first line of testbench data
CombLogic CL; // Define combinational logic class
while (stop_in2 != '.')
{
UUT2.load_input(inVec2); // Load inputs into ShiftRegister
CL.update_reg(UUT2); // Apply combinational logic
UUT2.set_output(); // Set DFFs based on computed values
fout2 << UUT2.output_reg(); // Output data to external file
// Gather next data input:
finp2 >> inVec2;
stop_in2 = inVec2[0];
}
return 0;
}
void LSH_DFE::compare_hash_result(){
assert(m_new_grid_dfe.size() == m_new_grid_cpu.size());
int counter = 0;
for(unsigned int i=0; i<m_new_grid_dfe.size(); i++){
if((m_new_grid_dfe[i].first == m_new_grid_cpu[i].first) && (m_new_grid_dfe[i].second == m_new_grid_cpu[i].second))
counter++;
}
cout<<counter<<" same over "<<m_new_grid_cpu.size()<<endl;
if(counter != m_new_grid_cpu.size()){
cout<<"result is not the same, write result to answer_cpu/dfe"<<endl;
std::ofstream fout0("answer_cpu");
for(unsigned int i=0; i<m_new_grid_cpu.size(); i++)
fout0<<m_new_grid_cpu[i].first<<" "<<m_new_grid_cpu[i].second<<endl;
fout0.close();
std::ofstream fout1("answer_dfe");
for(unsigned int i=0; i<m_new_grid_dfe.size(); i++)
fout1<<m_new_grid_dfe[i].first<<" "<<m_new_grid_dfe[i].second<<endl;
fout1.close();
}
}
// protected
void
FileOutputStreamTestCase::ctors (void)
{
File f1 (TEST_FILE_NAME);
if (f1.exists () == false)
f1.create ();
// open mode
FileOutputStream fout (TEST_FILE_NAME, OPEN_MODE);
fout.close ();
// open or create mode
File file (TEST_FILE_NAME);
FileOutputStream fout1 (file, OPEN_OR_CREATE_MODE);
fout1.close ();
// read_share
FileOutputStream fout2(TEST_FILE_NAME, CREATE_MODE, READ_SHARE);
fout2.close ();
}
//vector<double> DefaultVector; // just used to free memory from vectors.
int tracking(string thestring, double iterNbX, double iterNbY){
double PI=TMath::Pi();
//string thestring = "Position_REF2X_42_48";
string txtfilename = thestring + ".txt";
string residualHead = "rPhi_residual_";
string residualMeanHead = "rPhi_residualMean_";
string residualSigmaHead="rPhi_residualSigma_";
string chi2Head = "rPhi_trackChi2_";
string iterHead = "Iteration_";
//fstream fout2("myresidual.txt",ios::out);
double pREF2X=0.0, pREF2Y=0.0;
double pREF3X=0.0, pREF3Y=0.0;
double pUVA3X=0.0, pUVA3Y=0.0;
double pREF1X=0.0, pREF1Y=0.0;
//double pZZ1=0.0, pZZ2=0.0;
double pEta5=0.0;
const int NNNNN = 6447;
double vpREF2X[NNNNN]; double vpREF2Y[NNNNN];
double vpREF3X[NNNNN]; double vpREF3Y[NNNNN];
double vpUVA3X[NNNNN]; double vpUVA3Y[NNNNN];
double vpREF1X[NNNNN]; double vpREF1Y[NNNNN];
//vector<double> vpZZ1; vector<double> vpZZ2;
double vpEta5[NNNNN];
double shiREF2X=12.26791212, shiREF2Y=2.02708225;
double shiREF3X=7.4824985, shiREF3Y=-2.35562;
double shiUVA3X=-0.7097, shiUVA3Y=15.75778;
double shiREF1X=-9.92822, shiREF1Y=-0.68756;
double shiEta5=0.0;//0.01509;
double preshiREF2X=-2265, preshiREF2Y=-32; //2127.4275
double preshiREF3X=-2265, preshiREF3Y=-32;
double preshiUVA3X=-2265, preshiUVA3Y=-32;
double preshiREF1X=-2265, preshiREF1Y=-32;
double aREF3REF2=0.0056995;//start angle: 0.01197;
double aUVA3REF2=-0.013489;//0.02807;//start angle: 0.01102
double aREF1REF2=-0.044254312;//-0.0171;//start angle: 0.008273;
double aEta5REF2=0.0;//0.008098;
double tempREF2X, tempREF2Y, tempREF3X, tempREF3Y, tempUVA3X, tempUVA3Y, tempREF1X, tempREF1Y, tempEta5;
double meanREF2X=0.0, meanREF2Y=0.0, meanREF3X=0.0, meanREF3Y=0.0, meanUVA3X=0.0, meanUVA3Y=0.0, meanREF1X=0.0, meanREF1Y=0.0, meanEta5=0.0;
double sigmaREF2X=0.0,sigmaREF2Y=0.0,sigmaREF3X=0.0,sigmaREF3Y=0.0,sigmaUVA3X=0.0,sigmaUVA3Y=0.0,sigmaREF1X=0.0,sigmaREF1Y=0.0,sigmaEta5=0.0;
double meanXChi2=0.0,meanYChi2=0.0, totalChi2=0.0; // chi square of tracks.
double maximum=0.0, rms=0.0, lRange=0.0, hRange=0.0;
TH1D* hpREF2X=0;
TH1D* hpREF2Y = 0;
TH1D* hpREF3X = 0;
TH1D* hpREF3Y = 0;
TH1D* hpUVA3X = 0;
TH1D* hpUVA3Y = 0;
TH1D* hpREF1X = 0;
TH1D* hpREF1Y = 0;
TH1D* hpEta5 =0;
TH1D* residualREF2X = 0;
TH1D* residualREF2Y = 0;
TH1D* residualREF3X = 0;
TH1D* residualREF3Y = 0;
TH1D* residualUVA3X = 0;
TH1D* residualUVA3Y = 0;
TH1D* residualREF1X = 0;
TH1D* residualREF1Y = 0;
TH1D* residualEta5 = 0;
TH1D* angleREF3=0;
TH1D* angleUVA3=0;
TH1D* angleREF1=0;
TH1D* angleEta5=0;
TH1D* xTrackChi2=0;
TH1D* yTrackChi2=0;
preshiREF2X = -1810-iterNbX;// - iterNbX*2;
preshiREF3X=preshiREF2X; preshiUVA3X=preshiREF2X; preshiREF1X=preshiREF2X;
preshiREF2Y = -40.0 + iterNbY*0.2;
preshiREF3Y = preshiREF2Y; preshiUVA3Y = preshiREF2Y; preshiREF1Y = preshiREF2Y;
char cp2x[20]; sprintf(cp2x,"%.2f",preshiREF2X);
char cp2y[20]; sprintf(cp2y,"%.2f",preshiREF2Y);
string fout1name = iterHead + thestring + "_inclusive_X_" + cp2x + ".txt"; //TString::Itoa(preshiREF2X,10).Data()
//string fout3name = residualSigmaHead+ thestring + "_inclusive_X_" + cp2x + ".txt"; //TString::Itoa(preshiREF2X,10).Data()
//string fout2name = chi2Head + thestring + "_inclusive_X_" + cp2x + ".txt"; //TString::Itoa(preshiREF2X,10).Data()
fstream fout1(fout1name.c_str(),ios::out|ios::app);
//fstream fout3(fout3name.c_str(),ios::out|ios::app);
//fstream fout2(fout2name.c_str(),ios::out|ios::app);
fstream fin(txtfilename.c_str(),ios::in);
//if(!fin){cout<<"file not read"<<endl; return;}
//else cout<<"processing "<<txtfilename<<endl;
cout<<iterNbX<<"\t"<<iterNbY<<"\tX "<<preshiREF2X<<"\tY "<<preshiREF2Y<<endl;
int nbLines=0;
while(fin>>pREF2X>>pREF2Y>>pREF3X>>pREF3Y>>pUVA3X>>pUVA3Y>>pREF1X>>pREF1Y>>pEta5){
vpREF2X[nbLines]=pREF2X; vpREF2Y[nbLines]=pREF2Y; vpREF3X[nbLines]=pREF3X; vpREF3Y[nbLines]=pREF3Y;
vpUVA3X[nbLines]=pUVA3X; vpUVA3Y[nbLines]=pUVA3Y; vpREF1X[nbLines]=pREF1X; vpREF1Y[nbLines]=pREF1Y;
vpEta5[nbLines]=pEta5;
//shift
vpREF2X[nbLines] -= shiREF2X; vpREF2Y[nbLines] -= shiREF2Y;
vpREF3X[nbLines] -= shiREF3X; vpREF3Y[nbLines] -= shiREF3Y;
vpUVA3X[nbLines] -= shiUVA3X; vpUVA3Y[nbLines] -= shiUVA3Y;
vpREF1X[nbLines] -= shiREF1X; vpREF1Y[nbLines] -= shiREF1Y;
// vpEta5[nbLines] ;
//rotate
tempREF2X=vpREF2X[nbLines]; tempREF2Y=vpREF2Y[nbLines]; tempREF3X=vpREF3X[nbLines]; tempREF3Y=vpREF3Y[nbLines];
tempUVA3X=vpUVA3X[nbLines]; tempUVA3Y=vpUVA3Y[nbLines]; tempREF1X=vpREF1X[nbLines]; tempREF1Y=vpREF1Y[nbLines];
vpREF3X[nbLines]=tempREF3X*cos(aREF3REF2)-tempREF3Y*sin(aREF3REF2);
vpREF3Y[nbLines]=tempREF3X*sin(aREF3REF2)+tempREF3Y*cos(aREF3REF2);
vpUVA3X[nbLines]=tempUVA3X*cos(aUVA3REF2)-tempUVA3Y*sin(aUVA3REF2);
vpUVA3Y[nbLines]=tempUVA3X*sin(aUVA3REF2)+tempUVA3Y*cos(aUVA3REF2);
vpREF1X[nbLines]=tempREF1X*cos(aREF1REF2)-tempREF1Y*sin(aREF1REF2);
vpREF1Y[nbLines]=tempREF1X*sin(aREF1REF2)+tempREF1Y*cos(aREF1REF2);
vpEta5[nbLines] -= aEta5REF2;
//change origin, move in X and Y
vpREF2X[nbLines] -= preshiREF2X; vpREF2Y[nbLines] -= preshiREF2Y;
vpREF3X[nbLines] -= preshiREF3X; vpREF3Y[nbLines] -= preshiREF3Y;
vpUVA3X[nbLines] -= preshiUVA3X; vpUVA3Y[nbLines] -= preshiUVA3Y;
vpREF1X[nbLines] -= preshiREF1X; vpREF1Y[nbLines] -= preshiREF1Y;
//transfer to (r,phi) position
double rREF2 = sqrt(vpREF2X[nbLines]*vpREF2X[nbLines]+vpREF2Y[nbLines]*vpREF2Y[nbLines]);
double phiREF2 = 0.0; if(vpREF2X[nbLines]!=0.0) phiREF2 = atan(vpREF2Y[nbLines]/vpREF2X[nbLines]);
double rREF3 = sqrt(vpREF3X[nbLines]*vpREF3X[nbLines]+vpREF3Y[nbLines]*vpREF3Y[nbLines]);
double phiREF3 = 0.0; if(vpREF3X[nbLines]!=0.0) phiREF3 = atan(vpREF3Y[nbLines]/vpREF3X[nbLines]);
double rUVA3 = sqrt(vpUVA3X[nbLines]*vpUVA3X[nbLines]+vpUVA3Y[nbLines]*vpUVA3Y[nbLines]);
double phiUVA3 = 0.0; if(vpUVA3X[nbLines]!=0.0) phiUVA3 = atan(vpUVA3Y[nbLines]/vpUVA3X[nbLines]);
double rREF1 = sqrt(vpREF1X[nbLines]*vpREF1X[nbLines]+vpREF1Y[nbLines]*vpREF1Y[nbLines]);
double phiREF1 = 0.0; if(vpREF1X[nbLines]!=0.0) phiREF1 = atan(vpREF1Y[nbLines]/vpREF1X[nbLines]);
//asignment new r, phi position values to the vector. Note that from now on the vectors vp.. cantains r and phi values
vpREF2X[nbLines]=rREF2; vpREF2Y[nbLines]=phiREF2;
vpREF3X[nbLines]=rREF3; vpREF3Y[nbLines]=phiREF3;
vpUVA3X[nbLines]=rUVA3; vpUVA3Y[nbLines]=phiUVA3;
vpREF1X[nbLines]=rREF1; vpREF1Y[nbLines]=phiREF1;
nbLines++;
//if(nbLines%10000==0) cout<<nbLines<<endl;
}
fin.close();
//end of reading file
char rootfile[50]; sprintf(rootfile,"_X_%.2f_Y_%.2f_inclusive_doubleGaussian.root",preshiREF2X,preshiREF2Y);
string newhead = "./RootFiles/";
string outputrootname=newhead+residualHead+thestring+rootfile;
TFile* f = new TFile(outputrootname.c_str(),"recreate");
/*
char name2X[50];sprintf(name2X,"rREF2_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y); char name2Y[50];sprintf(name2Y,"phiREF2_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
char name3X[50];sprintf(name3X,"rREF3_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y); char name3Y[50];sprintf(name3Y,"phiREF3_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
char nameu3X[50];sprintf(nameu3X,"rUVA3_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);char nameu3Y[50];sprintf(nameu3Y,"phiUVA3_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
char name1X[50];sprintf(name1X,"rREF1_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y); char name1Y[50];sprintf(name1Y,"phiREF1_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
char nameEta5[50];sprintf(nameEta5,"phiEta5_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
hpREF2X = new TH1D(name2X,"",1500,1950,2100); hpREF2X->SetXTitle("r [mm]"); hpREF2X->SetYTitle("Frequency");hpREF2X->SetLabelSize(0.05,"XY");hpREF2X->SetTitleSize(0.05,"XY");
hpREF2Y = new TH1D(name2Y,"",200,-0.1,0.1); hpREF2Y->SetXTitle("#phi [rad]"); hpREF2Y->SetYTitle("Frequency");hpREF2Y->SetLabelSize(0.05,"XY");hpREF2Y->SetTitleSize(0.05,"XY");
hpREF3X = new TH1D(name3X,"",1500,1950,2100); hpREF3X->SetXTitle("r [mm]"); hpREF3X->SetYTitle("Frequency");hpREF3X->SetLabelSize(0.05,"XY");hpREF3X->SetTitleSize(0.05,"XY");
hpREF3Y = new TH1D(name3Y,"",200,-0.1,0.1); hpREF3Y->SetXTitle("#phi [rad]"); hpREF3Y->SetYTitle("Frequency");hpREF3Y->SetLabelSize(0.05,"XY");hpREF3Y->SetTitleSize(0.05,"XY");
hpUVA3X = new TH1D(nameu3X,"",1500,1950,2100); hpUVA3X->SetXTitle("r [mm]"); hpUVA3X->SetYTitle("Frequency");hpUVA3X->SetLabelSize(0.05,"XY");hpUVA3X->SetTitleSize(0.05,"XY");
hpUVA3Y = new TH1D(nameu3Y,"",200,-0.1,0.1); hpUVA3Y->SetXTitle("#phi [rad]"); hpUVA3Y->SetYTitle("Frequency");hpUVA3Y->SetLabelSize(0.05,"XY");hpUVA3Y->SetTitleSize(0.05,"XY");
hpREF1X = new TH1D(name1X,"",1500,1950,2100); hpREF1X->SetXTitle("r [mm]"); hpREF1X->SetYTitle("Frequency");hpREF1X->SetLabelSize(0.05,"XY");hpREF1X->SetTitleSize(0.05,"XY");
hpREF1Y = new TH1D(name1Y,"",200,-0.1,0.1); hpREF1Y->SetXTitle("#phi [rad]"); hpREF1Y->SetYTitle("Frequency");hpREF1Y->SetLabelSize(0.05,"XY");hpREF1Y->SetTitleSize(0.05,"XY");
hpEta5 = new TH1D(nameEta5,"",200,-0.1,0.1); hpEta5->SetXTitle("#phi [rad]"); hpEta5->SetYTitle("Frequency"); hpEta5->SetLabelSize(0.05,"XY");hpEta5->SetTitleSize(0.05,"XY");
*/
char nameRes2X[50];sprintf(nameRes2X,"residualREF2_r_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);char nameRes2Y[50];sprintf(nameRes2Y,"residualREF2_phi_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
char nameRes3X[50];sprintf(nameRes3X,"residualREF3_r_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);char nameRes3Y[50];sprintf(nameRes3Y,"residualREF3_phi_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
char nameResu3X[50];sprintf(nameResu3X,"residualUVA3_r_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);char nameResu3Y[50];sprintf(nameResu3Y,"residualUVA3_phi_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
char nameRes1X[50];sprintf(nameRes1X,"residualREF1_r_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);char nameRes1Y[50];sprintf(nameRes1Y,"residualREF1_phi_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
//char nameResZZ1[50];sprintf(nameResZZ1,"residualZZ1_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);char nameResZZ2[50];sprintf(nameResZZ2,"residualZZ2_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
char nameResEta5[50];sprintf(nameResEta5,"residualEta5_phi_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
residualREF2X = new TH1D(nameRes2X,"",1000,-2,2); residualREF2X->SetXTitle("Residual in r [mm]"); residualREF2X->SetYTitle("Frequency");residualREF2X->SetLabelSize(0.05,"XY");residualREF2X->SetTitleSize(0.05,"XY");
residualREF2Y = new TH1D(nameRes2Y,"",1000,-0.005,0.005); residualREF2Y->SetXTitle("Residual in #phi [rad]"); residualREF2Y->SetYTitle("Frequency");residualREF2Y->SetLabelSize(0.05,"XY");residualREF2Y->SetTitleSize(0.05,"XY");
residualREF3X = new TH1D(nameRes3X,"",1000,-2,2); residualREF3X->SetXTitle("Residual in r [mm]"); residualREF3X->SetYTitle("Frequency");residualREF3X->SetLabelSize(0.05,"XY");residualREF3X->SetTitleSize(0.05,"XY");
residualREF3Y = new TH1D(nameRes3Y,"",1000,-0.005,0.005); residualREF3Y->SetXTitle("Residual in #phi [rad]"); residualREF3Y->SetYTitle("Frequency");residualREF3Y->SetLabelSize(0.05,"XY");residualREF3Y->SetTitleSize(0.05,"XY");
residualUVA3X = new TH1D(nameResu3X,"",1000,-2,2); residualUVA3X->SetXTitle("Residual in r [mm]"); residualUVA3X->SetYTitle("Frequency");residualUVA3X->SetLabelSize(0.05,"XY");residualUVA3X->SetTitleSize(0.05,"XY");
residualUVA3Y = new TH1D(nameResu3Y,"",1000,-0.005,0.005); residualUVA3Y->SetXTitle("Residual in #phi [rad]"); residualUVA3Y->SetYTitle("Frequency");residualUVA3Y->SetLabelSize(0.05,"XY");residualUVA3Y->SetTitleSize(0.05,"XY");
residualREF1X = new TH1D(nameRes1X,"",1000,-2,2); residualREF1X->SetXTitle("Residual in r [mm]"); residualREF1X->SetYTitle("Frequency");residualREF1X->SetLabelSize(0.05,"XY");residualREF1X->SetTitleSize(0.05,"XY");
residualREF1Y = new TH1D(nameRes1Y,"",1000,-0.005,0.005); residualREF1Y->SetXTitle("Residual in #phi [rad]"); residualREF1Y->SetYTitle("Frequency");residualREF1Y->SetLabelSize(0.05,"XY");residualREF1Y->SetTitleSize(0.05,"XY");
residualEta5 = new TH1D(nameResEta5,"",1000,-0.02,0.02); residualEta5->SetXTitle("Residual in #phi [rad]"); residualEta5->SetYTitle("Frequency");residualEta5->SetLabelSize(0.05,"XY");residualEta5->SetTitleSize(0.05,"XY");
/*
char nameAngleREF3[50]; sprintf(nameAngleREF3,"angleREF3_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
char nameAngleUVA3[50]; sprintf(nameAngleUVA3,"angleUVA3_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
char nameAngleREF1[50]; sprintf(nameAngleREF1,"angleREF1_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
char nameAngleEta5[50]; sprintf(nameAngleEta5,"angleEta5_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
angleREF3 = new TH1D(nameAngleREF3,"Rotation angle distribution of REF3 and REF2",1000,-0.005,0.005); angleREF3->SetXTitle("Angle [rad]"); angleREF3->SetYTitle("Frequency");
angleUVA3 = new TH1D(nameAngleUVA3,"Rotation angle distribution of UVA3 and REF2",1000,-0.005,0.005); angleUVA3->SetXTitle("Angle [rad]"); angleUVA3->SetYTitle("Frequency");
angleREF1 = new TH1D(nameAngleREF1,"Rotation angle distribution of REF1 and REF2",1000,-0.005,0.005); angleREF1->SetXTitle("Angle [rad]"); angleREF1->SetYTitle("Frequency");
angleEta5 = new TH1D(nameAngleEta5,"Rotation Eta5 and REF2",500,-0.2,0.2);
*/
char nameChi2X[50]; sprintf(nameChi2X,"XTrackChi2_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
char nameChi2Y[50]; sprintf(nameChi2Y,"YTrackChi2_X_%.1f_Y_%.1f",preshiREF2X, preshiREF2Y);
xTrackChi2 = new TH1D(nameChi2X,"Chi square of tracks in X projection",1000,0,0.2); xTrackChi2->SetXTitle("#chi^{2} of track in r"); xTrackChi2->SetYTitle("Frequency");
xTrackChi2->SetTitleSize(0.04,"XY"); xTrackChi2->SetLabelSize(0.04,"XY");
yTrackChi2 = new TH1D(nameChi2Y,"Chi square of tracks in Y projection",1000,0,0.00002); yTrackChi2->SetXTitle("#chi^{2} of track in #phi"); yTrackChi2->SetYTitle("Frequency");
yTrackChi2->SetTitleSize(0.04,"XY"); yTrackChi2->SetLabelSize(0.04,"XY");
//fill histograms first
/*
for(Int_t i=0;i<NNNNN;i++){
hpREF2X->Fill(vpREF2X[i]); hpREF2Y->Fill(vpREF2Y[i]);
hpREF3X->Fill(vpREF3X[i]); hpREF3Y->Fill(vpREF3Y[i]);
hpUVA3X->Fill(vpUVA3X[i]); hpUVA3Y->Fill(vpUVA3Y[i]);
hpREF1X->Fill(vpREF1X[i]); hpREF1Y->Fill(vpREF1Y[i]);
hpEta5->Fill(vpEta5[i]);
angleREF3->Fill(vpREF3Y[i]-vpREF2Y[i]);
angleUVA3->Fill(vpUVA3Y[i]-vpREF2Y[i]);
angleREF1->Fill(vpREF1Y[i]-vpREF2Y[i]);
angleEta5->Fill(vpEta5[i]-vpREF2Y[i]);
}
*/
/*
I2GFvalues myValues;
myValues = I2GFmainLoop(angleREF3,1,10,1); double meanAngleREF3 = myValues.mean;
myValues = I2GFmainLoop(angleUVA3,1,10,1); double meanAngleUVA3 = myValues.mean;
myValues = I2GFmainLoop(angleREF1,1,10,1); double meanAngleREF1 = myValues.mean;
myValues = I2GFmainLoop(angleEta5,1,10,1); double meanAngleEta5 = myValues.mean;
*//*
double maximum = angleREF3->GetXaxis()->GetBinCenter(angleREF3->GetMaximumBin());
double rms = angleREF3->GetRMS(1);
double lRange = maximum - rms*2;
double hRange = maximum + rms*2;
TF1* funAngleREF3 = new TF1("funAngleREF3","gaus",lRange,hRange); angleREF3->Fit("funAngleREF3","RQ");
double meanAngleREF3=funAngleREF3->GetParameter(1);
maximum = angleUVA3->GetXaxis()->GetBinCenter(angleUVA3->GetMaximumBin());
rms = angleUVA3->GetRMS(1);
lRange = maximum - rms*2; hRange = maximum + rms*2;
TF1* funAngleUVA3 = new TF1("funAngleUVA3","gaus",lRange,hRange); angleUVA3->Fit("funAngleUVA3","RQ");
double meanAngleUVA3=funAngleUVA3->GetParameter(1);
maximum = angleREF1->GetXaxis()->GetBinCenter(angleREF1->GetMaximumBin());
rms = angleREF1->GetRMS(1);
lRange = maximum - rms*2; hRange = maximum + rms*2;
TF1* funAngleREF1 = new TF1("funAngleREF1","gaus",lRange,hRange); angleREF1->Fit("funAngleREF1","RQ");
double meanAngleREF1=funAngleREF1->GetParameter(1);
maximum = angleEta5->GetXaxis()->GetBinCenter(angleEta5->GetMaximumBin());
rms = angleEta5->GetRMS(1);
lRange = maximum - rms*2; hRange = maximum + rms*2;
TF1* funAngleEta5 = new TF1("funAngleEta5","gaus",lRange,hRange); angleEta5->Fit("funAngleEta5","RQ");
double meanAngleEta5=funAngleEta5->GetParameter(1);
delete funAngleREF3; delete funAngleUVA3; delete funAngleREF1; delete funAngleEta5;
*/
//track fitting
for(Int_t i=0;i<NNNNN;i++){
double rREF2=vpREF2X[i], phiREF2=vpREF2Y[i];
double rREF3=vpREF3X[i], phiREF3=vpREF3Y[i];//-meanAngleREF3;
double rUVA3=vpUVA3X[i], phiUVA3=vpUVA3Y[i];//-meanAngleUVA3;
double rREF1=vpREF1X[i], phiREF1=vpREF1Y[i];//-meanAngleREF1;
double phiEta5=vpEta5[i];//-meanAngleEta5;
//fill track in r direction
TGraph* g1 = new TGraph();
g1->SetPoint(0,0, rREF2);
g1->SetPoint(1,1143.5,rREF3);
g1->SetPoint(2,2686.5,rUVA3);
g1->SetPoint(3,3169.5,rREF1);
g1->GetXaxis()->SetRangeUser(-1000,3300);
TF1* f1 = new TF1("line1","pol1",0,3200);
g1->Fit("line1","Q");
double intercept1 = f1->GetParameter(0);
double slope1 = f1->GetParameter(1);
double MeasuredREF2X = intercept1 + slope1*0.0;
double MeasuredREF3X = intercept1 + slope1*1143.5;
double MeasuredUVA3X = intercept1 + slope1*2686.5;
double MeasuredREF1X = intercept1 + slope1*3169.5;
residualREF2X->Fill(MeasuredREF2X-rREF2);
residualREF3X->Fill(MeasuredREF3X-rREF3);
residualUVA3X->Fill(MeasuredUVA3X-rUVA3);
residualREF1X->Fill(MeasuredREF1X-rREF1);
xTrackChi2->Fill(f1->GetChisquare());
totalChi2 += f1->GetChisquare();
delete f1; delete g1;
//fill track in phi direction
TGraph* g2 = new TGraph();
g2->SetPoint(0,0, phiREF2);
g2->SetPoint(1,1143.5,phiREF3);
g2->SetPoint(2,2011.5,phiEta5);
g2->SetPoint(3,2686.5,phiUVA3);
g2->SetPoint(4,3169.5,phiREF1);
g2->GetXaxis()->SetRangeUser(-1000,3300);
// inclusive
//g2->SetPoint(2,2305.5,vpZZ2[i]); //inclusive 1
//g2->SetPoint(2,2327.5,vpZZ1[i]); //inclusive 2
TF1* f2 = new TF1("line2","pol1",0,3200);
g2->Fit("line2","Q");
double intercept2 = f2->GetParameter(0);
double slope2 = f2->GetParameter(1);
double MeasuredREF2Y = intercept2 + slope2*0.0;
double MeasuredREF3Y = intercept2 + slope2*1143.5;
double MeasuredUVA3Y = intercept2 + slope2*2686.5;
double MeasuredREF1Y = intercept2 + slope2*3169.5;
//double MeasuredZZ1 = intercept2 + slope2*2327.5;
//double MeasuredZZ2 = intercept2 + slope2*2305.5;
double MeasuredEta5 = intercept2 + slope2*2011.5;
residualREF2Y->Fill((MeasuredREF2Y-phiREF2));
residualREF3Y->Fill((MeasuredREF3Y-phiREF3));
residualUVA3Y->Fill((MeasuredUVA3Y-phiUVA3));
residualREF1Y->Fill((MeasuredREF1Y-phiREF1));
residualEta5->Fill((MeasuredEta5-phiEta5));
//residualZZ1->Fill(MeasuredZZ1-vpZZ1[i]);
//residualZZ2->Fill(MeasuredZZ2-vpZZ2[i]);
yTrackChi2->Fill(f2->GetChisquare());
totalChi2 += f2->GetChisquare();
delete f2; delete g2;
//nnnn++;
} //end for loop of filling histograms and fitting tracks
//cout<<"after for loop"<<endl;
//going to fit residual histograms
gStyle->SetOptFit(1111);
/*
myValues = I2GFmainLoop(residualREF2X,1,10,1); meanREF2X = myValues.mean; sigmaREF2X=myValues.sigma;
myValues = I2GFmainLoop(residualREF2Y,1,10,1); meanREF2Y = myValues.mean; sigmaREF2Y=myValues.sigma;
myValues = I2GFmainLoop(residualREF3X,1,10,1); meanREF3X = myValues.mean; sigmaREF3X=myValues.sigma;
myValues = I2GFmainLoop(residualREF3Y,1,10,1); meanREF3Y = myValues.mean; sigmaREF3Y=myValues.sigma;
myValues = I2GFmainLoop(residualUVA3X,1,10,1); meanUVA3X = myValues.mean; sigmaUVA3X=myValues.sigma;
myValues = I2GFmainLoop(residualUVA3Y,1,10,1); meanUVA3Y = myValues.mean; sigmaUVA3Y=myValues.sigma;
myValues = I2GFmainLoop(residualREF1X,1,10,1); meanREF1X = myValues.mean; sigmaREF1X=myValues.sigma;
myValues = I2GFmainLoop(residualREF1Y,1,10,1); meanREF1Y = myValues.mean; sigmaREF1Y=myValues.sigma;
*/
I2GFvalues myValues;
myValues = I2GFmainLoop(residualEta5,1,10,1);
meanEta5 = myValues.mean; sigmaEta5=myValues.sigma;
/*
maximum = residualEta5->GetXaxis()->GetBinCenter(residualEta5->GetMaximumBin());
rms = residualEta5->GetRMS(1);
lRange = maximum - rms*1.5; hRange = maximum + rms*1.5;
TF1* funResidualEta5 = new TF1("funResidualEta5","gaus",lRange,hRange); residualEta5->Fit("funResidualEta5","RQ");
meanEta5=funResidualEta5->GetParameter(1);
sigmaEta5=funResidualEta5->GetParameter(2);
delete funResidualEta5;
*/
meanXChi2=xTrackChi2->GetMean();
meanYChi2=yTrackChi2->GetMean();
f->Write();
f->Close();
fout1<<preshiREF2X<<"\t"<<preshiREF2Y<<"\t"<<meanEta5<<"\t"<<sigmaEta5<<"\t"<<meanXChi2<<"\t"<<meanYChi2<<"\t"<<totalChi2<<endl;
//fout3<<preshiREF2X<<"\t"<<preshiREF2Y<<"\t"<<sigmaREF2X<<"\t"<<sigmaREF2Y<<"\t"<<sigmaREF3X<<"\t"<<sigmaREF3Y<<"\t"<<sigmaUVA3X<<"\t"<<sigmaUVA3Y<<"\t"<<sigmaREF1X<<"\t"<<sigmaREF1Y<<"\t"<<sigmaEta5<<endl;
//fout2<<preshiREF2X<<"\t"<<preshiREF2Y<<"\t"<<meanXChi2<<"\t"<<meanYChi2<<endl;
//clear the vectors for next loop
//vpREF2X.clear(); vpREF2Y.clear();
//vpREF3X.clear(); vpREF3Y.clear();
//vpUVA3X.clear(); vpUVA3Y.clear();
//vpREF1X.clear(); vpREF1Y.clear();
//vpEta5.clear();
//vpREF2X.swap(DefaultVector); vpREF2Y.swap(DefaultVector); vpREF3X.swap(DefaultVector); vpREF3Y.swap(DefaultVector);
//vpUVA3X.swap(DefaultVector); vpUVA3Y.swap(DefaultVector); vpREF1X.swap(DefaultVector); vpREF1Y.swap(DefaultVector); vpEta5.swap(DefaultVector);
// cout<<residualEta5->GetEntries()<<"TTTTTTTTTTTT"<<endl;
//gDirectory->GetList()->Delete();
//hpREF2X=NULL; hpREF2Y=NULL; hpREF3X=NULL; hpREF3Y=NULL;
//hpUVA3X=NULL; hpUVA3Y=NULL; hpREF1X=NULL; hpREF1Y=NULL;
//residualREF2X=NULL; residualREF2Y=NULL; residualREF3X=NULL; residualREF3Y=NULL;
//residualUVA3X=NULL; residualUVA3Y=NULL; residualREF1X=NULL; residualREF1Y=NULL;
//residualEta5=NULL;
//funResidualEta5=NULL;
//angleREF3=NULL; angleUVA3=NULL; angleREF1=NULL; angleEta5=NULL;
//myValues.fit_func=NULL;
// delete myValues.fit_func;
// f=NULL; delete f;
//}//for-loop instead of while(1)
// delete hpREF2X; delete hpREF2Y; delete hpREF3X; delete hpREF3Y;
// delete hpUVA3X; delete hpUVA3Y; delete hpREF1X; delete hpREF1Y;
// delete residualREF2X; delete residualREF2Y; delete residualREF3X; delete residualREF3Y;
// delete residualUVA3X; delete residualUVA3Y; delete residualREF1X; delete residualREF1Y;
// delete residualEta5;
//delete funResidualEta5;
// delete angleREF3; delete angleUVA3; delete angleREF1;
// delete angleEta5;
//}
fout1.close();
//fout3.close();
//fout2.close();
return 0;
} // entire script
int main(int argc, char **argv)
{
const bool release(argc >= 2 && std::string(argv[1]) == "--release");
// Get files..
std::vector<std::string> libfiles;
getCppFiles(libfiles, "lib/");
std::vector<std::string> clifiles;
getCppFiles(clifiles, "cli/");
std::vector<std::string> testfiles;
getCppFiles(testfiles, "test/");
if (libfiles.empty() && clifiles.empty() && testfiles.empty()) {
std::cerr << "No files found. Are you in the correct directory?" << std::endl;
return EXIT_FAILURE;
}
std::vector<std::string> externalfiles;
getCppFiles(externalfiles, "externals/");
// QMAKE - lib/lib.pri
{
std::ofstream fout1("lib/lib.pri");
if (fout1.is_open()) {
fout1 << "# no manual edits - this file is autogenerated by dmake\n\n";
fout1 << "include($$PWD/pcrerules.pri)\n";
fout1 << "BASEPATH = ../externals/tinyxml/\n";
fout1 << "include($$PWD/../externals/tinyxml/tinyxml.pri)\n";
fout1 << "BASEPATH = ../lib/\n";
fout1 << "INCLUDEPATH += ../externals/tinyxml\n";
fout1 << "HEADERS += $${BASEPATH}check.h \\\n";
for (unsigned int i = 0; i < libfiles.size(); ++i) {
std::string fname(libfiles[i].substr(4));
if (fname.find(".cpp") == std::string::npos)
continue; // shouldn't happen
fname.erase(fname.find(".cpp"));
fout1 << std::string(11, ' ') << "$${BASEPATH}" << fname << ".h";
if (i + 1 < testfiles.size())
fout1 << " \\\n";
}
fout1 << "\n\nSOURCES += ";
for (unsigned int i = 0; i < libfiles.size(); ++i) {
fout1 << "$${BASEPATH}" << libfiles[i].substr(4);
if (i < libfiles.size() - 1)
fout1 << " \\\n" << std::string(11, ' ');
}
fout1 << "\n";
}
}
// QMAKE - test/testfiles.pri
{
std::ofstream fout1("test/testfiles.pri");
if (fout1.is_open()) {
fout1 << "# no manual edits - this file is autogenerated by dmake\n\n";
fout1 << "INCLUDEPATH += ../externals/tinyxml\n";
fout1 << "\n\nSOURCES += ";
for (unsigned int i = 0; i < testfiles.size(); ++i) {
const std::string filename(testfiles[i].substr(5));
// Include only files containing tests in this listing.
// I.e. filenames beginning with "test".
if (filename.compare(0, 4, "test") == 0) {
fout1 << "$${BASEPATH}/" << filename;
if (i + 1 < testfiles.size())
fout1 << " \\\n" << std::string(11, ' ');
}
}
fout1 << "\n";
}
}
static const char makefile[] = "Makefile";
std::ofstream fout(makefile, std::ios_base::trunc);
if (!fout.is_open()) {
std::cerr << "An error occurred while trying to open "
<< makefile
<< ".\n";
return EXIT_FAILURE;
}
fout << "# This file is generated by tools/dmake, do not edit.\n\n";
fout << "# To compile with rules, use 'make HAVE_RULES=yes'\n";
makeConditionalVariable(fout, "HAVE_RULES", "no");
// compiled patterns..
fout << "# folder where lib/*.cpp files are located\n";
makeConditionalVariable(fout, "SRCDIR", "lib");
fout << "ifeq ($(SRCDIR),build)\n"
<< " ifdef VERIFY\n"
<< " matchcompiler_S := $(shell python tools/matchcompiler.py --verify)\n"
<< " else\n"
<< " matchcompiler_S := $(shell python tools/matchcompiler.py)\n"
<< " endif\n"
<< "endif\n\n";
// explicit cfg dir..
fout << "ifdef CFGDIR\n"
<< " CFG=-DCFGDIR=\\\"$(CFGDIR)\\\"\n"
<< "else\n"
<< " CFG=\n"
<< "endif\n\n";
// The _GLIBCXX_DEBUG doesn't work in cygwin or other Win32 systems.
fout << "# Set the CPPCHK_GLIBCXX_DEBUG flag. This flag is not used in release Makefiles.\n"
<< "# The _GLIBCXX_DEBUG define doesn't work in Cygwin or other Win32 systems.\n"
<< "ifndef COMSPEC\n"
<< " ifdef ComSpec\n"
<< " #### ComSpec is defined on some WIN32's.\n"
<< " COMSPEC=$(ComSpec)\n"
<< " endif # ComSpec\n"
<< "endif # COMSPEC\n"
<< "\n"
<< "ifdef COMSPEC\n"
<< " #### Maybe Windows\n"
<< " ifndef CPPCHK_GLIBCXX_DEBUG\n"
<< " CPPCHK_GLIBCXX_DEBUG=\n"
<< " endif # !CPPCHK_GLIBCXX_DEBUG\n"
<< "\n"
<< " ifeq ($(MSYSTEM),MINGW32)\n"
<< " LDFLAGS=-lshlwapi\n"
<< " endif\n"
<< "else # !COMSPEC\n"
<< " uname_S := $(shell sh -c 'uname -s 2>/dev/null || echo not')\n"
<< "\n"
<< " ifeq ($(uname_S),Linux)\n"
<< " ifndef CPPCHK_GLIBCXX_DEBUG\n"
<< " CPPCHK_GLIBCXX_DEBUG=-D_GLIBCXX_DEBUG\n"
<< " endif # !CPPCHK_GLIBCXX_DEBUG\n"
<< " endif # Linux\n"
<< "\n"
<< " ifeq ($(uname_S),GNU/kFreeBSD)\n"
<< " ifndef CPPCHK_GLIBCXX_DEBUG\n"
<< " CPPCHK_GLIBCXX_DEBUG=-D_GLIBCXX_DEBUG\n"
<< " endif # !CPPCHK_GLIBCXX_DEBUG\n"
<< " endif # GNU/kFreeBSD\n"
<< "\n"
<< "endif # COMSPEC\n"
<< "\n";
// Makefile settings..
if (release) {
makeConditionalVariable(fout, "CXXFLAGS", "-O2 -DNDEBUG -Wall");
} else {
// TODO: add more compiler warnings.
// -Wlogical-op : doesn't work on older GCC
// -Wsign-conversion : too many warnings
// -Wunreachable-code : some GCC versions report lots of warnings
makeConditionalVariable(fout, "CXXFLAGS",
"-pedantic "
"-Wall "
"-Wextra "
"-Wabi "
"-Wcast-qual "
"-Wconversion "
"-Wfloat-equal "
"-Winline "
// "-Wlogical-op "
"-Wmissing-declarations "
"-Wmissing-format-attribute "
"-Wno-long-long "
"-Woverloaded-virtual "
"-Wpacked "
"-Wredundant-decls "
"-Wshadow "
// "-Wsign-conversion "
"-Wsign-promo "
// "-Wunreachable-code "
"$(CPPCHK_GLIBCXX_DEBUG) "
"-g");
}
fout << "ifeq ($(HAVE_RULES),yes)\n"
<< " CXXFLAGS += -DHAVE_RULES -DTIXML_USE_STL $(shell pcre-config --cflags)\n"
<< " ifdef LIBS\n"
<< " LIBS += $(shell pcre-config --libs)\n"
<< " else\n"
<< " LIBS=$(shell pcre-config --libs)\n"
<< " endif\n"
<< "endif\n\n";
makeConditionalVariable(fout, "CXX", "g++");
makeConditionalVariable(fout, "PREFIX", "/usr");
makeConditionalVariable(fout, "INCLUDE_FOR_LIB", "-Ilib -Iexternals -Iexternals/tinyxml");
makeConditionalVariable(fout, "INCLUDE_FOR_CLI", "-Ilib -Iexternals -Iexternals/tinyxml");
makeConditionalVariable(fout, "INCLUDE_FOR_TEST", "-Ilib -Icli -Iexternals -Iexternals/tinyxml");
fout << "BIN=$(DESTDIR)$(PREFIX)/bin\n\n";
fout << "# For 'make man': sudo apt-get install xsltproc docbook-xsl docbook-xml on Linux\n";
fout << "DB2MAN=/usr/share/sgml/docbook/stylesheet/xsl/nwalsh/manpages/docbook.xsl\n";
fout << "XP=xsltproc -''-nonet -''-param man.charmap.use.subset \"0\"\n";
fout << "MAN_SOURCE=man/cppcheck.1.xml\n\n";
fout << "\n###### Object Files\n\n";
fout << "LIBOBJ = " << objfile(libfiles[0]);
for (unsigned int i = 1; i < libfiles.size(); ++i)
fout << " \\\n" << std::string(14, ' ') << objfile(libfiles[i]);
fout << "\n\n";
fout << "CLIOBJ = " << objfile(clifiles[0]);
for (unsigned int i = 1; i < clifiles.size(); ++i)
fout << " \\\n" << std::string(14, ' ') << objfile(clifiles[i]);
fout << "\n\n";
fout << "TESTOBJ = " << objfile(testfiles[0]);
for (unsigned int i = 1; i < testfiles.size(); ++i)
fout << " \\\n" << std::string(14, ' ') << objfile(testfiles[i]);
fout << "\n\n";
makeExtObj(fout, externalfiles);
fout << "\n###### Targets\n\n";
fout << "cppcheck: $(LIBOBJ) $(CLIOBJ) $(EXTOBJ)\n";
fout << "\t$(CXX) $(CPPFLAGS) $(CXXFLAGS) -std=c++0x -o cppcheck $(CLIOBJ) $(LIBOBJ) $(EXTOBJ) $(LIBS) $(LDFLAGS)\n\n";
fout << "all:\tcppcheck testrunner\n\n";
fout << "testrunner: $(TESTOBJ) $(LIBOBJ) $(EXTOBJ) cli/threadexecutor.o cli/cmdlineparser.o cli/cppcheckexecutor.o cli/filelister.o cli/pathmatch.o\n";
fout << "\t$(CXX) $(CPPFLAGS) $(CXXFLAGS) -std=c++0x -o testrunner $(TESTOBJ) $(LIBOBJ) cli/threadexecutor.o cli/cppcheckexecutor.o cli/cmdlineparser.o cli/filelister.o cli/pathmatch.o $(EXTOBJ) $(LIBS) $(LDFLAGS)\n\n";
fout << "test:\tall\n";
fout << "\t./testrunner\n\n";
fout << "check:\tall\n";
fout << "\t./testrunner -g -q\n\n";
fout << "dmake:\ttools/dmake.cpp\n";
fout << "\t$(CXX) -std=c++0x -o dmake tools/dmake.cpp cli/filelister.cpp lib/path.cpp -Ilib $(LDFLAGS)\n\n";
fout << "reduce:\ttools/reduce.cpp\n";
fout << "\t$(CXX) -std=c++0x -g -o reduce tools/reduce.cpp -Ilib -Iexternals/tinyxml lib/*.cpp externals/tinyxml/tinyxml2.cpp\n\n";
fout << "clean:\n";
fout << "\trm -f build/*.o lib/*.o cli/*.o test/*.o externals/tinyxml/*.o testrunner reduce cppcheck cppcheck.1\n\n";
fout << "man:\tman/cppcheck.1\n\n";
fout << "man/cppcheck.1:\t$(MAN_SOURCE)\n\n";
fout << "\t$(XP) $(DB2MAN) $(MAN_SOURCE)\n\n";
fout << "tags:\n";
fout << "\tctags -R --exclude=doxyoutput .\n\n";
fout << "install: cppcheck\n";
fout << "\tinstall -d ${BIN}\n";
fout << "\tinstall cppcheck ${BIN}\n";
fout << "\tinstall htmlreport/cppcheck-htmlreport ${BIN}\n\n";
fout << "\n###### Build\n\n";
compilefiles(fout, libfiles, "${INCLUDE_FOR_LIB}");
compilefiles(fout, clifiles, "${INCLUDE_FOR_CLI}");
compilefiles(fout, testfiles, "${INCLUDE_FOR_TEST}");
return 0;
}
int main( int argc , char *argv[] )
{
rng_type rng;
trainings_data_type c = gpcxx::generate_evenly_spaced_test_data< 3 >( -5.0 , 5.0 + 0.1 , 0.4 , []( double x1 , double x2 , double x3 ) {
return 1.0 / ( 1.0 + pow( x1 , -4.0 ) ) + 1.0 / ( 1.0 + pow( x2 , -4.0 ) ) + 1.0 / ( 1.0 + pow( x3 , -4.0 ) ); } );
gpcxx::normalize( c.y );
std::ofstream fout1( "testdata.dat" );
for( size_t i=0 ; i<c.x[0].size() ; ++i )
fout1 << c.y[i] << " " << c.x[0][i] << " " << c.x[1][i] << " " << c.x[2][i] << "\n";
fout1.close();
auto eval = gpcxx::make_static_eval< value_type , symbol_type , eval_context_type >(
fusion::make_vector(
fusion::make_vector( 'x' , []( eval_context_type const& t ) { return t[0]; } )
, fusion::make_vector( 'y' , []( eval_context_type const& t ) { return t[1]; } )
, fusion::make_vector( 'z' , []( eval_context_type const& t ) { return t[2]; } )
) ,
fusion::make_vector(
fusion::make_vector( 's' , []( double v ) -> double { return std::sin( v ); } )
, fusion::make_vector( 'c' , []( double v ) -> double { return std::cos( v ); } )
, fusion::make_vector( 'e' , []( double v ) -> double { return std::exp( v ); } )
, fusion::make_vector( 'l' , []( double v ) -> double { return ( std::abs( v ) < 1.0e-20 ) ? log( 1.0e-20 ) : std::log( std::abs( v ) ); } )
) ,
fusion::make_vector(
fusion::make_vector( '+' , std::plus< double >() )
, fusion::make_vector( '-' , std::minus< double >() )
, fusion::make_vector( '*' , std::multiplies< double >() )
, fusion::make_vector( '/' , std::divides< double >() )
) );
typedef decltype( eval ) eval_type;
typedef eval_type::node_attribute_type node_attribute_type;
typedef gpcxx::basic_tree< node_attribute_type > tree_type;
typedef std::vector< tree_type > population_type;
typedef gpcxx::static_pipeline< population_type , fitness_type , rng_type > evolver_type;
size_t population_size = 1000;
size_t generation_size = 20;
double number_elite = 1;
double mutation_rate = 0.0;
double crossover_rate = 0.6;
double reproduction_rate = 0.3;
size_t min_tree_height = 8 , max_tree_height = 8;
size_t tournament_size = 15;
// generators< rng_type > gen( rng );
auto terminal_gen = eval.get_terminal_symbol_distribution();
auto unary_gen = eval.get_unary_symbol_distribution();
auto binary_gen = eval.get_binary_symbol_distribution();
gpcxx::node_generator< node_attribute_type , rng_type , 3 > node_generator {
{ 2.0 * double( terminal_gen.num_symbols() ) , 0 , terminal_gen } ,
{ double( unary_gen.num_symbols() ) , 1 , unary_gen } ,
{ double( binary_gen.num_symbols() ) , 2 , binary_gen } };
auto tree_generator = gpcxx::make_ramp( rng , node_generator , min_tree_height , max_tree_height , 0.5 );
evolver_type evolver( number_elite , mutation_rate , crossover_rate , reproduction_rate , rng );
std::vector< double > fitness( population_size , 0.0 );
std::vector< tree_type > population( population_size );
auto fitness_f = gpcxx::regression_fitness< eval_type >( eval );
evolver.mutation_function() = gpcxx::make_mutation(
gpcxx::make_simple_mutation_strategy( rng , node_generator ) ,
gpcxx::make_tournament_selector( rng , tournament_size ) );
evolver.crossover_function() = gpcxx::make_crossover(
gpcxx::make_one_point_crossover_strategy( rng , max_tree_height ) ,
gpcxx::make_tournament_selector( rng , tournament_size ) );
evolver.reproduction_function() = gpcxx::make_reproduce( gpcxx::make_tournament_selector( rng , tournament_size ) );
gpcxx::timer timer;
// initialize population with random trees and evaluate fitness
timer.restart();
for( size_t i=0 ; i<population.size() ; ++i )
{
tree_generator( population[i] );
fitness[i] = fitness_f( population[i] , c );
}
std::cout << gpcxx::indent( 0 ) << "Generation time " << timer.seconds() << std::endl;
std::cout << gpcxx::indent( 1 ) << "Best individuals" << std::endl << gpcxx::best_individuals( population , fitness , 1 , 10 ) << std::endl;
std::cout << gpcxx::indent( 1 ) << "Statistics : " << gpcxx::calc_population_statistics( population ) << std::endl;
std::cout << gpcxx::indent( 1 ) << std::endl << std::endl;
timer.restart();
for( size_t generation=1 ; generation<=generation_size ; ++generation )
{
gpcxx::timer iteration_timer;
iteration_timer.restart();
evolver.next_generation( population , fitness );
double evolve_time = iteration_timer.seconds();
iteration_timer.restart();
std::transform( population.begin() , population.end() , fitness.begin() , [&]( tree_type const &t ) { return fitness_f( t , c ); } );
double eval_time = iteration_timer.seconds();
std::cout << gpcxx::indent( 0 ) << "Generation " << generation << std::endl;
std::cout << gpcxx::indent( 1 ) << "Evolve time " << evolve_time << std::endl;
std::cout << gpcxx::indent( 1 ) << "Eval time " << eval_time << std::endl;
std::cout << gpcxx::indent( 1 ) << "Best individuals" << std::endl << gpcxx::best_individuals( population , fitness , 2 , 10 ) << std::endl;
std::cout << gpcxx::indent( 1 ) << "Statistics : " << gpcxx::calc_population_statistics( population ) << std::endl << std::endl;
}
std::cout << "Overall time : " << timer.seconds() << std::endl;
return 0;
}
void plot0v2new(){
gStyle->SetOptStat(0);
gStyle->SetOptFit(1);
gStyle->SetOptTitle(0);
gStyle->SetCanvasBorderMode(0);
gStyle->SetStatColor(10);
gStyle->SetTitleFillColor(10);
const int nrun=339;
// ifstream fin1("fvtx0s_v2_cent_0.dat");
ifstream fin1("bbcs_v2_cent_0.dat");
// ifstream fin2("../../final06/rp/fvtx0s_v2_cent_0.dat");
ifstream fin2("../Run15pAu200GeVlowRun1.Lst");
int runlow[92];
ofstream fout1("goodrun_lowlumi.dat");
// ofstream fout1("goodrun_bbcs_v2_cent_0.dat");
// ofstream fout2("goodrun_fvtx1s_v2_cent_0.dat");
float run[nrun];
float par1[nrun], par2[nrun], par3[nrun], par4[nrun];
for(int irun=0;irun<92;irun++)
fin2>>runlow[irun];
for(int irun=0; irun<nrun; irun++){
fin1>>run[irun]>>par1[irun];
// fin2>>run[irun]>>par2[irun];
// if(par1[irun]>0.2&&par1[irun]<3.0){
int flag=0;
for(int j=0;j<92;j++){
if(run[irun]==runlow[j])
flag=1;
}
if(flag==1)
fout1<<run[irun]<<endl;
// }
// else
cout<<"bbc"<<run[irun]<<endl;
// if(par2[irun]>0.2&&par2[irun]<3.0) fout2<<run[irun]<<endl;
// else cout<<"mpc"<<run[irun]<<endl;
}
fin1.close();
// fin2.close();
fout1.close();
// fout2.close();
//cnt
//for(int irun=0; irun<nrun; irun++){
//fin4>>run[irun]>>par4[irun];
//if(par4[irun]>0.2&&par4[irun]<5.0) fout4<<run[irun]<<endl;
//}
//fin4.close();
//fout4.close();
TGraph *gr1 = new TGraph(nrun,run,par1);
// TGraph *gr2 = new TGraph(nrun,run,par2);
c=new TCanvas("c","c",800,500);
c->SetFillColor(10);
// TH1F *h=new TH1F("h","RP QA for FVTXs Psi2",436017-432637+20,432637-10,436017+10);
TH1F *h=new TH1F("h","RP QA for bbcs Psi2",436017-432637+20,432637-10,436017+10);
h->SetMaximum(2.0);
h->SetMinimum(-1.0);
h->GetXaxis()->SetTitle("#run");
h->GetYaxis()->SetTitle("#chi^{2}/NDF");
h->GetYaxis()->CenterTitle(kTRUE);
h->Draw();
gr1->SetMarkerStyle(20);
gr1->SetMarkerSize(1.0);
gr1->SetMarkerColor(2);
gr1->Draw("P");
/*
gr2->SetMarkerStyle(22);
gr2->SetMarkerSize(1.0);
gr2->SetMarkerColor(6);
gr2->Draw("P");
*/
TLegend *leg2 = new TLegend(0.62,0.87,0.85,0.67);
leg2->SetFillColor(10);
leg2->SetLineStyle(4000);
leg2->SetLineColor(10);
leg2->SetLineWidth(0.);
leg2->SetTextSize(0.04);
leg2->SetBorderSize(0);
// leg2->AddEntry(gr1,"Psi2 FVTXs:0~5%","");
leg2->AddEntry(gr1,"Psi2 BBCs:0~5%","");
// leg2->AddEntry(gr2,"eta:-2.5,-1.5","P");
leg2->AddEntry(gr1,"eta:-3.0,-1.0","P");
//leg2->AddEntry(gr3,"SMDs","P");
//leg2->AddEntry(gr4,"CNT","P");
leg2->Draw();
//c->Print("ReactionPlane_cent0_10.eps");
//c->Print("ReactionPlane_cent0_10.gif");
}
int main()
{
std::ofstream fout1("test1.dat"); // Flat Sky
std::ofstream fout2("test2.dat"); // Spherical near equator
std::ofstream fout3("test3.dat"); // Spherical around N pole.
std::ofstream fout4("test4.dat"); // Test1 with random offsets
std::ofstream fout4c("test4_centers.dat"); // Corresponding centers for test4.dat
fout1.precision(12);
fout2.precision(12);
fout3.precision(12);
fout4.precision(12);
fout4c.precision(12);
double ra0 = 0.; // RA, Dec of center for test2.
double dec0 = 80.;
const long ngal = 100000;
const double rscale = 1.; // Scale radius in degrees.
const double rmax = 5.; // In units of rscale
// The functional form imprinted is purely radial:
// gamma_t(r) = gamma0/r
// kappa(r) = kappa0/r
// n(r) ~ exp(-r^2/2)
// where r is in units of rscale
const double gamma0 = 1.e-3;
const double kappa0 = 3.e-3;
// Make sure gamma_t < 0.5
const double rmin = gamma0/0.5;
srand(1234); // To make it deterministic.
// Normally for the Box-Muller Transformation, one would restrict rsq < 1
// But we then want to clip the resulting distribution at rmax, so
// rsq * fac^2 < rmax^2
// rsq * (-2.*log(rsq)/rsq) < rmax^2
// -2. * log(rsq) < rmax^2
// rsq > exp(-rmax^2/2)
const double rsqmin = exp(-rmax*rmax/2.);
const double rsqmax = exp(-rmin*rmin/2.);
//std::cout<<"rsq min/max = "<<rsqmin<<','<<rsqmax<<std::endl;
double xdeg_min=0., xdeg_max=0., var_xdeg=0.;
double ydeg_min=0., ydeg_max=0., var_ydeg=0.;
for (long n=0; n<ngal; ++n) {
double x,y,rsq;
do {
x = double(rand()) / RAND_MAX; // Random number from 0..1
y = double(rand()) / RAND_MAX;
//std::cout<<"x,y = "<<x<<','<<y<<std::endl;
x = 2.*x-1.; // Now from -1..1
y = 2.*y-1.;
//std::cout<<"x,y => "<<x<<','<<y<<std::endl;
rsq = x*x+y*y;
//std::cout<<"rsq = "<<rsq<<std::endl;
} while (rsq <= rsqmin || rsq >= rsqmax);
// Use Box-Muller Transformation to convert to Gaussian distribution in x,y.
double fac = sqrt(-2.*log(rsq)/rsq);
x *= fac;
y *= fac;
double r = fac*sqrt(rsq);
double theta = atan2(y,x);
double g = gamma0 / r;
double k = kappa0 / r;
assert(g < 0.5);
double xdeg = x*rscale;
double ydeg = y*rscale;
double rdeg = r*rscale;
// Do some sanity checks:
if (xdeg < xdeg_min) xdeg_min = xdeg;
if (xdeg > xdeg_max) xdeg_max = xdeg;
if (ydeg < ydeg_min) ydeg_min = ydeg;
if (ydeg > ydeg_max) ydeg_max = ydeg;
var_xdeg += xdeg*xdeg;
var_ydeg += ydeg*ydeg;
//
// Flat sky:
//
double g1 = -g * cos(2.*theta);
double g2 = -g * sin(2.*theta);
fout1 << xdeg <<" "<< ydeg <<" "<< g1 <<" "<< g2 <<" "<< k <<std::endl;
// With offsets in position:
double dx = 2.*double(rand()) / RAND_MAX - 1.; // Random number from -1..1
double dy = 2.*double(rand()) / RAND_MAX - 1.;
dx *= rscale;
dy *= rscale;
fout4 << xdeg + dx <<" "<< ydeg + dy <<" "<< g1 <<" "<< g2 <<" "<< k <<std::endl;
fout4c << dx <<" "<< dy <<" 1. "<<std::endl;
//
// Spherical near equator:
//
// Use spherical triangle with A = point, B = (ra0,dec0), C = N. pole
// a = Pi/2-dec0
// c = 2*atan(r/2)
// B = Pi/2 - theta
// Solve the rest of the triangle with spherical trig:
double c = 2.*atan( (rdeg*M_PI/180.) / 2.);
double a = M_PI/2. - (dec0*M_PI/180.);
double B = x > 0 ? M_PI/2. - theta : theta - M_PI/2.;
if (B < 0) B += 2.*M_PI;
if (B > 2.*M_PI) B -= 2.*M_PI;
double cosb = cos(a)*cos(c) + sin(a)*sin(c)*cos(B);
double b = std::abs(cosb) < 1. ? acos(cosb) : 0.;
double cosA = (cos(a) - cos(b)*cos(c)) / (sin(b)*sin(c));
double A = std::abs(cosA) < 1. ? acos(cosA) : 0.;
double cosC = (cos(c) - cos(a)*cos(b)) / (sin(a)*sin(b));
double C = std::abs(cosC) < 1. ? acos(cosC) : 0.;
//std::cout<<"x,y = "<<x<<','<<y<<std::endl;
//std::cout<<"a = "<<a<<std::endl;
//std::cout<<"b = "<<b<<std::endl;
//std::cout<<"c = "<<c<<std::endl;
//std::cout<<"A = "<<A<<std::endl;
//std::cout<<"B = "<<B<<std::endl;
//std::cout<<"C = "<<C<<std::endl;
// Compute ra,dec from these.
// Note: increasing x is decreasing ra. East is left on the sky!
double ra = x>0 ? -C : C;
double dec = M_PI/2. - b;
ra *= 180. / M_PI;
dec *= 180. / M_PI;
ra += ra0;
//std::cout<<"ra = "<<ra<<std::endl;
//std::cout<<"dec = "<<dec<<std::endl;
// Rotate shear relative to local west
std::complex<double> gamma(g1,g2);
double beta = M_PI - (A+B);
if (x > 0) beta = -beta;
//std::cout<<"gamma = "<<gamma<<std::endl;
//std::cout<<"beta = "<<beta<<std::endl;
std::complex<double> exp2ibeta(cos(2.*beta),sin(2.*beta));
gamma *= exp2ibeta;
//std::cout<<"gamma => "<<gamma<<std::endl;
fout2 << ra <<" "<< dec <<" "<< real(gamma) <<" "<<imag(gamma) <<" "<<k <<std::endl;
//
// Spherical around N pole
//
dec = 90. - c * 180./M_PI;
ra = theta * 12. / M_PI;
fout3 << ra <<" "<< dec <<" "<< g <<" "<<0. <<" "<<k <<std::endl;
}
var_xdeg /= ngal;
var_ydeg /= ngal;
std::cout<<"Min/Max x = "<<xdeg_min<<" "<<xdeg_max<<std::endl;;
std::cout<<"Min/Max y = "<<ydeg_min<<" "<<ydeg_max<<std::endl;;
std::cout<<"sqrt(Var(x)) = "<<sqrt(var_xdeg)<<std::endl;
std::cout<<"sqrt(Var(y)) = "<<sqrt(var_ydeg)<<std::endl;
// Make random catalogs
std::ofstream foutr1("rand1.dat");
std::ofstream foutr2("rand2.dat");
std::ofstream foutr3("rand3.dat");
foutr1.precision(12);
foutr2.precision(12);
foutr3.precision(12);
xdeg_min=xdeg_max=var_xdeg=0.;
ydeg_min=ydeg_max=var_ydeg=0.;
for (long n=0; n<10*ngal; ++n) {
double x,y,rsq;
do {
x = double(rand()) / RAND_MAX; // Random number from 0..1
y = double(rand()) / RAND_MAX;
x = 2.*x-1.; // Now from -1..1
y = 2.*y-1.;
rsq = x*x+y*y;
} while (rsq >= 1.);
x *= rmax;
y *= rmax;
double r = rmax*sqrt(rsq);
double theta = atan2(y,x);
double xdeg = x*rscale;
double ydeg = y*rscale;
double rdeg = r*rscale;
// Do some sanity checks:
if (xdeg < xdeg_min) xdeg_min = xdeg;
if (xdeg > xdeg_max) xdeg_max = xdeg;
if (ydeg < ydeg_min) ydeg_min = ydeg;
if (ydeg > ydeg_max) ydeg_max = ydeg;
var_xdeg += xdeg*xdeg;
var_ydeg += ydeg*ydeg;
//
// flat sky:
//
foutr1 << xdeg <<" "<< ydeg << std::endl;
//
// Spherical near equator:
//
double c = 2.*atan( (rdeg*M_PI/180.) / 2.);
double a = M_PI/2. - (dec0*M_PI/180.);
double B = x > 0 ? M_PI/2. - theta : theta - M_PI/2.;
if (B < 0) B += 2.*M_PI;
if (B > 2.*M_PI) B -= 2.*M_PI;
double cosb = cos(a)*cos(c) + sin(a)*sin(c)*cos(B);
double b = std::abs(cosb) < 1. ? acos(cosb) : 0.;
double cosC = (cos(c) - cos(a)*cos(b)) / (sin(a)*sin(b));
double C = std::abs(cosC) < 1. ? acos(cosC) : 0.;
double ra = x>0 ? -C : C;
double dec = M_PI/2. - b;
ra *= 180. / M_PI;
dec *= 180. / M_PI;
ra += ra0;
foutr2 << ra <<" "<< dec <<std::endl;
//
// Spherical around N pole
//
dec = 90. - c * 180./M_PI;
ra = theta * 12. / M_PI;
foutr3 << ra <<" "<< dec <<std::endl;
}
var_xdeg /= ngal;
var_ydeg /= ngal;
std::cout<<"For randoms:\n";
std::cout<<"Min/Max x = "<<xdeg_min<<" "<<xdeg_max<<std::endl;;
std::cout<<"Min/Max y = "<<ydeg_min<<" "<<ydeg_max<<std::endl;;
std::cout<<"sqrt(Var(x)) = "<<sqrt(var_xdeg)<<std::endl;
std::cout<<"sqrt(Var(y)) = "<<sqrt(var_ydeg)<<std::endl;
return 0;
}
int main( int argc , char *argv[] )
{
rng_type rng;
trainings_data_type c;
generate_test_data( c , -5.0 , 5.0 + 0.1 , 0.4 , []( double x1 , double x2 , double x3 ) {
return 1.0 / ( 1.0 + pow( x1 , -4.0 ) ) + 1.0 / ( 1.0 + pow( x2 , -4.0 ) ) + 1.0 / ( 1.0 + pow( x3 , -4.0 ) ); } );
gpcxx::normalize( c.y );
std::ofstream fout1( "testdata.dat" );
for( size_t i=0 ; i<c.x[0].size() ; ++i )
fout1 << c.y[i] << " " << c.x[0][i] << " " << c.x[1][i] << " " << c.x[2][i] << "\n";
fout1.close();
gpcxx::uniform_symbol< node_type > terminal_gen { std::vector< node_type >{
node_type { gpcxx::array_terminal< 0 >{} , "x" } ,
node_type { gpcxx::array_terminal< 1 >{} , "y" } ,
node_type { gpcxx::array_terminal< 2 >{} , "z" } } };
gpcxx::uniform_symbol< node_type > unary_gen { std::vector< node_type >{
node_type { gpcxx::sin_func{} , "s" } ,
node_type { gpcxx::cos_func{} , "c" } ,
node_type { gpcxx::exp_func{} , "e" } ,
node_type { gpcxx::log_func{} , "l" } } };
gpcxx::uniform_symbol< node_type > binary_gen { std::vector< node_type > {
node_type { gpcxx::plus_func{} , "+" } ,
node_type { gpcxx::minus_func{} , "-" } ,
node_type { gpcxx::multiplies_func{} , "*" } ,
node_type { gpcxx::divides_func{} , "/" }
} };
gpcxx::node_generator< node_type , rng_type , 3 > node_generator {
{ double ( terminal_gen.num_symbols() ) , 0 , terminal_gen } ,
{ double ( unary_gen.num_symbols() ) , 1 , unary_gen } ,
{ double ( binary_gen.num_symbols() ) , 2 , binary_gen } };
size_t population_size = 512;
size_t generation_size = 20;
double number_elite = 1;
double mutation_rate = 0.0;
double crossover_rate = 0.6;
double reproduction_rate = 0.3;
size_t max_tree_height = 8;
size_t tournament_size = 15;
auto tree_generator = gpcxx::make_basic_generate_strategy( rng , node_generator , max_tree_height , max_tree_height );
// size_t min_tree_height = 1
// auto new_tree_generator = gpcxx::make_ramp( rng , node_generator , min_tree_height , max_tree_height , 0.5 );
typedef gpcxx::static_pipeline< population_type , fitness_type , rng_type > evolver_type;
evolver_type evolver( number_elite , mutation_rate , crossover_rate , reproduction_rate , rng );
std::vector< double > fitness( population_size , 0.0 );
std::vector< tree_type > population( population_size );
evolver.mutation_function() = gpcxx::make_mutation(
gpcxx::make_simple_mutation_strategy( rng , node_generator ) ,
gpcxx::make_tournament_selector( rng , tournament_size ) );
evolver.crossover_function() = gpcxx::make_crossover(
gpcxx::make_one_point_crossover_strategy( rng , max_tree_height ) ,
gpcxx::make_tournament_selector( rng , tournament_size ) );
evolver.reproduction_function() = gpcxx::make_reproduce(
gpcxx::make_tournament_selector( rng , tournament_size ) );
gpcxx::timer timer;
auto fitness_f = gpcxx::make_regression_fitness( evaluator() );
// initialize population with random trees and evaluate fitness
timer.restart();
for( size_t i=0 ; i<population.size() ; ++i )
{
tree_generator( population[i] );
fitness[i] = fitness_f( population[i] , c );
}
std::cout << gpcxx::indent( 0 ) << "Generation time " << timer.seconds() << std::endl;
std::cout << gpcxx::indent( 1 ) << "Best individuals" << std::endl << gpcxx::best_individuals( population , fitness , 1 , 10 ) << std::endl;
std::cout << gpcxx::indent( 1 ) << "Statistics : " << gpcxx::calc_population_statistics( population ) << std::endl;
std::cout << gpcxx::indent( 1 ) << std::endl << std::endl;
write_height_hist( population , "initial_height.hist" );
write_size_hist( population , "initial_size.hist" );
timer.restart();
for( size_t generation=1 ; generation<=generation_size ; ++generation )
{
gpcxx::timer iteration_timer;
iteration_timer.restart();
evolver.next_generation( population , fitness );
double evolve_time = iteration_timer.seconds();
iteration_timer.restart();
std::transform( population.begin() , population.end() , fitness.begin() , [&]( tree_type const &t ) { return fitness_f( t , c ); } );
double eval_time = iteration_timer.seconds();
write_height_hist( population , "height_" + std::to_string( generation ) + ".hist" );
write_size_hist( population , "size_" + std::to_string( generation ) + ".hist" );
std::cout << gpcxx::indent( 0 ) << "Generation " << generation << std::endl;
std::cout << gpcxx::indent( 1 ) << "Evolve time " << evolve_time << std::endl;
std::cout << gpcxx::indent( 1 ) << "Eval time " << eval_time << std::endl;
std::cout << gpcxx::indent( 1 ) << "Best individuals" << std::endl << gpcxx::best_individuals( population , fitness , 2 , 10 ) << std::endl;
std::cout << gpcxx::indent( 1 ) << "Statistics : " << gpcxx::calc_population_statistics( population ) << std::endl << std::endl;
}
std::cout << "Overall time : " << timer.seconds() << std::endl;
// generate_data();
// init_constants();
// init_node_types(); // init generators
// init_population();
// evolve();
// report();
return 0;
}
bool FilterMatchList(const char *sift_list, const char *match_list, const char *output, size_t num_matches)
{
std::vector<std::string> sift_filenames;
tw::IO::ExtractLines(sift_list, sift_filenames);
size_t image_num = sift_filenames.size();
num_matches = num_matches > image_num ? image_num : num_matches;
std::ifstream fin(match_list);
if(!fin.is_open())
{
std::cout << "[FilterMatchList] Fail to open the vocabulary tree match output\n";
return false;
}
else
{
std::cout << "[FilterMatchList] Read the vocabulary tree match file: " << match_list << '\n';
}
std::string line;
size_t index0, index1;
float score;
std::vector<std::vector<size_t> > top_matches;
top_matches.resize(image_num);
while(!fin.eof())
{
std::getline(fin, line);
if(line == "")
continue;
std::stringstream line_stream;
line_stream << line;
line_stream >> index0 >> index1 >> score;
if(index0 >= sift_filenames.size() || index1 >= sift_filenames.size())
{
std::cout << "[FilterMatchList] Invalid index pair: " << index0 << " " << index1 << '\n';
continue;
}
// find top-'num_matches' pairs
if(top_matches[index0].size() < num_matches && index0 != index1 && score > 0)
{
top_matches[index0].push_back(index1);
}
}
fin.close();
std::vector<std::vector<size_t> > filtered_matches;
filtered_matches.resize(image_num);
for(size_t i = 0; i < image_num; i++)
{
for(size_t j = 0; j < top_matches[i].size(); j++)
{
index0 = i;
index1 = top_matches[i][j];
if(index0 > index1)
std::swap(index0, index1);
filtered_matches[index0].push_back(index1);
}
}
// get unique match pairs
for(size_t i = 0; i < image_num; i++)
{
std::sort(filtered_matches[i].begin(), filtered_matches[i].end());
filtered_matches[i].erase(std::unique(filtered_matches[i].begin(), filtered_matches[i].end()), filtered_matches[i].end());
}
// write match pairs (names and indexes) to two files
std::string sift_index_file(output);
std::string sift_name_file = sift_index_file+".txt";
std::ofstream fout(sift_name_file); // used for match (sift filenames pairs)
std::ofstream fout1(sift_index_file); // used for query expansion (sift index pairs)
if(!fout.is_open() || !fout1.is_open())
{
std::cout << "[FilterMatchList] Fail to open the filtered match file\n";
return false;
}
else
{
std::cout << "[FilterMatchList] Write the filtered index file " << sift_index_file << '\n';
}
for(size_t i = 0; i < image_num; i++)
{
for(size_t j = 0; j < filtered_matches[i].size(); j++)
{
fout << sift_filenames[i] << " " << sift_filenames[filtered_matches[i][j]] << '\n';
}
}
fout.close();
for(size_t i = 0; i < image_num; i++)
{
for(size_t j = 0; j < top_matches[i].size(); j++)
{
fout1 << i << " " << top_matches[i][j] << '\n';
}
}
fout1.close();
return true;
}
void main(){
string thestring = "Position";
string txtfilename = thestring + ".txt";
string shiftHead = "shiftParameters_";
string residualHead = "residuals_";
string ResidualRHead="Residual_";
string foutname = shiftHead+thestring+"_alignTrackers.txt";
string fout1name = residualHead+thestring+"_alignTrackers.txt";
fstream fin(txtfilename.c_str(),ios::in);
if(!fin){cout<<"file not read"<<endl; return;}
fstream fout(foutname.c_str(),ios::out);
fstream fout1(fout1name.c_str(),ios::out);
double pREF2X=0.0, pREF2Y=0.0;
double pREF3X=0.0, pREF3Y=0.0;
double pUVA3X=0.0, pUVA3Y=0.0;
double pREF1X=0.0, pREF1Y=0.0;
//double pZZ1=0.0, pZZ2=0.0;
double pEta5=0.0;
vector<double> vpREF2X; vector<double> vpREF2Y;
vector<double> vpREF3X; vector<double> vpREF3Y;
vector<double> vpUVA3X; vector<double> vpUVA3Y;
vector<double> vpREF1X; vector<double> vpREF1Y;
//vector<double> vpZZ1; vector<double> vpZZ2;
// vector<double> vpEta5;
Int_t nbLines=0;
while(fin>>pREF2X>>pREF2Y>>pREF3X>>pREF3Y>>pUVA3X>>pUVA3Y>>pREF1X>>pREF1Y/*>>pEta5*/){
vpREF2X.push_back(pREF2X); vpREF2Y.push_back(pREF2Y); vpREF3X.push_back(pREF3X); vpREF3Y.push_back(pREF3Y);
vpUVA3X.push_back(pUVA3X); vpUVA3Y.push_back(pUVA3Y); vpREF1X.push_back(pREF1X); vpREF1Y.push_back(pREF1Y);
//vpZZ1.push_back(pZZ1); vpZZ2.push_back(pZZ2);
// vpEta5.push_back(pEta5);
nbLines++;
}
fin.close();
/*
REF2X:
[-30,-20]: -22.98, 1.089, -28.29, -3.209, -37.22, 14.88, -46.62, -2.411, 29.84
[-20,-15]: -17.07, 0.4154, -22.27, -3.92, -31.12, 14.55, -40.55, -2.637, 29.48
*/
double shiREF2X=12.25640557, shiREF2Y=2.03531933;
double shiREF3X=7.467908772, shiREF3Y=-2.35761;
double shiUVA3X=-0.73056, shiUVA3Y=15.74758;
double shiREF1X=-9.94956, shiREF1Y=-0.70242;
//double shiZZ1=0, shiZZ2=0;
//double shiEta5=30.1;
double meanREF2X=0.0, meanREF2Y=0.0;
double meanREF3X=0.0, meanREF3Y=0.0;
double meanUVA3X=0.0, meanUVA3Y=0.0;
double meanREF1X=0.0, meanREF1Y=0.0;
//double meanZZ1=0.0, meanZZ2=0.0;
//double meanEta5=0;
Int_t iterNb=0;
while(1){
char rootfile[50]; sprintf(rootfile,"_iter_%i.root",iterNb);
string outputrootname=ResidualRHead+thestring+rootfile;
TFile* f = new TFile(outputrootname.c_str(),"recreate");
iterNb++;
char name2X[15];sprintf(name2X,"posREF2X_%i",iterNb); char name2Y[15];sprintf(name2Y,"posREF2Y_%i",iterNb);
char name3X[15];sprintf(name3X,"posREF3X_%i",iterNb); char name3Y[15];sprintf(name3Y,"posREF3Y_%i",iterNb);
char nameu3X[15];sprintf(nameu3X,"posUVA3X_%i",iterNb);char nameu3Y[15];sprintf(nameu3Y,"posUVA3Y_%i",iterNb);
char name1X[15];sprintf(name1X,"posREF1X_%i",iterNb); char name1Y[15];sprintf(name1Y,"posREF1Y_%i",iterNb);
//char nameZZ1[15];sprintf(nameZZ1,"pos10cmZZ1_%i",iterNb); char nameZZ2[15];sprintf(nameZZ2,"pos10cmZZ2_%i",iterNb);
//char nameEta5[15];sprintf(nameEta5,"posEta5_%i",iterNb);
TH1F* hpREF2X = new TH1F(name2X,"",500,-50,50); hpREF2X->SetXTitle("mm"); hpREF2X->SetYTitle("Frequency");hpREF2X->SetLabelSize(0.045,"XY");hpREF2X->SetTitleSize(0.045,"XY");
TH1F* hpREF2Y = new TH1F(name2Y,"",500,-50,50); hpREF2Y->SetXTitle("mm"); hpREF2Y->SetYTitle("Frequency");hpREF2Y->SetLabelSize(0.045,"XY");hpREF2Y->SetTitleSize(0.045,"XY");
TH1F* hpREF3X = new TH1F(name3X,"",500,-50,50); hpREF3X->SetXTitle("mm"); hpREF3X->SetYTitle("Frequency");hpREF3X->SetLabelSize(0.045,"XY");hpREF3X->SetTitleSize(0.045,"XY");
TH1F* hpREF3Y = new TH1F(name3Y,"",500,-50,50); hpREF3Y->SetXTitle("mm"); hpREF3Y->SetYTitle("Frequency");hpREF3Y->SetLabelSize(0.045,"XY");hpREF3Y->SetTitleSize(0.045,"XY");
TH1F* hpUVA3X = new TH1F(nameu3X,"",500,-50,50); hpUVA3X->SetXTitle("mm"); hpUVA3X->SetYTitle("Frequency");hpUVA3X->SetLabelSize(0.045,"XY");hpUVA3X->SetTitleSize(0.045,"XY");
TH1F* hpUVA3Y = new TH1F(nameu3Y,"",500,-50,50); hpUVA3Y->SetXTitle("mm"); hpUVA3Y->SetYTitle("Frequency");hpUVA3Y->SetLabelSize(0.045,"XY");hpUVA3Y->SetTitleSize(0.045,"XY");
TH1F* hpREF1X = new TH1F(name1X,"",500,-50,50); hpREF1X->SetXTitle("mm"); hpREF1X->SetYTitle("Frequency");hpREF1X->SetLabelSize(0.045,"XY");hpREF1X->SetTitleSize(0.045,"XY");
TH1F* hpREF1Y = new TH1F(name1Y,"",500,-50,50); hpREF1Y->SetXTitle("mm"); hpREF1Y->SetYTitle("Frequency");hpREF1Y->SetLabelSize(0.045,"XY");hpREF1Y->SetTitleSize(0.045,"XY");
//TH1F* hpZZ1 = new TH1F(nameZZ1,"",600,-150,150); hpZZ1->SetXTitle("mm"); hpZZ1->SetYTitle("Frequency"); hpZZ1->SetLabelSize(0.045,"XY");hpZZ1->SetTitleSize(0.045,"XY");
//TH1F* hpZZ2 = new TH1F(nameZZ2,"",600,-150,150); hpZZ2->SetXTitle("mm"); hpZZ2->SetYTitle("Frequency"); hpZZ2->SetLabelSize(0.045,"XY");hpZZ2->SetTitleSize(0.045,"XY");
//TH1F* hpEta5 = new TH1F(nameEta5,"",600,-150,150); hpEta5->SetXTitle("mm"); hpEta5->SetYTitle("Frequency"); hpEta5->SetLabelSize(0.045,"XY");hpEta5->SetTitleSize(0.045,"XY");
char nameRes2X[20];sprintf(nameRes2X,"residualREF2X_%i",iterNb);char nameRes2Y[20];sprintf(nameRes2Y,"residualREF2Y_%i",iterNb);
char nameRes3X[20];sprintf(nameRes3X,"residualREF3X_%i",iterNb);char nameRes3Y[20];sprintf(nameRes3Y,"residualREF3Y_%i",iterNb);
char nameResu3X[20];sprintf(nameResu3X,"residualUVA3X_%i",iterNb);char nameResu3Y[20];sprintf(nameResu3Y,"residualUVA3Y_%i",iterNb);
char nameRes1X[20];sprintf(nameRes1X,"residualREF1X_%i",iterNb);char nameRes1Y[20];sprintf(nameRes1Y,"residualREF1Y_%i",iterNb);
//char nameResZZ1[20];sprintf(nameResZZ1,"residualZZ1_%i",iterNb);char nameResZZ2[20];sprintf(nameResZZ2,"residualZZ2_%i",iterNb);
//char nameResEta5[20];sprintf(nameResEta5,"residualEta5_%i",iterNb);
TH1F* residualREF2X = new TH1F(nameRes2X,"",800,-8,8); residualREF2X->SetXTitle("Residual [mm]"); residualREF2X->SetYTitle("Frequency");residualREF2X->SetLabelSize(0.045,"XY");residualREF2X->SetTitleSize(0.045,"XY");
TH1F* residualREF2Y = new TH1F(nameRes2Y,"",800,-8,8); residualREF2Y->SetXTitle("Residual [mm]"); residualREF2Y->SetYTitle("Frequency");residualREF2Y->SetLabelSize(0.045,"XY");residualREF2Y->SetTitleSize(0.045,"XY");
TH1F* residualREF3X = new TH1F(nameRes3X,"",800,-8,8); residualREF3X->SetXTitle("Residual [mm]"); residualREF3X->SetYTitle("Frequency");residualREF3X->SetLabelSize(0.045,"XY");residualREF3X->SetTitleSize(0.045,"XY");
TH1F* residualREF3Y = new TH1F(nameRes3Y,"",800,-8,8); residualREF3Y->SetXTitle("Residual [mm]"); residualREF3Y->SetYTitle("Frequency");residualREF3Y->SetLabelSize(0.045,"XY");residualREF3Y->SetTitleSize(0.045,"XY");
TH1F* residualUVA3X = new TH1F(nameResu3X,"",800,-8,8); residualUVA3X->SetXTitle("Residual [mm]"); residualUVA3X->SetYTitle("Frequency");residualUVA3X->SetLabelSize(0.045,"XY");residualUVA3X->SetTitleSize(0.045,"XY");
TH1F* residualUVA3Y = new TH1F(nameResu3Y,"",800,-8,8); residualUVA3Y->SetXTitle("Residual [mm]"); residualUVA3Y->SetYTitle("Frequency");residualUVA3Y->SetLabelSize(0.045,"XY");residualUVA3Y->SetTitleSize(0.045,"XY");
TH1F* residualREF1X = new TH1F(nameRes1X,"",800,-8,8); residualREF1X->SetXTitle("mm"); residualREF1X->SetYTitle("Frequency");residualREF1X->SetLabelSize(0.045,"XY");residualREF1X->SetTitleSize(0.045,"XY");
TH1F* residualREF1Y = new TH1F(nameRes1Y,"",800,-8,8); residualREF1Y->SetXTitle("mm"); residualREF1Y->SetYTitle("Frequency");residualREF1Y->SetLabelSize(0.045,"XY");residualREF1Y->SetTitleSize(0.045,"XY");
//TH1F* residualZZ1 = new TH1F(nameResZZ1,"",320,-16,16); residualZZ1->SetXTitle("Residual [mm]"); residualZZ1->SetYTitle("Frequency");residualZZ1->SetLabelSize(0.045,"XY");residualZZ1->SetTitleSize(0.045,"XY");
//TH1F* residualZZ2 = new TH1F(nameResZZ2,"",320,-16,16); residualZZ2->SetXTitle("Residual [mm]"); residualZZ2->SetYTitle("Frequency");residualZZ2->SetLabelSize(0.045,"XY");residualZZ2->SetTitleSize(0.045,"XY");
//TH1F* residualEta5 = new TH1F(nameResEta5,"",320,-16,16); residualEta5->SetXTitle("Residual [mm]"); residualEta5->SetYTitle("Frequency");residualEta5->SetLabelSize(0.045,"XY");residualEta5->SetTitleSize(0.045,"XY");
/*
char nameDxREF3X[20]; sprintf(nameDxREF3X,"REF3X_REF2X_%i",iterNb); char nameDyREF3Y[20]; sprintf(nameDyREF3Y,"REF3Y_REF2Y_%i",iterNb);
char nameDxUVA3X[20]; sprintf(nameDxUVA3X,"UVA3X_REF2X_%i",iterNb); char nameDyUVA3Y[20]; sprintf(nameDyUVA3Y,"UVA3Y_REF2Y_%i",iterNb);
char nameDxREF1X[20]; sprintf(nameDxREF1X,"REF1X_REF2X_%i",iterNb); char nameDyREF1Y[20]; sprintf(nameDyREF1Y,"REF1Y_REF2Y_%i",iterNb);
TH1F* dxREF3X = new TH1F(nameDxREF3X,"",400,-4,4); dxREF3X->SetXTitle("Delta_X_REF3X_REF2X [mm]"); dxREF3X->SetYTitle("Frequency");dxREF3X->SetLabelSize(0.045,"XY"); dxREF3X->SetTitleSize(0.045,"XY");
TH1F* dxUVA3X = new TH1F(nameDxUVA3X,"",400,-4,4); dxUVA3X->SetXTitle("Delta_X_UVA3X_REF2X [mm]"); dxUVA3X->SetYTitle("Frequency");dxUVA3X->SetLabelSize(0.045,"XY"); dxUVA3X->SetTitleSize(0.045,"XY");
TH1F* dxREF1X = new TH1F(nameDxREF1X,"",400,-4,4); dxREF1X->SetXTitle("Delta_X_REF1X_REF2X [mm]"); dxREF1X->SetYTitle("Frequency");dxREF1X->SetLabelSize(0.045,"XY"); dxREF1X->SetTitleSize(0.045,"XY");
TH1F* dyREF3Y = new TH1F(nameDyREF3Y,"",400,-4,4); dyREF3Y->SetXTitle("Delta_Y_REF3Y_REF2Y [mm]"); dyREF3Y->SetYTitle("Frequency");dyREF3Y->SetLabelSize(0.045,"XY"); dyREF3Y->SetTitleSize(0.045,"XY");
TH1F* dyUVA3Y = new TH1F(nameDyUVA3Y,"",400,-4,4); dyUVA3Y->SetXTitle("Delta_Y_UVA3Y_REF2Y [mm]"); dyUVA3Y->SetYTitle("Frequency");dyUVA3Y->SetLabelSize(0.045,"XY"); dyUVA3Y->SetTitleSize(0.045,"XY");
TH1F* dyREF1Y = new TH1F(nameDyREF1Y,"",400,-4,4); dyREF1Y->SetXTitle("Delta_Y_REF1Y_REF2Y [mm]"); dyREF1Y->SetYTitle("Frequency");dyREF1Y->SetLabelSize(0.045,"XY"); dyREF1Y->SetTitleSize(0.045,"XY");
char nameDxUVA3REF3[20]; sprintf(nameDxUVA3REF3,"UVA3X_REF3X_%i",iterNb);
char nameDxREF1UVA3[20]; sprintf(nameDxREF1UVA3,"REF1X_UVA3X_%i",iterNb);
char nameDyUVA3REF3[20]; sprintf(nameDyUVA3REF3,"UVA3Y_REF3Y_%i",iterNb);
char nameDyREF1UVA3[20]; sprintf(nameDyREF1UVA3,"REF1Y_UVA3Y_%i",iterNb);
TH1F* dxUVA3REF3 = new TH1F(nameDxUVA3REF3,"",400,-4,4); dxUVA3REF3->SetXTitle("Delta_X_UVA3X_REF3X [mm]"); dxUVA3REF3->SetYTitle("Frequency"); dxUVA3REF3->SetLabelSize(0.045,"XY"); dxUVA3REF3->SetTitleSize(0.045,"XY");
TH1F* dxREF1UVA3 = new TH1F(nameDxREF1UVA3,"",400,-4,4); dxREF1UVA3->SetXTitle("Delta_X_REF1X_UVA3X [mm]"); dxREF1UVA3->SetYTitle("Frequency"); dxREF1UVA3->SetLabelSize(0.045,"XY"); dxUVA3REF3->SetTitleSize(0.045,"XY");
TH1F* dyUVA3REF3 = new TH1F(nameDyUVA3REF3,"",400,-4,4); dyUVA3REF3->SetXTitle("Delta_Y_UVA3Y_REF3Y [mm]"); dyUVA3REF3->SetYTitle("Frequency"); dyUVA3REF3->SetLabelSize(0.045,"XY"); dyUVA3REF3->SetTitleSize(0.045,"XY");
TH1F* dyREF1UVA3 = new TH1F(nameDyREF1UVA3,"",400,-4,4); dyREF1UVA3->SetXTitle("Delta_Y_REF1Y_UVA3Y [mm]"); dyREF1UVA3->SetYTitle("Frequency"); dyREF1UVA3->SetLabelSize(0.045,"XY"); dxUVA3REF3->SetTitleSize(0.045,"XY");
*/
//delta-y up: 200,-4,4
//TH1F* deltayZZ = new TH1F("deltaY","",200,-4,4); deltayZZ->SetXTitle("Position difference [mm]");deltayZZ->SetYTitle("Frequency");
//deltayZZ->SetLabelSize(0.045,"XY");deltayZZ->SetTitleSize(0.045,"XY");
//cout<<"shift: "<<shiREF2X<<"\t"<<shiREF2Y<<"\t"<<shiREF3X<<"\t"<<shiREF3Y<<"\t"<<shiUVA3X<<"\t"<<shiUVA3Y<<"\t"<<shiREF1X<<"\t"<<shiREF1Y<<"\t"<<shiEta5<<endl;
fout<<shiREF2X<<"\t"<<shiREF2Y<<"\t"<<shiREF3X<<"\t"<<shiREF3Y<<"\t"<<shiUVA3X<<"\t"<<shiUVA3Y<<"\t"<<shiREF1X<<"\t"<<shiREF1Y<<endl;
int nnnn=0;
for(Int_t i=0;i<vpREF2X.size();i++){
vpREF2X[i] = vpREF2X[i] - shiREF2X; vpREF2Y[i] = vpREF2Y[i] - shiREF2Y;
vpREF3X[i] = vpREF3X[i] - shiREF3X; vpREF3Y[i] = vpREF3Y[i] - shiREF3Y;
vpUVA3X[i] = vpUVA3X[i] - shiUVA3X; vpUVA3Y[i] = vpUVA3Y[i] - shiUVA3Y;
vpREF1X[i] = vpREF1X[i] - shiREF1X; vpREF1Y[i] = vpREF1Y[i] - shiREF1Y;
// vpZZ1[i] = vpZZ1[i] - shiZZ1; vpZZ2[i] = vpZZ2[i] - shiZZ2;
//vpEta5[i] = vpEta5[i] - shiEta5;
hpREF2X->Fill(vpREF2X[i]); hpREF2Y->Fill(vpREF2Y[i]);
hpREF3X->Fill(vpREF3X[i]); hpREF3Y->Fill(vpREF3Y[i]);
hpUVA3X->Fill(vpUVA3X[i]); hpUVA3Y->Fill(vpUVA3Y[i]);
hpREF1X->Fill(vpREF1X[i]); hpREF1Y->Fill(vpREF1Y[i]);
//hpZZ1->Fill(vpZZ1[i]); hpZZ2->Fill(vpZZ2[i]);
// hpEta5->Fill(vpEta5[i]); //cout<<vpEta5[i]<<endl;
//dxREF3X->Fill(vpREF3X[i]-vpREF2X[i]); dyREF3Y->Fill(vpREF3Y[i]-vpREF2Y[i]);
//dxUVA3X->Fill(vpUVA3X[i]-vpREF2X[i]); dyUVA3Y->Fill(vpUVA3Y[i]-vpREF2Y[i]);
//dxREF1X->Fill(vpREF1X[i]-vpREF2X[i]); dyREF1Y->Fill(vpREF1Y[i]-vpREF2Y[i]);
//dxUVA3REF3->Fill(vpUVA3X[i]-vpREF3X[i]); dyUVA3REF3->Fill(vpUVA3Y[i]-vpREF3Y[i]);
//dxREF1UVA3->Fill(vpREF1X[i]-vpUVA3X[i]); dyREF1UVA3->Fill(vpREF1Y[i]-vpUVA3Y[i]);
TGraph* g1 = new TGraph();
g1->SetPoint(0,0, vpREF2X[i]);
g1->SetPoint(1,1143.5,vpREF3X[i]);
g1->SetPoint(2,2686.5,vpUVA3X[i]);
g1->SetPoint(3,3169.5,vpREF1X[i]);
TF1* f1 = new TF1("line1","[0]+[1]*x",0,3200);
g1->Fit("line1","Q");
double intercept1 = f1->GetParameter(0);
double slope1 = f1->GetParameter(1);
double MeasuredREF2X = intercept1 + slope1*0.0;
double MeasuredREF3X = intercept1 + slope1*1143.5;
double MeasuredUVA3X = intercept1 + slope1*2686.5;
double MeasuredREF1X = intercept1 + slope1*3169.5;
residualREF2X->Fill(MeasuredREF2X-vpREF2X[i]);
residualREF3X->Fill(MeasuredREF3X-vpREF3X[i]);
residualUVA3X->Fill(MeasuredUVA3X-vpUVA3X[i]);
residualREF1X->Fill(MeasuredREF1X-vpREF1X[i]);
delete f1; delete g1;
TGraph* g2 = new TGraph();
g2->SetPoint(0,0, vpREF2Y[i]);
g2->SetPoint(1,1143.5,vpREF3Y[i]);
// exclusive
g2->SetPoint(2,2686.5,vpUVA3Y[i]);
g2->SetPoint(3,3169.5,vpREF1Y[i]);
// inclusive
//g2->SetPoint(2,2305.5,vpZZ2[i]); //inclusive 1
//g2->SetPoint(2,2327.5,vpZZ1[i]); //inclusive 2
//g2->SetPoint(3,2686.5,vpUVA3Y[i]);
//g2->SetPoint(4,3169.5,vpREF1Y[i]);
//g2->SetPoint(3,3169.5,vpREF1Y[i]);
TF1* f2 = new TF1("line2","[0]+[1]*x",0,3200);
g2->Fit("line2","Q");
double intercept2 = f2->GetParameter(0);
double slope2 = f2->GetParameter(1);
double MeasuredREF2Y = intercept2 + slope2*0.0;
double MeasuredREF3Y = intercept2 + slope2*1143.5;
double MeasuredUVA3Y = intercept2 + slope2*2686.5;
double MeasuredREF1Y = intercept2 + slope2*3169.5;
//double MeasuredZZ1 = intercept2 + slope2*2327.5;
//double MeasuredZZ2 = intercept2 + slope2*2305.5;
//double MeasuredEta5 = intercept2 + slope2*2011.5;
residualREF2Y->Fill(MeasuredREF2Y-vpREF2Y[i]);
residualREF3Y->Fill(MeasuredREF3Y-vpREF3Y[i]);
residualUVA3Y->Fill(MeasuredUVA3Y-vpUVA3Y[i]);
residualREF1Y->Fill(MeasuredREF1Y-vpREF1Y[i]);
//residualZZ1->Fill(MeasuredZZ1-vpZZ1[i]);
//residualZZ2->Fill(MeasuredZZ2-vpZZ2[i]);
//residualEta5->Fill(MeasuredEta5-vpEta5[i]);
//deltayZZ->Fill(vpZZ1[i]-vpZZ2[i]);
delete f2; delete g2;
nnnn++;
//if(nnnn%1000==0) cout<<nnnn<<"......"<<endl;
//if(nnnn>1000) break;
} //for loop
//cout<<"after for loop"<<endl;
gStyle->SetOptFit(1111);
I2GFvalues myValues;
myValues = I2GFmainLoop(residualREF2X,1,10,1);
meanREF2X = myValues.mean; //sigmaEta5=myValues.sigma;
myValues = I2GFmainLoop(residualREF2Y,1,10,1);
meanREF2Y = myValues.mean; //
myValues = I2GFmainLoop(residualREF3X,1,10,1);
meanREF3X = myValues.mean; //
myValues = I2GFmainLoop(residualREF3Y,1,10,1);
meanREF3Y = myValues.mean;
myValues = I2GFmainLoop(residualUVA3X,1,10,1);
meanUVA3X = myValues.mean; //
myValues = I2GFmainLoop(residualUVA3Y,1,10,1);
meanUVA3Y = myValues.mean;
myValues = I2GFmainLoop(residualREF1X,1,10,1);
meanREF1X = myValues.mean; //
myValues = I2GFmainLoop(residualREF1Y,1,10,1);
meanREF1Y = myValues.mean;
/*
double maximum = residualREF2X->GetMean();
double rms = residualREF2X->GetRMS(1);
double lRange = maximum - rms*0.75;
double hRange = maximum + rms*0.75;
TF1* funResidualREF2X = new TF1("funResidualREF2X","gaus",lRange,hRange);funResidualREF2X->SetLineColor(kBlue); residualREF2X->Fit("funResidualREF2X","RQ");
meanREF2X = funResidualREF2X->GetParameter(1);
maximum = residualREF2Y->GetMean();
rms = residualREF2Y->GetRMS(1);
lRange = maximum - rms*0.75; hRange = maximum + rms*0.75;
TF1* funResidualREF2Y = new TF1("funResidualREF2Y","gaus",lRange,hRange);funResidualREF2Y->SetLineColor(kBlue); residualREF2Y->Fit("funResidualREF2Y","RQ");
meanREF2Y = funResidualREF2Y->GetParameter(1);
maximum = residualREF3X->GetMean();
rms = residualREF3X->GetRMS(1);
lRange = maximum - rms*0.75; hRange = maximum + rms*0.75;
TF1* funResidualREF3X = new TF1("funResidualREF3X","gaus",lRange,hRange);funResidualREF3X->SetLineColor(kBlue); residualREF3X->Fit("funResidualREF3X","RQ");
meanREF3X = funResidualREF3X->GetParameter(1);
maximum = residualREF3Y->GetMean();
rms = residualREF3Y->GetRMS(1);
lRange = maximum - rms*0.75; hRange = maximum + rms*0.75;
TF1* funResidualREF3Y = new TF1("funResidualREF3Y","gaus",lRange,hRange);funResidualREF3Y->SetLineColor(kBlue); residualREF3Y->Fit("funResidualREF3Y","RQ");
meanREF3Y = funResidualREF3Y->GetParameter(1);
maximum = residualUVA3X->GetMean();
rms = residualUVA3X->GetRMS(1);
lRange = maximum - rms*0.75; hRange = maximum + rms*0.75;
TF1* funResidualUVA3X = new TF1("funResidualUVA3X","gaus",lRange,hRange);funResidualUVA3X->SetLineColor(kBlue); residualUVA3X->Fit("funResidualUVA3X","RQ");
meanUVA3X = funResidualUVA3X->GetParameter(1);
maximum = residualUVA3Y->GetMean();
rms = residualUVA3Y->GetRMS(1);
lRange = maximum - rms*0.75; hRange = maximum + rms*0.75;
TF1* funResidualUVA3Y = new TF1("funResidualUVA3Y","gaus",lRange,hRange);funResidualUVA3Y->SetLineColor(kBlue); residualUVA3Y->Fit("funResidualUVA3Y","RQ");
meanUVA3Y = funResidualUVA3Y->GetParameter(1);
maximum = residualREF1X->GetMean();
rms = residualREF1X->GetRMS(1);
lRange = maximum - rms*0.75; hRange = maximum + rms*0.75;
TF1* funResidualREF1X = new TF1("funResidualREF1X","gaus",lRange,hRange);funResidualREF1X->SetLineColor(kBlue); residualREF1X->Fit("funResidualREF1X","RQ");
meanREF1X = funResidualREF1X->GetParameter(1);
maximum = residualREF1Y->GetMean();
rms = residualREF1Y->GetRMS(1);
lRange = maximum - rms*0.75; hRange = maximum + rms*0.75;
TF1* funResidualREF1Y = new TF1("funResidualREF1Y","gaus",lRange,hRange);funResidualREF1Y->SetLineColor(kBlue); residualREF1Y->Fit("funResidualREF1Y","RQ");
meanREF1Y = funResidualREF1Y->GetParameter(1);
//maximum = residualEta5->GetMean();
maximum=residualEta5->GetXaxis()->GetBinCenter(residualEta5->GetMaximumBin());
rms = residualEta5->GetRMS(1);
lRange = maximum - rms*0.15; hRange = maximum + rms*0.15;
TF1* funResidualEta5 = new TF1("funResidualEta5","gaus",lRange,hRange);funResidualEta5->SetLineColor(kBlue); residualEta5->Fit("funResidualEta5","RQ");
meanEta5 = funResidualEta5->GetParameter(1);
*/
//maximum = residualZZ1->GetMean();
/*
maximum = residualZZ1->GetXaxis()->GetBinCenter(residualZZ1->GetMaximumBin());//cout<<"...."<<maximum<<"...";
rms = residualZZ1->GetRMS(1);
lRange = maximum - rms*0.1; hRange = maximum + rms*0.1;
TF1* funResidualZZ1 = new TF1("funResidualZZ1","gaus",lRange,hRange);funResidualZZ1->SetLineColor(kBlue); residualZZ1->Fit("funResidualZZ1","RQ");
meanZZ1 = funResidualZZ1->GetParameter(1);
maximum = residualZZ2->GetXaxis()->GetBinCenter(residualZZ2->GetMaximumBin());//cout<<"...."<<maximum<<"..."<<endl;
//maximum = residualZZ2->GetMean();
rms = residualZZ2->GetRMS(1);
lRange = maximum - rms*0.1; hRange = maximum + rms*0.1;//1.4
TF1* funResidualZZ2 = new TF1("funResidualZZ2","gaus",lRange,hRange);funResidualZZ2->SetLineColor(kBlue); residualZZ2->Fit("funResidualZZ2","RQ");
meanZZ2 = funResidualZZ2->GetParameter(1);
maximum = deltayZZ->GetMean();
rms = deltayZZ->GetRMS(1);
lRange = maximum - rms*1.4; hRange = maximum + rms*1.4;//1.4
TF1* funDeltaYZZ = new TF1("funDeltaYZZ","gaus",lRange,hRange);funDeltaYZZ->SetLineColor(kBlue); deltayZZ->Fit("funDeltaYZZ","RQ");
*/
cout<<"residual mean: "<<meanREF2X<<"\t"<<meanREF2Y<<"\t"<<meanREF3X<<"\t"<<meanREF3Y<<"\t"<<meanUVA3X<<"\t"<<meanUVA3Y<<"\t"<<meanREF1X<<"\t"<<meanREF1Y<<endl;
//<<meanZZ1<<"\t"<<meanZZ2<<endl;
fout1<<"residual mean: "<<meanREF2X<<"\t"<<meanREF2Y<<"\t"<<meanREF3X<<"\t"<<meanREF3Y<<"\t"<<meanUVA3X<<"\t"<<meanUVA3Y<<"\t"<<meanREF1X<<"\t"<<meanREF1Y<<endl;
//<<meanZZ1<<"\t"<<meanZZ2<<endl;
/*
maximum = dxREF3X->GetMean(); rms=dxREF3X->GetRMS(1); lRange=maximum-rms*1.1; hRange=maximum+1.10*rms;
TF1* funDxREF3X=new TF1("funDxREF3X","gaus",lRange,hRange); funDxREF3X->SetLineColor(kBlue); dxREF3X->Fit("funDxREF3X","RQ");
maximum = dxUVA3X->GetMean(); rms=dxUVA3X->GetRMS(1); lRange=maximum-rms*1.1; hRange=maximum+1.10*rms;
TF1* funDxUVA3X=new TF1("funDxUVA3X","gaus",lRange,hRange); funDxUVA3X->SetLineColor(kBlue); dxUVA3X->Fit("funDxUVA3X","RQ");
maximum = dxREF1X->GetMean(); rms=dxREF1X->GetRMS(1); lRange=maximum-rms*1.1; hRange=maximum+1.10*rms;
TF1* funDxREF1X=new TF1("funDxREF1X","gaus",lRange,hRange); funDxREF1X->SetLineColor(kBlue); dxREF1X->Fit("funDxREF1X","RQ");
maximum = dyREF3Y->GetMean(); rms=dyREF3Y->GetRMS(1); lRange=maximum-rms*1.1; hRange=maximum+1.10*rms;
TF1* funDyREF3Y=new TF1("funDyREF3Y","gaus",lRange,hRange); funDyREF3Y->SetLineColor(kBlue); dyREF3Y->Fit("funDyREF3Y","RQ");
maximum = dyUVA3Y->GetMean(); rms=dyUVA3Y->GetRMS(1); lRange=maximum-rms*1.1; hRange=maximum+1.10*rms;
TF1* funDyUVA3Y=new TF1("funDyUVA3Y","gaus",lRange,hRange); funDyUVA3Y->SetLineColor(kBlue); dyUVA3Y->Fit("funDyUVA3Y","RQ");
maximum = dyREF1Y->GetMean(); rms=dyREF1Y->GetRMS(1); lRange=maximum-rms*1.1; hRange=maximum+1.10*rms;
TF1* funDyREF1Y=new TF1("funDyREF1Y","gaus",lRange,hRange); funDyREF1Y->SetLineColor(kBlue); dyREF1Y->Fit("funDyREF1Y","RQ");
maximum = dxUVA3REF3->GetMean(); rms=dxUVA3REF3->GetRMS(1); lRange=maximum-rms*1.1; hRange=maximum+1.1*rms;
TF1* funDxUVA3REF3=new TF1("funDxUVA3REF3","gaus",lRange,hRange); funDxUVA3REF3->SetLineColor(kBlue); dxUVA3REF3->Fit("funDxUVA3REF3","RQ");
maximum = dxREF1UVA3->GetMean(); rms=dxREF1UVA3->GetRMS(1); lRange=maximum-rms*1.1; hRange=maximum+1.1*rms;
TF1* funDxREF1UVA3=new TF1("funDxREF1UVA3","gaus",lRange,hRange); funDxREF1UVA3->SetLineColor(kBlue); dxREF1UVA3->Fit("funDxREF1UVA3","RQ");
maximum = dyUVA3REF3->GetMean(); rms=dyUVA3REF3->GetRMS(1); lRange=maximum-rms*1.1; hRange=maximum+1.1*rms;
TF1* funDyUVA3REF3=new TF1("funDyUVA3REF3","gaus",lRange,hRange); funDyUVA3REF3->SetLineColor(kBlue); dyUVA3REF3->Fit("funDyUVA3REF3","RQ");
maximum = dyREF1UVA3->GetMean(); rms=dyREF1UVA3->GetRMS(1); lRange=maximum-rms*1.1; hRange=maximum+1.1*rms;
TF1* funDyREF1UVA3=new TF1("funDyREF1UVA3","gaus",lRange,hRange); funDyREF1UVA3->SetLineColor(kBlue); dyREF1UVA3->Fit("funDyREF1UVA3","RQ");
*/
f->Write();
f->Close();
//delete funPosEta5; delete funPosREF1Y; delete funPosUVA3Y; delete funPosREF3Y; delete funPosREF2Y;
//delete funResidualREF2X; delete funResidualREF2Y; delete funResidualREF3X; delete funResidualREF3Y;
//delete funResidualUVA3X; delete funResidualUVA3Y; delete funResidualREF1X; delete funResidualREF1Y; delete funResidualEta5; //delete funResidualZZ1;delete funResidualZZ2;
//delete funDxREF3X; delete funDxUVA3X; delete funDxREF1X; delete funDyREF3Y; delete funDyUVA3Y; delete funDyREF1Y;
//delete funDxUVA3REF3; delete funDxREF1UVA3; delete funDyUVA3REF3; delete funDyREF1UVA3;
double factor = -0.1;
shiREF2X = meanREF2X*factor; shiREF2Y = meanREF2Y*factor;
shiREF3X = meanREF3X*factor; shiREF3Y = meanREF3Y*factor;
shiUVA3X = meanUVA3X*factor; shiUVA3Y = meanUVA3Y*factor;
shiREF1X = meanREF1X*factor; shiREF1Y = meanREF1Y*factor;
//shiZZ1 = meanZZ1*factor; shiZZ2 = meanZZ2*factor;
//shiEta5 = meanEta5*factor;
//break;
if((meanREF2X>=-0.0005 && meanREF2X<=0.0005) && (meanREF2Y>=-0.0005 && meanREF2Y<=0.0005))
if((meanREF3X>=-0.0005 && meanREF3X<=0.0005) && (meanREF3Y>=-0.0005 && meanREF3Y<=0.0005))
if((meanUVA3X>=-0.0005 && meanUVA3X<=0.0005) && (meanUVA3Y>=-0.0005 && meanUVA3Y<=0.0005))
if((meanREF1X>=-0.0005 && meanREF1X<=0.0005) && (meanREF1Y>=-0.0005 && meanREF1Y<=0.0005))
{
cout<<"find it...iterating "<<iterNb<<" times."<<endl;
break;
}
if(iterNb>500) break;
}//while(1)
fout.close();
fout1.close();
} // entire script
int main(int argc, char **argv)
{
const bool release(argc >= 2 && std::string(argv[1]) == "--release");
// Get files..
std::vector<std::string> libfiles;
getCppFiles(libfiles, "lib/", false);
std::vector<std::string> extfiles;
extfiles.push_back("externals/simplecpp/simplecpp.cpp");
extfiles.push_back("externals/tinyxml/tinyxml2.cpp");
std::vector<std::string> clifiles;
getCppFiles(clifiles, "cli/", false);
std::vector<std::string> testfiles;
getCppFiles(testfiles, "test/", false);
std::vector<std::string> toolsfiles;
getCppFiles(toolsfiles, "tools/", false);
if (libfiles.empty() && clifiles.empty() && testfiles.empty()) {
std::cerr << "No files found. Are you in the correct directory?" << std::endl;
return EXIT_FAILURE;
}
// QMAKE - lib/lib.pri
{
std::ofstream fout1("lib/lib.pri");
if (fout1.is_open()) {
fout1 << "# no manual edits - this file is autogenerated by dmake\n\n";
fout1 << "include($$PWD/pcrerules.pri)\n";
fout1 << "include($$PWD/../externals/externals.pri)\n";
fout1 << "INCLUDEPATH += $$PWD\n";
fout1 << "HEADERS += $${PWD}/check.h \\\n";
for (unsigned int i = 0; i < libfiles.size(); ++i) {
std::string fname(libfiles[i].substr(4));
if (fname.find(".cpp") == std::string::npos)
continue; // shouldn't happen
fname.erase(fname.find(".cpp"));
fout1 << std::string(11, ' ') << "$${PWD}/" << fname << ".h";
if (i + 1 < testfiles.size())
fout1 << " \\\n";
}
fout1 << "\n\nSOURCES += ";
for (unsigned int i = 0; i < libfiles.size(); ++i) {
fout1 << "$${PWD}/" << libfiles[i].substr(4);
if (i < libfiles.size() - 1)
fout1 << " \\\n" << std::string(11, ' ');
}
fout1 << "\n";
}
}
// QMAKE - test/testfiles.pri
{
std::ofstream fout1("test/testfiles.pri");
if (fout1.is_open()) {
fout1 << "# no manual edits - this file is autogenerated by dmake\n\n";
fout1 << "INCLUDEPATH += ../externals/tinyxml\n";
fout1 << "\n\nSOURCES += ";
for (unsigned int i = 0; i < testfiles.size(); ++i) {
const std::string filename(testfiles[i].substr(5));
// Include only files containing tests in this listing.
// I.e. filenames beginning with "test".
if (filename.compare(0, 4, "test") == 0) {
fout1 << "$${BASEPATH}/" << filename;
if (i + 1 < testfiles.size())
fout1 << " \\\n" << std::string(11, ' ');
}
}
fout1 << "\n";
}
}
static const char makefile[] = "Makefile";
std::ofstream fout(makefile, std::ios_base::trunc);
if (!fout.is_open()) {
std::cerr << "An error occurred while trying to open "
<< makefile
<< ".\n";
return EXIT_FAILURE;
}
fout << "# This file is generated by tools/dmake, do not edit.\n\n";
fout << "# To compile with rules, use 'make HAVE_RULES=yes'\n";
makeConditionalVariable(fout, "HAVE_RULES", "no");
// compiled patterns..
fout << "# folder where lib/*.cpp files are located\n";
makeConditionalVariable(fout, "SRCDIR", "lib");
fout << "ifeq ($(SRCDIR),build)\n"
<< " ifdef VERIFY\n"
<< " matchcompiler_S := $(shell python tools/matchcompiler.py --verify)\n"
<< " else\n"
<< " matchcompiler_S := $(shell python tools/matchcompiler.py)\n"
<< " endif\n"
<< "endif\n\n";
// explicit cfg dir..
fout << "ifdef CFGDIR\n"
<< " CFG=-DCFGDIR=\\\"$(CFGDIR)\\\"\n"
<< "else\n"
<< " CFG=\n"
<< "endif\n\n";
// enable backtrac
fout << "RDYNAMIC=-rdynamic\n";
// The _GLIBCXX_DEBUG doesn't work in cygwin or other Win32 systems.
fout << "# Set the CPPCHK_GLIBCXX_DEBUG flag. This flag is not used in release Makefiles.\n"
<< "# The _GLIBCXX_DEBUG define doesn't work in Cygwin or other Win32 systems.\n"
<< "ifndef COMSPEC\n"
<< " ifdef ComSpec\n"
<< " #### ComSpec is defined on some WIN32's.\n"
<< " COMSPEC=$(ComSpec)\n"
<< " endif # ComSpec\n"
<< "endif # COMSPEC\n"
<< "\n"
<< "ifdef COMSPEC\n"
<< " #### Maybe Windows\n"
<< " ifndef CPPCHK_GLIBCXX_DEBUG\n"
<< " CPPCHK_GLIBCXX_DEBUG=\n"
<< " endif # !CPPCHK_GLIBCXX_DEBUG\n"
<< "\n"
<< " ifeq ($(MSYSTEM),MINGW32)\n"
<< " LDFLAGS=-lshlwapi\n"
<< " else\n"
<< " RDYNAMIC=-lshlwapi\n"
<< " endif\n"
<< "else # !COMSPEC\n"
<< " uname_S := $(shell sh -c 'uname -s 2>/dev/null || echo not')\n"
<< "\n"
<< " ifeq ($(uname_S),Linux)\n"
<< " ifndef CPPCHK_GLIBCXX_DEBUG\n"
<< " CPPCHK_GLIBCXX_DEBUG=-D_GLIBCXX_DEBUG\n"
<< " endif # !CPPCHK_GLIBCXX_DEBUG\n"
<< " endif # Linux\n"
<< "\n"
<< " ifeq ($(uname_S),GNU/kFreeBSD)\n"
<< " ifndef CPPCHK_GLIBCXX_DEBUG\n"
<< " CPPCHK_GLIBCXX_DEBUG=-D_GLIBCXX_DEBUG\n"
<< " endif # !CPPCHK_GLIBCXX_DEBUG\n"
<< " endif # GNU/kFreeBSD\n"
<< "\n"
<< "endif # COMSPEC\n"
<< "\n";
// tinymxl2 requires __STRICT_ANSI__ to be undefined to compile under CYGWIN.
fout << "# Set the UNDEF_STRICT_ANSI flag to address compile time warnings\n"
<< "# with tinyxml2 and Cygwin.\n"
<< "ifdef COMSPEC\n"
<< " uname_S := $(shell uname -s)\n"
<< "\n"
<< " ifneq (,$(findstring CYGWIN,$(uname_S)))\n"
<< " UNDEF_STRICT_ANSI=-U__STRICT_ANSI__\n"
<< " endif # CYGWIN\n"
<< "endif # COMSPEC\n"
<< "\n";
// skip "-D_GLIBCXX_DEBUG" if clang, since it breaks the build
makeConditionalVariable(fout, "CXX", "g++");
fout << "ifeq ($(CXX), clang++)\n"
<< " CPPCHK_GLIBCXX_DEBUG=\n"
<< "endif\n";
// Makefile settings..
if (release) {
makeConditionalVariable(fout, "CXXFLAGS", "-std=c++0x -O2 -include lib/cxx11emu.h -DNDEBUG -Wall -Wno-sign-compare");
} else {
// TODO: add more compiler warnings.
// -Wlogical-op : doesn't work on older GCC
// -Wsign-conversion : too many warnings
// -Wunreachable-code : some GCC versions report lots of warnings
makeConditionalVariable(fout, "CXXFLAGS",
"-include lib/cxx11emu.h "
"-pedantic "
"-Wall "
"-Wextra "
"-Wabi "
"-Wcast-qual "
// "-Wconversion " // danmar: gives fp. for instance: unsigned int sizeof_pointer = sizeof(void *);
"-Wfloat-equal "
"-Winline "
// "-Wlogical-op "
"-Wmissing-declarations "
"-Wmissing-format-attribute "
"-Wno-long-long "
// "-Woverloaded-virtual " // danmar: we get fp when overloading analyseWholeProgram()
"-Wpacked "
"-Wredundant-decls "
"-Wshadow "
// "-Wsign-conversion "
// "-Wsign-promo "
"-Wno-missing-field-initializers "
"-Wno-missing-braces "
// "-Wunreachable-code "
"-Wno-sign-compare " // danmar: I don't like this warning, it's very rarelly a bug
"-Wno-multichar "
"$(CPPCHK_GLIBCXX_DEBUG) "
"-g");
}
fout << "ifeq ($(CXX), g++)\n"
<< " override CXXFLAGS += -std=c++0x\n"
<< "else ifeq ($(CXX), clang++)\n"
<< " override CXXFLAGS += -std=c++0x\n"
<< "else ifeq ($(CXX), c++)\n"
<< " ifeq ($(shell uname -s), Darwin)\n"
<< " override CXXFLAGS += -std=c++0x\n"
<< " endif\n"
<< "endif\n"
<< "\n";
fout << "ifeq ($(HAVE_RULES),yes)\n"
<< " override CXXFLAGS += -DHAVE_RULES -DTIXML_USE_STL $(shell pcre-config --cflags)\n"
<< " ifdef LIBS\n"
<< " LIBS += $(shell pcre-config --libs)\n"
<< " else\n"
<< " LIBS=$(shell pcre-config --libs)\n"
<< " endif\n"
<< "endif\n\n";
makeConditionalVariable(fout, "PREFIX", "/usr");
makeConditionalVariable(fout, "INCLUDE_FOR_LIB", "-Ilib -Iexternals/simplecpp -Iexternals/tinyxml");
makeConditionalVariable(fout, "INCLUDE_FOR_CLI", "-Ilib -Iexternals/simplecpp -Iexternals/tinyxml");
makeConditionalVariable(fout, "INCLUDE_FOR_TEST", "-Ilib -Icli -Iexternals/simplecpp -Iexternals/tinyxml");
fout << "BIN=$(DESTDIR)$(PREFIX)/bin\n\n";
fout << "# For 'make man': sudo apt-get install xsltproc docbook-xsl docbook-xml on Linux\n";
fout << "DB2MAN?=/usr/share/sgml/docbook/stylesheet/xsl/nwalsh/manpages/docbook.xsl\n";
fout << "XP=xsltproc -''-nonet -''-param man.charmap.use.subset \"0\"\n";
fout << "MAN_SOURCE=man/cppcheck.1.xml\n\n";
fout << "\n###### Object Files\n\n";
fout << "LIBOBJ = " << objfile(libfiles[0]);
for (size_t i = 1; i < libfiles.size(); ++i)
fout << " \\\n" << std::string(14, ' ') << objfile(libfiles[i]);
fout << "\n\n";
fout << "EXTOBJ = " << objfile(extfiles[0]);
for (size_t i = 1; i < extfiles.size(); ++i)
fout << " \\\n" << std::string(14, ' ') << objfile(extfiles[i]);
fout << "\n\n";
fout << "CLIOBJ = " << objfile(clifiles[0]);
for (size_t i = 1; i < clifiles.size(); ++i)
fout << " \\\n" << std::string(14, ' ') << objfile(clifiles[i]);
fout << "\n\n";
fout << "TESTOBJ = " << objfile(testfiles[0]);
for (size_t i = 1; i < testfiles.size(); ++i)
fout << " \\\n" << std::string(14, ' ') << objfile(testfiles[i]);
fout << "\n\n";
fout << ".PHONY: run-dmake\n\n";
fout << "\n###### Targets\n\n";
fout << "cppcheck: $(LIBOBJ) $(CLIOBJ) $(EXTOBJ)\n";
fout << "\t$(CXX) $(CPPFLAGS) $(CXXFLAGS) -o cppcheck $(CLIOBJ) $(LIBOBJ) $(EXTOBJ) $(LIBS) $(LDFLAGS) $(RDYNAMIC)\n\n";
fout << "all:\tcppcheck testrunner\n\n";
fout << "testrunner: $(TESTOBJ) $(LIBOBJ) $(EXTOBJ) cli/threadexecutor.o cli/cmdlineparser.o cli/cppcheckexecutor.o cli/filelister.o cli/pathmatch.o\n";
fout << "\t$(CXX) $(CPPFLAGS) $(CXXFLAGS) -o testrunner $(TESTOBJ) $(LIBOBJ) cli/threadexecutor.o cli/cppcheckexecutor.o cli/cmdlineparser.o cli/filelister.o cli/pathmatch.o $(EXTOBJ) $(LIBS) $(LDFLAGS) $(RDYNAMIC)\n\n";
fout << "test:\tall\n";
fout << "\t./testrunner\n\n";
fout << "check:\tall\n";
fout << "\t./testrunner -g -q\n\n";
fout << "checkcfg:\tcppcheck\n";
fout << "\t./test/cfg/runtests.sh\n\n";
fout << "dmake:\ttools/dmake.o cli/filelister.o cli/pathmatch.o lib/path.o\n";
fout << "\t$(CXX) $(CXXFLAGS) -o dmake tools/dmake.o cli/filelister.o cli/pathmatch.o lib/path.o -Ilib $(LDFLAGS)\n\n";
fout << "run-dmake: dmake\n";
fout << "\t./dmake\n\n";
fout << "reduce:\ttools/reduce.o $(LIBOBJ) $(EXTOBJ)\n";
fout << "\t$(CXX) $(CPPFLAGS) $(CXXFLAGS) -g -o reduce tools/reduce.o $(INCLUDE_FOR_LIB) $(LIBOBJ) $(LIBS) $(EXTOBJ) $(LDFLAGS) $(RDYNAMIC)\n\n";
fout << "clean:\n";
fout << "\trm -f build/*.o lib/*.o cli/*.o test/*.o tools/*.o externals/*/*.o testrunner reduce dmake cppcheck cppcheck.1\n\n";
fout << "man:\tman/cppcheck.1\n\n";
fout << "man/cppcheck.1:\t$(MAN_SOURCE)\n\n";
fout << "\t$(XP) $(DB2MAN) $(MAN_SOURCE)\n\n";
fout << "tags:\n";
fout << "\tctags -R --exclude=doxyoutput --exclude=test/cfg cli externals gui lib test\n\n";
fout << "install: cppcheck\n";
fout << "\tinstall -d ${BIN}\n";
fout << "\tinstall cppcheck ${BIN}\n";
fout << "\tinstall addons/*.py ${BIN}\n";
fout << "\tinstall addons/*/*.py ${BIN}\n";
fout << "\tinstall htmlreport/cppcheck-htmlreport ${BIN}\n";
fout << "ifdef CFGDIR \n";
fout << "\tinstall -d ${DESTDIR}${CFGDIR}\n";
fout << "\tinstall -m 644 cfg/* ${DESTDIR}${CFGDIR}\n";
fout << "endif\n\n";
fout << "\n###### Build\n\n";
compilefiles(fout, libfiles, "${INCLUDE_FOR_LIB}");
compilefiles(fout, clifiles, "${INCLUDE_FOR_CLI}");
compilefiles(fout, testfiles, "${INCLUDE_FOR_TEST}");
compilefiles(fout, extfiles, "");
compilefiles(fout, toolsfiles, "${INCLUDE_FOR_LIB}");
return 0;
}
void CProteinInference::_Score_Normalization(
const map<string, vector<SPECTRAINFO> > & HaveToInterData_peptide_spec)
{
map<string, vector<SPECTRAINFO> > peptide_spec = HaveToInterData_peptide_spec;
/*同一个肽段，可能来自不同的引擎，可能来自同一个引擎
*
*/
double Max[20] =
{ -1.0e100, -1.0e100, -1.0e100, -1.0e100, -1.0e100, -1.0e100, -1.0e100, -1.0e100, -1.0e100,
-1.0e100, -1.0e100, -1.0e100, -1.0e100, -1.0e100, -1.0e100 };
double Min[20] =
{ 1.0e100, 1.0e100, 1.0e100, 1.0e100, 1.0e100, 1.0e100, 1.0e100, 1.0e100, 1.0e100, 1.0e100,
1.0e100, 1.0e100, 1.0e100, 1.0e100, 1.0e100 };
map<string, vector<pair<double, int> > > Peptide_Score_Engine;//记录某个肽段在各个搜索引擎下的分数
for (map<string, vector<SPECTRAINFO> >::iterator it = peptide_spec.begin(); it
!= peptide_spec.end(); it++)
{
vector<pair<double, int> > vectorTemp;
for (size_t t = 0; t < it->second.size(); t++)
{
CMatchSpectraInfo SpectraTemp;
ReadSingeSpectraFisrtPep(it->second[t].first, SpectraTemp);
pair<double, int> pairTemp;
pairTemp.first = SpectraTemp.m_vPeptides[0].m_vlfScores[0];
pairTemp.second = SpectraTemp.m_nDataSetID;
if (pairTemp.first > Max[pairTemp.second])
Max[pairTemp.second] = pairTemp.first;
if (pairTemp.first < Min[pairTemp.second])
Min[pairTemp.second] = pairTemp.first;
vectorTemp.push_back(pairTemp);
}
Peptide_Score_Engine[it->first] = vectorTemp;
}
double sum[20] =
{ 0 };
for (map<string, vector<pair<double, int> > >::iterator it = Peptide_Score_Engine.begin(); it
!= Peptide_Score_Engine.end(); it++)
{
for (size_t t = 0; t < it->second.size(); t++)
{
double tmp = (it->second[t].first - Min[it->second[t].second])
/ (Max[it->second[t].second] - Min[it->second[t].second]);
sum[it->second[t].second] += tmp;
it->second[t].first = tmp;
}
}
for (map<string, vector<pair<double, int> > >::iterator it = Peptide_Score_Engine.begin(); it
!= Peptide_Score_Engine.end(); it++)
{
for (size_t t = 0; t < it->second.size(); t++)
{
it->second[t].first = it->second[t].first / sum[it->second[t].second];
}
}
for (map<string, vector<pair<double, int> > >::iterator it = Peptide_Score_Engine.begin(); it
!= Peptide_Score_Engine.end(); it++)
{
double score = 1.0;
for (size_t t = 0; t < it->second.size(); t++)
{
score *= it->second[t].first;
}
score = pow(score, 1.0 / it->second.size());
peptide_score[it->first] = score;
/*这里的公式还得再讨论，暂时参考
* Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines
*/
}
double max = -1.0e100, min = 1.0e100;
for (map<string, double>::iterator it = peptide_score.begin(); it != peptide_score.end(); it++)
{
if (it->second > max)
max = it->second;
if (it->second < min)
min = it->second;
}
ofstream fout1("peptide_score1.txt");
double sum_2 = 0;
for (map<string, double>::iterator it = peptide_score.begin(); it != peptide_score.end(); it++)
{
fout1 << it->first << " " << it->second << endl;
if (it->second > 0.1)
fout1 << endl;
sum_2 += it->second;
}
fout1 << sum_2 << " " << sum_2 / peptide_score.size() << endl;
fout1.close();
double sum_score = 0.0;
for (map<string, double>::iterator it = peptide_score.begin(); it != peptide_score.end(); it++)
{
it->second = (it->second - min) / (max - min);
sum_score += it->second;
}
for (map<string, double>::iterator it = peptide_score.begin(); it != peptide_score.end(); it++)
{
it->second /= sum_score;
}
ofstream fout("peptide_score.txt");
double sum_1 = 0;
for (map<string, double>::iterator it = peptide_score.begin(); it != peptide_score.end(); it++)
{
fout << it->first << " " << it->second << endl;
if (it->second > 0.1)
fout << endl;
sum_1 += it->second;
}
fout << sum_1 << " " << sum_1 / peptide_score.size() << endl;
fout.close();
}
void tracking(string thestring){
//string thestring = "Position_REF2X_42_48";
string txtfilename = thestring + ".txt";
string shiftHead = "RotationBack_shiftParameters_";
string rotateHead = "RotationBack_angles_";
string residualHead = "RotationBack_residuals_";
string ResidualRHead="RotationBack_Residual_";
string chi2Head = "ResolutionChi2Angle_";
string foutname = shiftHead+thestring+"_exclusive.txt";
string fout1name = residualHead+thestring+"_exclusive.txt";
string foutchi2name = chi2Head + thestring + "_exclusive.txt";
string foutRotationName = rotateHead + thestring + "_exclusive.txt";
fstream fin(txtfilename.c_str(),ios::in);
if(!fin){cout<<"file not read"<<endl; return;}
else cout<<"processing "<<txtfilename<<endl;
fstream fout(foutname.c_str(),ios::out);
fstream fout1(fout1name.c_str(),ios::out);
fstream fout2(foutRotationName.c_str(),ios::out);
fstream fout3(foutchi2name.c_str(),ios::out|ios::app);
double pREF2X=0.0, pREF2Y=0.0;
double pREF3X=0.0, pREF3Y=0.0;
double pUVA3X=0.0, pUVA3Y=0.0;
double pREF1X=0.0, pREF1Y=0.0;
//double pZZ1=0.0, pZZ2=0.0;
//double pEta5=0.0;
vector<double> vpREF2X; vector<double> vpREF2Y;
vector<double> vpREF3X; vector<double> vpREF3Y;
vector<double> vpUVA3X; vector<double> vpUVA3Y;
vector<double> vpREF1X; vector<double> vpREF1Y;
//vector<double> vpZZ1; vector<double> vpZZ2;
//vector<double> vpEta5;
Int_t nbLines=0;
while(fin>>pREF2X>>pREF2Y>>pREF3X>>pREF3Y>>pUVA3X>>pUVA3Y>>pREF1X>>pREF1Y/*>>pEta5*/){
vpREF2X.push_back(pREF2X); vpREF2Y.push_back(pREF2Y); vpREF3X.push_back(pREF3X); vpREF3Y.push_back(pREF3Y);
vpUVA3X.push_back(pUVA3X); vpUVA3Y.push_back(pUVA3Y); vpREF1X.push_back(pREF1X); vpREF1Y.push_back(pREF1Y);
//vpZZ1.push_back(pZZ1); vpZZ2.push_back(pZZ2);
//vpEta5.push_back(pEta5);
nbLines++;
}
fin.close();
/*
REF2X:
[-30,-20]: -22.98, 1.089, -28.29, -3.209, -37.22, 14.88, -46.62, -2.411, 29.84
[-20,-15]: -17.07, 0.4154, -22.27, -3.92, -31.12, 14.55, -40.55, -2.637, 29.48
*/
/* coarse alignment parameters
double shiREF2X=10.72, shiREF2Y=1.048;
double shiREF3X=6.162, shiREF3Y=-3.395;
double shiUVA3X=-1.489, shiUVA3Y=15.05;
double shiREF1X=-10.46, shiREF1Y=-1.496;
//double shiZZ1=0, shiZZ2=0;
double shiEta5=29.5;
*/
//fine alignment parameters
/*
double shiREF2X=3.656, shiREF2Y=1.865;
double shiREF3X=-1.781, shiREF3Y=-2.415;
double shiUVA3X=-8.389, shiUVA3Y=15.779;
double shiREF1X=-17.504, shiREF1Y=-0.844;
double aREF3REF2=0.009499;
double aUVA3REF2=-0.004731;
double aREF1REF2=-0.02473;
*/
double shiREF2X=12.26791212, shiREF2Y=2.02708225;
double shiREF3X=7.4824985, shiREF3Y=-2.35562;
double shiUVA3X=-0.7097, shiUVA3Y=15.75778;
double shiREF1X=-9.92822, shiREF1Y=-0.68756;
double shiEta5=29.47;
double aREF3REF2=-0.02;//0.0037;//0.01254602;//start angle: 0.01197;
double aUVA3REF2=-0.004971;//-0.017;//0.00203396;//0.02807;//start angle: 0.01102
double aREF1REF2=-0.02446;//-0.0486;//-0.0171;//start angle: 0.008273;
//double aEta5REF2;
double tempREF2X, tempREF2Y, tempREF3X, tempREF3Y, tempUVA3X, tempUVA3Y, tempREF1X, tempREF1Y, tempEta5;
double meanREF2X=0.0, meanREF2Y=0.0;
double meanREF3X=0.0, meanREF3Y=0.0;
double meanUVA3X=0.0, meanUVA3Y=0.0;
double meanREF1X=0.0, meanREF1Y=0.0;
//double meanZZ1=0.0, meanZZ2=0.0;
//double meanEta5=0;
double meanAngleREF3=0.0;
double meanAngleUVA3=0.0;
double meanAngleREF1=0.0;
//double meanAngleEta5=0.0;
double sigmaREF2X=0.0,sigmaREF2Y=0.0,sigmaREF3X=0.0,sigmaREF3Y=0.0,sigmaUVA3X=0.0,sigmaUVA3Y=0.0,sigmaREF1X=0.0,sigmaREF1Y=0.0;
double totalAngleREF3=0.0, totalAngleUVA3=0.0, totalAngleREF1=0.0;
double meanXChi2=0.0,meanYChi2=0.0; // chi square for tracks.
Int_t iterNb=0;
while(1){
char rootfile[50]; sprintf(rootfile,"_iter%i_exclusive.root",iterNb);
string outputrootname=ResidualRHead+thestring+rootfile;
TFile* f = new TFile(outputrootname.c_str(),"recreate");
iterNb++;
char name2X[15];sprintf(name2X,"posREF2X_%i",iterNb); char name2Y[15];sprintf(name2Y,"posREF2Y_%i",iterNb);
char name3X[15];sprintf(name3X,"posREF3X_%i",iterNb); char name3Y[15];sprintf(name3Y,"posREF3Y_%i",iterNb);
char nameu3X[15];sprintf(nameu3X,"posUVA3X_%i",iterNb);char nameu3Y[15];sprintf(nameu3Y,"posUVA3Y_%i",iterNb);
char name1X[15];sprintf(name1X,"posREF1X_%i",iterNb); char name1Y[15];sprintf(name1Y,"posREF1Y_%i",iterNb);
//char nameZZ1[15];sprintf(nameZZ1,"pos10cmZZ1_%i",iterNb); char nameZZ2[15];sprintf(nameZZ2,"pos10cmZZ2_%i",iterNb);
//char nameEta5[15];sprintf(nameEta5,"posEta5_%i",iterNb);
TH1F* hpREF2X = new TH1F(name2X,"",500,-50,50); hpREF2X->SetXTitle("mm"); hpREF2X->SetYTitle("Frequency");hpREF2X->SetLabelSize(0.045,"XY");hpREF2X->SetTitleSize(0.045,"XY");
TH1F* hpREF2Y = new TH1F(name2Y,"",500,-50,50); hpREF2Y->SetXTitle("mm"); hpREF2Y->SetYTitle("Frequency");hpREF2Y->SetLabelSize(0.045,"XY");hpREF2Y->SetTitleSize(0.045,"XY");
TH1F* hpREF3X = new TH1F(name3X,"",500,-50,50); hpREF3X->SetXTitle("mm"); hpREF3X->SetYTitle("Frequency");hpREF3X->SetLabelSize(0.045,"XY");hpREF3X->SetTitleSize(0.045,"XY");
TH1F* hpREF3Y = new TH1F(name3Y,"",500,-50,50); hpREF3Y->SetXTitle("mm"); hpREF3Y->SetYTitle("Frequency");hpREF3Y->SetLabelSize(0.045,"XY");hpREF3Y->SetTitleSize(0.045,"XY");
TH1F* hpUVA3X = new TH1F(nameu3X,"",500,-50,50); hpUVA3X->SetXTitle("mm"); hpUVA3X->SetYTitle("Frequency");hpUVA3X->SetLabelSize(0.045,"XY");hpUVA3X->SetTitleSize(0.045,"XY");
TH1F* hpUVA3Y = new TH1F(nameu3Y,"",500,-50,50); hpUVA3Y->SetXTitle("mm"); hpUVA3Y->SetYTitle("Frequency");hpUVA3Y->SetLabelSize(0.045,"XY");hpUVA3Y->SetTitleSize(0.045,"XY");
TH1F* hpREF1X = new TH1F(name1X,"",500,-50,50); hpREF1X->SetXTitle("mm"); hpREF1X->SetYTitle("Frequency");hpREF1X->SetLabelSize(0.045,"XY");hpREF1X->SetTitleSize(0.045,"XY");
TH1F* hpREF1Y = new TH1F(name1Y,"",500,-50,50); hpREF1Y->SetXTitle("mm"); hpREF1Y->SetYTitle("Frequency");hpREF1Y->SetLabelSize(0.045,"XY");hpREF1Y->SetTitleSize(0.045,"XY");
//TH1F* hpZZ1 = new TH1F(nameZZ1,"",600,-150,150); hpZZ1->SetXTitle("mm"); hpZZ1->SetYTitle("Frequency"); hpZZ1->SetLabelSize(0.045,"XY");hpZZ1->SetTitleSize(0.045,"XY");
//TH1F* hpZZ2 = new TH1F(nameZZ2,"",600,-150,150); hpZZ2->SetXTitle("mm"); hpZZ2->SetYTitle("Frequency"); hpZZ2->SetLabelSize(0.045,"XY");hpZZ2->SetTitleSize(0.045,"XY");
//TH1F* hpEta5 = new TH1F(nameEta5,"",600,-150,150); hpEta5->SetXTitle("mm"); hpEta5->SetYTitle("Frequency"); hpEta5->SetLabelSize(0.045,"XY");hpEta5->SetTitleSize(0.045,"XY");
char nameRes2X[20];sprintf(nameRes2X,"residualREF2X_%i",iterNb);char nameRes2Y[20];sprintf(nameRes2Y,"residualREF2Y_%i",iterNb);
char nameRes3X[20];sprintf(nameRes3X,"residualREF3X_%i",iterNb);char nameRes3Y[20];sprintf(nameRes3Y,"residualREF3Y_%i",iterNb);
char nameResu3X[20];sprintf(nameResu3X,"residualUVA3X_%i",iterNb);char nameResu3Y[20];sprintf(nameResu3Y,"residualUVA3Y_%i",iterNb);
char nameRes1X[20];sprintf(nameRes1X,"residualREF1X_%i",iterNb);char nameRes1Y[20];sprintf(nameRes1Y,"residualREF1Y_%i",iterNb);
//char nameResZZ1[20];sprintf(nameResZZ1,"residualZZ1_%i",iterNb);char nameResZZ2[20];sprintf(nameResZZ2,"residualZZ2_%i",iterNb);
//char nameResEta5[20];sprintf(nameResEta5,"residualEta5_%i",iterNb);
TH1F* residualREF2X = new TH1F(nameRes2X,"",200,-2,2); residualREF2X->SetXTitle("Residual [mm]"); residualREF2X->SetYTitle("Frequency");residualREF2X->SetLabelSize(0.045,"XY");residualREF2X->SetTitleSize(0.045,"XY");
TH1F* residualREF2Y = new TH1F(nameRes2Y,"",200,-2,2); residualREF2Y->SetXTitle("Residual [mm]"); residualREF2Y->SetYTitle("Frequency");residualREF2Y->SetLabelSize(0.045,"XY");residualREF2Y->SetTitleSize(0.045,"XY");
TH1F* residualREF3X = new TH1F(nameRes3X,"",200,-2,2); residualREF3X->SetXTitle("Residual [mm]"); residualREF3X->SetYTitle("Frequency");residualREF3X->SetLabelSize(0.045,"XY");residualREF3X->SetTitleSize(0.045,"XY");
TH1F* residualREF3Y = new TH1F(nameRes3Y,"",200,-2,2); residualREF3Y->SetXTitle("Residual [mm]"); residualREF3Y->SetYTitle("Frequency");residualREF3Y->SetLabelSize(0.045,"XY");residualREF3Y->SetTitleSize(0.045,"XY");
TH1F* residualUVA3X = new TH1F(nameResu3X,"",200,-2,2); residualUVA3X->SetXTitle("Residual [mm]"); residualUVA3X->SetYTitle("Frequency");residualUVA3X->SetLabelSize(0.045,"XY");residualUVA3X->SetTitleSize(0.045,"XY");
TH1F* residualUVA3Y = new TH1F(nameResu3Y,"",200,-2,2); residualUVA3Y->SetXTitle("Residual [mm]"); residualUVA3Y->SetYTitle("Frequency");residualUVA3Y->SetLabelSize(0.045,"XY");residualUVA3Y->SetTitleSize(0.045,"XY");
TH1F* residualREF1X = new TH1F(nameRes1X,"",200,-2,2); residualREF1X->SetXTitle("mm"); residualREF1X->SetYTitle("Frequency");residualREF1X->SetLabelSize(0.045,"XY");residualREF1X->SetTitleSize(0.045,"XY");
TH1F* residualREF1Y = new TH1F(nameRes1Y,"",200,-2,2); residualREF1Y->SetXTitle("mm"); residualREF1Y->SetYTitle("Frequency");residualREF1Y->SetLabelSize(0.045,"XY");residualREF1Y->SetTitleSize(0.045,"XY");
//TH1F* residualZZ1 = new TH1F(nameResZZ1,"",320,-16,16); residualZZ1->SetXTitle("Residual [mm]"); residualZZ1->SetYTitle("Frequency");residualZZ1->SetLabelSize(0.045,"XY");residualZZ1->SetTitleSize(0.045,"XY");
//TH1F* residualZZ2 = new TH1F(nameResZZ2,"",320,-16,16); residualZZ2->SetXTitle("Residual [mm]"); residualZZ2->SetYTitle("Frequency");residualZZ2->SetLabelSize(0.045,"XY");residualZZ2->SetTitleSize(0.045,"XY");
//TH1F* residualEta5 = new TH1F(nameResEta5,"",320,-16,16); residualEta5->SetXTitle("Residual [mm]"); residualEta5->SetYTitle("Frequency");residualEta5->SetLabelSize(0.045,"XY");residualEta5->SetTitleSize(0.045,"XY");
/*
char nameDxREF3X[20]; sprintf(nameDxREF3X,"REF3X_REF2X_%i",iterNb); char nameDyREF3Y[20]; sprintf(nameDyREF3Y,"REF3Y_REF2Y_%i",iterNb);
char nameDxUVA3X[20]; sprintf(nameDxUVA3X,"UVA3X_REF2X_%i",iterNb); char nameDyUVA3Y[20]; sprintf(nameDyUVA3Y,"UVA3Y_REF2Y_%i",iterNb);
char nameDxREF1X[20]; sprintf(nameDxREF1X,"REF1X_REF2X_%i",iterNb); char nameDyREF1Y[20]; sprintf(nameDyREF1Y,"REF1Y_REF2Y_%i",iterNb);
TH1F* dxREF3X = new TH1F(nameDxREF3X,"",400,-4,4); dxREF3X->SetXTitle("Delta_X_REF3X_REF2X [mm]"); dxREF3X->SetYTitle("Frequency");dxREF3X->SetLabelSize(0.045,"XY"); dxREF3X->SetTitleSize(0.045,"XY");
TH1F* dxUVA3X = new TH1F(nameDxUVA3X,"",400,-4,4); dxUVA3X->SetXTitle("Delta_X_UVA3X_REF2X [mm]"); dxUVA3X->SetYTitle("Frequency");dxUVA3X->SetLabelSize(0.045,"XY"); dxUVA3X->SetTitleSize(0.045,"XY");
TH1F* dxREF1X = new TH1F(nameDxREF1X,"",400,-4,4); dxREF1X->SetXTitle("Delta_X_REF1X_REF2X [mm]"); dxREF1X->SetYTitle("Frequency");dxREF1X->SetLabelSize(0.045,"XY"); dxREF1X->SetTitleSize(0.045,"XY");
TH1F* dyREF3Y = new TH1F(nameDyREF3Y,"",400,-4,4); dyREF3Y->SetXTitle("Delta_Y_REF3Y_REF2Y [mm]"); dyREF3Y->SetYTitle("Frequency");dyREF3Y->SetLabelSize(0.045,"XY"); dyREF3Y->SetTitleSize(0.045,"XY");
TH1F* dyUVA3Y = new TH1F(nameDyUVA3Y,"",400,-4,4); dyUVA3Y->SetXTitle("Delta_Y_UVA3Y_REF2Y [mm]"); dyUVA3Y->SetYTitle("Frequency");dyUVA3Y->SetLabelSize(0.045,"XY"); dyUVA3Y->SetTitleSize(0.045,"XY");
TH1F* dyREF1Y = new TH1F(nameDyREF1Y,"",400,-4,4); dyREF1Y->SetXTitle("Delta_Y_REF1Y_REF2Y [mm]"); dyREF1Y->SetYTitle("Frequency");dyREF1Y->SetLabelSize(0.045,"XY"); dyREF1Y->SetTitleSize(0.045,"XY");
char nameDxUVA3REF3[20]; sprintf(nameDxUVA3REF3,"UVA3X_REF3X_%i",iterNb);
char nameDxREF1UVA3[20]; sprintf(nameDxREF1UVA3,"REF1X_UVA3X_%i",iterNb);
char nameDxREF1REF3[20]; sprintf(nameDxREF1REF3,"REF1X_REF3X_%i",iterNb);
char nameDyUVA3REF3[20]; sprintf(nameDyUVA3REF3,"UVA3Y_REF3Y_%i",iterNb);
char nameDyREF1UVA3[20]; sprintf(nameDyREF1UVA3,"REF1Y_UVA3Y_%i",iterNb);
char nameDyREF1REF3[20]; sprintf(nameDyREF1REF3,"REF1Y_REF3Y_%i",iterNb);
TH1F* dxUVA3REF3 = new TH1F(nameDxUVA3REF3,"",400,-4,4); dxUVA3REF3->SetXTitle("Delta_X_UVA3X_REF3X [mm]"); dxUVA3REF3->SetYTitle("Frequency"); dxUVA3REF3->SetLabelSize(0.045,"XY"); dxUVA3REF3->SetTitleSize(0.045,"XY");
TH1F* dxREF1UVA3 = new TH1F(nameDxREF1UVA3,"",400,-4,4); dxREF1UVA3->SetXTitle("Delta_X_REF1X_UVA3X [mm]"); dxREF1UVA3->SetYTitle("Frequency"); dxREF1UVA3->SetLabelSize(0.045,"XY"); dxUVA3REF3->SetTitleSize(0.045,"XY");
TH1F* dxREF1REF3 = new TH1F(nameDxREF1REF3,"",400,-4,4); dxREF1REF3->SetXTitle("Delta_X_REF1X_REF3X [mm]"); dxREF1REF3->SetYTitle("Frequency"); dxREF1REF3->SetLabelSize(0.045,"XY"); dxREF1REF3->SetTitleSize(0.045,"XY");
TH1F* dyUVA3REF3 = new TH1F(nameDyUVA3REF3,"",400,-4,4); dyUVA3REF3->SetXTitle("Delta_Y_UVA3Y_REF3Y [mm]"); dyUVA3REF3->SetYTitle("Frequency"); dyUVA3REF3->SetLabelSize(0.045,"XY"); dyUVA3REF3->SetTitleSize(0.045,"XY");
TH1F* dyREF1UVA3 = new TH1F(nameDyREF1UVA3,"",400,-4,4); dyREF1UVA3->SetXTitle("Delta_Y_REF1Y_UVA3Y [mm]"); dyREF1UVA3->SetYTitle("Frequency"); dyREF1UVA3->SetLabelSize(0.045,"XY"); dyREF1UVA3->SetTitleSize(0.045,"XY");
TH1F* dyREF1REF3 = new TH1F(nameDyREF1REF3,"",400,-4,4); dyREF1REF3->SetXTitle("Delta_Y_REF1Y_REF3Y [mm]"); dyREF1REF3->SetYTitle("Frequency"); dyREF1REF3->SetLabelSize(0.045,"XY"); dyREF1REF3->SetTitleSize(0.045,"XY");
*/
TH1F* angleREF3 = new TH1F("angleREF3","Rotation angle distribution of REF3 and REF2",1000,-0.5,0.5); angleREF3->SetXTitle("Angle [radian]"); angleREF3->SetYTitle("Frequency");
//TH1F* angleREF3_2 = new TH1F("angleREF3","Get From Delta_y",2000,-0.5,3.5); angleREF3_2->SetXTitle("Rotation angle of ERF3 and REF2 [radian]"); angleREF3_2->SetYTitle("Frequency");
TH1F* angleUVA3 = new TH1F("angleUVA3","Rotation angle distribution of UVA3 and REF2",1000,-0.5,0.5); angleUVA3->SetXTitle("Angle [radian]"); angleUVA3->SetYTitle("Frequency");
//TH1F* angleUVA3_2 = new TH1F("angleUVA3_2","Get From Delta_y",2000,-0.5,3.5); angleUVA3_2->SetXTitle("Rotation angle of UVA3 and REF2 [radian]"); angleUVA3_2->SetYTitle("Frequency");
TH1F* angleREF1 = new TH1F("angleREF1","Rotation angle distribution of REF1 and REF2",1000,-0.5,0.5); angleREF1->SetXTitle("Angle [radian]"); angleREF1->SetYTitle("Frequency");
//TH1F* angleREF1_2 = new TH1F("angleREF1_2","Get From Delta_y",2000,-0.5,3.5); angleREF1_2->SetXTitle("Rotation angle of ERF1 and REF2 [radian]"); angleREF1_2->SetYTitle("Frequency");
//TH1F* angleEta5 = new TH1F("angleEta5","Rotation Eta5 and REF2",1000,-0.5,0.5);
//delta-y up: 200,-4,4
//TH1F* deltayZZ = new TH1F("deltaY","",200,-4,4); deltayZZ->SetXTitle("Position difference [mm]");deltayZZ->SetYTitle("Frequency");
//deltayZZ->SetLabelSize(0.045,"XY");deltayZZ->SetTitleSize(0.045,"XY");
//cout<<"shift: "<<shiREF2X<<"\t"<<shiREF2Y<<"\t"<<shiREF3X<<"\t"<<shiREF3Y<<"\t"<<shiUVA3X<<"\t"<<shiUVA3Y<<"\t"<<shiREF1X<<"\t"<<shiREF1Y<<endl;
TH1F* xTrackChi2 = new TH1F("XTrackChi2","Chi square of tracks in X projection",1000,0,0.2); xTrackChi2->SetXTitle("#chi^{2} of track in X"); xTrackChi2->SetYTitle("Frequency");
xTrackChi2->SetTitleSize(0.04,"XY"); xTrackChi2->SetLabelSize(0.04,"XY");
TH1F* yTrackChi2 = new TH1F("YTrackChi2","Chi square of tracks in Y projection",1000,0,0.2); yTrackChi2->SetXTitle("#chi^{2} of track in Y"); yTrackChi2->SetYTitle("Frequency");
yTrackChi2->SetTitleSize(0.04,"XY"); yTrackChi2->SetLabelSize(0.04,"XY");
fout<<"shift: "<<shiREF2X<<"\t"<<shiREF2Y<<"\t"<<shiREF3X<<"\t"<<shiREF3Y<<"\t"<<shiUVA3X<<"\t"<<shiUVA3Y<<"\t"<<shiREF1X<<"\t"<<shiREF1Y<<endl;
fout2<<"rotation: "<<aREF3REF2<<"\t"<<aUVA3REF2<<"\t"<<aREF1REF2<<endl;
int nnnn=0;
for(Int_t i=0;i<vpREF2X.size();i++){
//shift
vpREF2X[i] = vpREF2X[i] - shiREF2X; vpREF2Y[i] = vpREF2Y[i] - shiREF2Y;
vpREF3X[i] = vpREF3X[i] - shiREF3X; vpREF3Y[i] = vpREF3Y[i] - shiREF3Y;
vpUVA3X[i] = vpUVA3X[i] - shiUVA3X; vpUVA3Y[i] = vpUVA3Y[i] - shiUVA3Y;
vpREF1X[i] = vpREF1X[i] - shiREF1X; vpREF1Y[i] = vpREF1Y[i] - shiREF1Y;
// vpZZ1[i] = vpZZ1[i] - shiZZ1; vpZZ2[i] = vpZZ2[i] - shiZZ2;
//vpEta5[i] = vpEta5[i] - shiEta5;
tempREF2X=vpREF2X[i]; tempREF2Y=vpREF2Y[i]; tempREF3X=vpREF3X[i]; tempREF3Y=vpREF3Y[i];
tempUVA3X=vpUVA3X[i]; tempUVA3Y=vpUVA3Y[i]; tempREF1X=vpREF1X[i]; tempREF1Y=vpREF1Y[i];
//tempEta5=vpEta5[i];
//rotate back
vpREF3X[i]=tempREF3X*cos(aREF3REF2)-tempREF3Y*sin(aREF3REF2);
vpREF3Y[i]=tempREF3X*sin(aREF3REF2)+tempREF3Y*cos(aREF3REF2);
vpUVA3X[i]=tempUVA3X*cos(aUVA3REF2)-tempUVA3Y*sin(aUVA3REF2);
vpUVA3Y[i]=tempUVA3X*sin(aUVA3REF2)+tempUVA3Y*cos(aUVA3REF2);
vpREF1X[i]=tempREF1X*cos(aREF1REF2)-tempREF1Y*sin(aREF1REF2);
vpREF1Y[i]=tempREF1X*sin(aREF1REF2)+tempREF1Y*cos(aREF1REF2);
//vpEta5[i]=tempREF2X*sin(aEta5REF2)+tempEta5*cos(aEta5REF2);
hpREF2X->Fill(vpREF2X[i]); hpREF2Y->Fill(vpREF2Y[i]);
hpREF3X->Fill(vpREF3X[i]); hpREF3Y->Fill(vpREF3Y[i]);
hpUVA3X->Fill(vpUVA3X[i]); hpUVA3Y->Fill(vpUVA3Y[i]);
hpREF1X->Fill(vpREF1X[i]); hpREF1Y->Fill(vpREF1Y[i]);
//hpZZ1->Fill(vpZZ1[i]); hpZZ2->Fill(vpZZ2[i]);
//hpEta5->Fill(vpEta5[i]); //cout<<vpEta5[i]<<endl;
/*
dxREF3X->Fill(vpREF3X[i]-vpREF2X[i]); dyREF3Y->Fill(vpREF3Y[i]-vpREF2Y[i]);
dxUVA3X->Fill(vpUVA3X[i]-vpREF2X[i]); dyUVA3Y->Fill(vpUVA3Y[i]-vpREF2Y[i]);
dxREF1X->Fill(vpREF1X[i]-vpREF2X[i]); dyREF1Y->Fill(vpREF1Y[i]-vpREF2Y[i]);
dxUVA3REF3->Fill(vpUVA3X[i]-vpREF3X[i]); dyUVA3REF3->Fill(vpUVA3Y[i]-vpREF3Y[i]);
dxREF1UVA3->Fill(vpREF1X[i]-vpUVA3X[i]); dyREF1UVA3->Fill(vpREF1Y[i]-vpUVA3Y[i]);
dxREF1REF3->Fill(vpREF1X[i]-vpREF3X[i]); dyREF1REF3->Fill(vpREF1Y[i]-vpREF3Y[i]);
*/
TGraph* g1 = new TGraph();
g1->SetPoint(0,0, vpREF2X[i]);
g1->SetPoint(1,1143.5,vpREF3X[i]);
g1->SetPoint(2,2686.5,vpUVA3X[i]);
g1->SetPoint(3,3169.5,vpREF1X[i]);
TF1* f1 = new TF1("line1","[0]+[1]*x",0,3200);
g1->Fit("line1","Q");
double intercept1 = f1->GetParameter(0);
double slope1 = f1->GetParameter(1);
double MeasuredREF2X = intercept1 + slope1*0.0;
double MeasuredREF3X = intercept1 + slope1*1143.5;
double MeasuredUVA3X = intercept1 + slope1*2686.5;
double MeasuredREF1X = intercept1 + slope1*3169.5;
residualREF2X->Fill(MeasuredREF2X-vpREF2X[i]);
residualREF3X->Fill(MeasuredREF3X-vpREF3X[i]);
residualUVA3X->Fill(MeasuredUVA3X-vpUVA3X[i]);
residualREF1X->Fill(MeasuredREF1X-vpREF1X[i]);
xTrackChi2->Fill(f1->GetChisquare());
//cout<<f1->GetChisquare()<<"\t";
delete f1; delete g1;
TGraph* g2 = new TGraph();
g2->SetPoint(0,0, vpREF2Y[i]);
g2->SetPoint(1,1143.5,vpREF3Y[i]);
// exclusive
g2->SetPoint(2,2686.5,vpUVA3Y[i]);
g2->SetPoint(3,3169.5,vpREF1Y[i]);
// inclusive
//g2->SetPoint(2,2305.5,vpZZ2[i]); //inclusive 1
//g2->SetPoint(2,2327.5,vpZZ1[i]); //inclusive 2
//g2->SetPoint(3,2686.5,vpUVA3Y[i]);
//g2->SetPoint(4,3169.5,vpREF1Y[i]);
//g2->SetPoint(3,3169.5,vpREF1Y[i]);
TF1* f2 = new TF1("line2","[0]+[1]*x",0,3200);
g2->Fit("line2","Q");
double intercept2 = f2->GetParameter(0);
double slope2 = f2->GetParameter(1);
double MeasuredREF2Y = intercept2 + slope2*0.0;
double MeasuredREF3Y = intercept2 + slope2*1143.5;
double MeasuredUVA3Y = intercept2 + slope2*2686.5;
double MeasuredREF1Y = intercept2 + slope2*3169.5;
//double MeasuredZZ1 = intercept2 + slope2*2327.5;
//double MeasuredZZ2 = intercept2 + slope2*2305.5;
//double MeasuredEta5 = intercept2 + slope2*2011.5;
residualREF2Y->Fill(MeasuredREF2Y-vpREF2Y[i]);
residualREF3Y->Fill(MeasuredREF3Y-vpREF3Y[i]);
residualUVA3Y->Fill(MeasuredUVA3Y-vpUVA3Y[i]);
residualREF1Y->Fill(MeasuredREF1Y-vpREF1Y[i]);
//residualZZ1->Fill(MeasuredZZ1-vpZZ1[i]);
//residualZZ2->Fill(MeasuredZZ2-vpZZ2[i]);
//residualEta5->Fill(MeasuredEta5-vpEta5[i]);
//deltayZZ->Fill(vpZZ1[i]-vpZZ2[i]);
yTrackChi2->Fill(f2->GetChisquare());
//cout<<f2->GetChisquare()<<endl;
delete f2; delete g2;
double cosineREF3 = CalculateCosTheta1(vpREF2X[i],vpREF2Y[i],vpREF3X[i],vpREF3Y[i]);
double cosineUVA3 = CalculateCosTheta1(vpREF2X[i],vpREF2Y[i],vpUVA3X[i],vpREF3Y[i]);
double cosineREF1 = CalculateCosTheta1(vpREF2X[i],vpREF2Y[i],vpREF1X[i],vpREF3Y[i]);
// double cosineEta5 = CalculateCosTheta1(vpREF2X[i],vpREF2Y[i],vpREF2X[i],vpEta5[i]);
angleREF3->Fill(cosineREF3); //angleREF3_2->Fill(cosineREF3_2);
angleUVA3->Fill(cosineUVA3); //angleUVA3_2->Fill(cosineUVA3_2);
angleREF1->Fill(cosineREF1); //angleREF1_2->Fill(cosineREF1_2);
//angleEta5->Fill(cosineEta5);
nnnn++;
//if(nnnn%1000==0) cout<<nnnn<<"......"<<endl;
//if(nnnn>1000) break;
} //for loop
//cout<<"after for loop"<<endl;
gStyle->SetOptFit(1111);
I2GFvalues myValues;
myValues = I2GFmainLoop(residualREF2X, 1, 10 , 1);
meanREF2X = myValues.mean; sigmaREF2X=myValues.sigma;
myValues = I2GFmainLoop(residualREF2Y, 1, 10 , 1);
meanREF2Y = myValues.mean; sigmaREF2Y=myValues.sigma;
myValues = I2GFmainLoop(residualREF3X, 1, 10 , 1);
meanREF3X = myValues.mean; sigmaREF3X=myValues.sigma;
myValues = I2GFmainLoop(residualREF3Y, 1, 10 , 1);
meanREF3Y = myValues.mean; sigmaREF3Y=myValues.sigma;
myValues = I2GFmainLoop(residualUVA3X, 1, 10 , 1);
meanUVA3X = myValues.mean; sigmaUVA3X=myValues.sigma;
myValues = I2GFmainLoop(residualUVA3Y, 1, 10 , 1);
meanUVA3Y = myValues.mean; sigmaUVA3Y=myValues.sigma;
myValues = I2GFmainLoop(residualREF1X, 1, 10 , 1);
meanREF1X = myValues.mean; sigmaREF1X=myValues.sigma;
myValues = I2GFmainLoop(residualREF1Y, 1, 10 , 1);
meanREF1Y = myValues.mean; sigmaREF1Y=myValues.sigma;
cout<<"residual mean: "<<meanREF2X<<"\t"<<meanREF2Y<<"\t"<<meanREF3X<<"\t"<<meanREF3Y<<"\t"<<meanUVA3X<<"\t"<<meanUVA3Y<<"\t"<<meanREF1X<<"\t"<<meanREF1Y<<endl;
//<<meanZZ1<<"\t"<<meanZZ2<<endl;
fout1<<"residual mean: "<<meanREF2X<<"\t"<<meanREF2Y<<"\t"<<meanREF3X<<"\t"<<meanREF3Y<<"\t"<<meanUVA3X<<"\t"<<meanUVA3Y<<"\t"<<meanREF1X<<"\t"<<meanREF1Y<<endl;
//<<meanZZ1<<"\t"<<meanZZ2<<endl;
/*
myValues = I2GFmainLoop(dxREF3X, 1, 10 , 1);
myValues = I2GFmainLoop(dxUVA3X, 1, 10 , 1);
myValues = I2GFmainLoop(dxREF1X, 1, 10 , 1);
myValues = I2GFmainLoop(dyREF3Y, 1, 10 , 1);
myValues = I2GFmainLoop(dyUVA3Y, 1, 10 , 1);
myValues = I2GFmainLoop(dyREF1Y, 1, 10 , 1);
myValues = I2GFmainLoop(dxUVA3REF3, 1, 10 , 1);
myValues = I2GFmainLoop(dxREF1UVA3, 1, 10 , 1);
myValues = I2GFmainLoop(dxREF1REF3, 1, 10 , 1);
myValues = I2GFmainLoop(dyUVA3REF3, 1, 10 , 1);
myValues = I2GFmainLoop(dyREF1UVA3, 1, 10 , 1);
myValues = I2GFmainLoop(dyREF1REF3, 1, 10 , 1);
*/
myValues = I2GFmainLoop(angleREF3, 1, 10 , 1);
meanAngleREF3=myValues.mean;
myValues = I2GFmainLoop(angleUVA3, 1, 10 , 1);
meanAngleUVA3=myValues.mean;
myValues = I2GFmainLoop(angleREF1, 1, 10 , 1);
meanAngleREF1=myValues.mean;
//maximum=angleEta5->GetMean(); rms=angleEta5->GetRMS(1); lRange=maximum-rms*0.7; hRange=maximum+rms*0.7;
//TF1* funAngleEta5=new TF1("funAngleEta5","gaus",lRange,hRange); angleEta5->Fit("funAngleEta5","RQ");
//meanAngleEta5=funAngleEta5->GetParameter(1);
//maximum=xTrackChi2->GetMean(); rms=xTrackChi2->GetRMS(1); lRange=maximum-rms*0.5; hRange=maximum+rms*0.5;
//TF1* funXTrackChi2=new TF1("funXTrackChi2","gaus",lRange,hRange); xTrackChi2->Fit("funXTrackChi2","RQ");
meanXChi2=xTrackChi2->GetMean();
//maximum=yTrackChi2->GetMean(); rms=yTrackChi2->GetRMS(1); lRange=maximum-rms*0.5; hRange=maximum+rms*0.5;
//TF1* funYTrackChi2=new TF1("funYTrackChi2","gaus",lRange,hRange); yTrackChi2->Fit("funYTrackChi2","RQ");
meanYChi2=yTrackChi2->GetMean();
totalAngleREF3 += aREF3REF2;
totalAngleUVA3 += aUVA3REF2;
totalAngleREF1 += aREF1REF2;
fout3<<sigmaREF2X<<"\t"<<sigmaREF2Y<<"\t"<<sigmaREF3X<<"\t"<<sigmaREF3Y<<"\t"<<sigmaUVA3X<<"\t"<<sigmaUVA3Y<<"\t"<<sigmaREF1X<<"\t"<<sigmaREF1Y<<"\t"<<totalAngleREF3<<"\t"<<totalAngleUVA3<<"\t"<<totalAngleREF1<<"\t"<<meanXChi2<<"\t"<<meanYChi2<<endl;
f->Write();
f->Close();
//delete funPosEta5; delete funPosREF1Y; delete funPosUVA3Y; delete funPosREF3Y; delete funPosREF2Y;
double factor = -0.2;
//shiREF2X = meanREF2X*factor; shiREF2Y = meanREF2Y*factor;
//shiREF3X = meanREF3X*factor; shiREF3Y = meanREF3Y*factor;
//shiUVA3X = meanUVA3X*factor; shiUVA3Y = meanUVA3Y*factor;
//shiREF1X = meanREF1X*factor; shiREF1Y = meanREF1Y*factor;
//shiZZ1 = meanZZ1*factor; shiZZ2 = meanZZ2*factor;
//shiEta5 = meanEta5*factor;
factor=0.2;
shiREF2X=0.0; shiREF2Y=0.0;
shiREF3X=0.0; shiREF3Y=0.0;
shiUVA3X=0.0; shiUVA3Y=0.0;
shiREF1X=0.0; shiREF1Y=0.0;
aREF3REF2 = 0.001 ;
aUVA3REF2 = 0.0;
aREF1REF2 = 0.0;
//aUVA3REF2 = meanAngleUVA3*factor;
//aREF1REF2 = meanAngleREF1*factor;
// aEta5REF2 = meanAngleEta5*factor;
// if(iterNb>0) break; // only cylce once.
//if((meanREF2X>=-0.001 && meanREF2X<=0.001) && (meanREF2Y>=-0.001 && meanREF2Y<=0.001))
// if((meanREF3X>=-0.001 && meanREF3X<=0.001) && (meanREF3Y>=-0.001 && meanREF3Y<=0.001))
// if((meanUVA3X>=-0.001 && meanUVA3X<=0.001) && (meanUVA3Y>=-0.001 && meanUVA3Y<=0.001))
// if((meanREF1X>=-0.001 && meanREF1X<=0.001) && (meanREF1Y>=-0.001 && meanREF1Y<=0.001) && meanEta5<=0.005)
//if(meanAngleREF3>=-0.001 && meanAngleREF3<=0.001 && meanAngleUVA3>=-0.001 && meanAngleUVA3<=0.001 && meanAngleREF1>=-0.001 && meanAngleREF1<=0.001)
// {
// cout<<"find it...iterating "<<iterNb<<" times."<<endl;
// break;
// }
// break;
if(iterNb==41) break;
}//while(1)
fout.close();
fout1.close();
fout2.close();
} // entire script
int main(int argc, char * argv[])
{
int width = 640;
int height = 480;
Resolution::getInstance(width, height);
Intrinsics::getInstance(528, 528, 320, 240);
cv::Mat intrinsicMatrix = cv::Mat(3,3,CV_64F);
intrinsicMatrix.at<double>(0,0) = Intrinsics::getInstance().fx();
intrinsicMatrix.at<double>(1,1) = Intrinsics::getInstance().fy();
intrinsicMatrix.at<double>(0,2) = Intrinsics::getInstance().cx();
intrinsicMatrix.at<double>(1,2) = Intrinsics::getInstance().cy();
intrinsicMatrix.at<double>(0,1) =0;
intrinsicMatrix.at<double>(1,0) =0;
intrinsicMatrix.at<double>(2,0) =0;
intrinsicMatrix.at<double>(2,1) =0;
intrinsicMatrix.at<double>(2,2) =1;
Bytef * decompressionBuffer = new Bytef[Resolution::getInstance().numPixels() * 2];
IplImage * deCompImage = 0;
std::string logFile="/home/lili/Kinect_Logs/2015-11-05.00.klg";
// assert(pcl::console::parse_argument(argc, argv, "-l", logFile) > 0 && "Please provide a log file");
RawLogReader logReader(decompressionBuffer,
deCompImage,
logFile,
true);
cv::Mat1b tmp(height, width);
cv::Mat3b depthImg(height, width);
PlaceRecognition placeRecognition(&intrinsicMatrix);
iSAMInterface iSAM;
//Keyframes
KeyframeMap map(true);
Eigen::Vector3f lastPlaceRecognitionTrans = Eigen::Vector3f::Zero();
Eigen::Matrix3f lastPlaceRecognitionRot = Eigen::Matrix3f::Identity();
int64_t lastTime = 0;
OdometryProvider * odom = 0;
//int frame_index = 0;
// uint64_t timestamp;
/*if(true)
{
odom = new FOVISOdometry;
if(logReader.hasMore())
{
logReader.getNext();
Eigen::Matrix3f Rcurr = Eigen::Matrix3f::Identity();
Eigen::Vector3f tcurr = Eigen::Vector3f::Zero();
odom->getIncrementalTransformation(tcurr,
Rcurr,
logReader.timestamp,
(unsigned char *)logReader.deCompImage->imageData,
(unsigned short *)&decompressionBuffer[0]);
}
}*/
//else
// {
odom = new DVOdometry;
if(logReader.hasMore())
{
logReader.getNext();
DVOdometry * dvo = static_cast<DVOdometry *>(odom);
dvo->firstRun((unsigned char *)logReader.deCompImage->imageData,
(unsigned short *)&decompressionBuffer[0]);
}
//}
ofstream fout1("camera_pose_DVOMarch28.txt");
ofstream fout2("camera_pose_KeyframeMotionMetric0.1March28.txt");
ofstream fout3("loop_closure_transformationMarch28.txt");
ofstream fout4("camera_pose_after_optimizationMarch28.txt");
ofstream fout5("camera_pose_after_optimizationMarch28DVOCov.txt");
ofstream fout6("camera_pose_after_optimizationMarch28DVOLoopTransCov.txt");
/*
pcl::visualization::PCLVisualizer cloudViewer;
cloudViewer.setBackgroundColor(1, 1, 1);
cloudViewer.initCameraParameters();
cloudViewer.addCoordinateSystem(0.1, 0, 0, 0);
*/
//pcl::visualization::PointCloudColorHandlerRGBField<pcl::PointXYZRGB> color(cloud->makeShared());
//cloudViewer.addPointCloud<pcl::PointXYZRGB>(cloud->makeShared(), color, "Cloud Viewer");
int loopClosureCount=0;
while(logReader.hasMore())
{
logReader.getNext();
cv::Mat3b rgbImg(height, width, (cv::Vec<unsigned char, 3> *)logReader.deCompImage->imageData);
cv::Mat1w depth(height, width, (unsigned short *)&decompressionBuffer[0]);
cv::normalize(depth, tmp, 0, 255, cv::NORM_MINMAX, 0);
cv::cvtColor(tmp, depthImg, CV_GRAY2RGB);
cv::imshow("RGB", rgbImg);
cv::imshow("Depth", depthImg);
char key = cv::waitKey(1);
if(key == 'q')
{
break;
}
else if(key == ' ')
{
key = cv::waitKey(0);
}
if(key == 'q')
{
break;
}
Eigen::Matrix3f Rcurr = Eigen::Matrix3f::Identity();
Eigen::Vector3f tcurr = Eigen::Vector3f::Zero();
// #1
odom->getIncrementalTransformation(tcurr,
Rcurr,
logReader.timestamp,
(unsigned char *)logReader.deCompImage->imageData,
(unsigned short *)&decompressionBuffer[0]);
fout1<<tcurr[0]<<" "<<tcurr[1]<<" "<<tcurr[2]<<" "<<Rcurr(0,0)<<" "<<Rcurr(0,1)<<" "<<Rcurr(0,2)<<" "<<Rcurr(1,0)<<" "<<Rcurr(1,1)<<" "<<Rcurr(1,2)<<" "<<Rcurr(2,0)<<" "<<Rcurr(2,1)<<" "<<Rcurr(2,2)<<endl;
Eigen::Matrix3f Rdelta = Rcurr.inverse() * lastPlaceRecognitionRot;
Eigen::Vector3f tdelta = tcurr - lastPlaceRecognitionTrans;
//Eigen::MatrixXd covariance = odom->getCovariance();
//Eigen::MatrixXd covariance=Eigen::Matrix<double, 6, 6>::Identity()* 1e-3;
if((Projection::rodrigues2(Rdelta).norm() + tdelta.norm()) >= 0.1)
{
Eigen::MatrixXd covariance = odom->getCovariance();
iSAM.addCameraCameraConstraint(lastTime,
logReader.timestamp,
lastPlaceRecognitionRot,
lastPlaceRecognitionTrans,
Rcurr,
tcurr);
//covariance);
printCovariance(fout5, covariance);
lastTime = logReader.timestamp;
lastPlaceRecognitionRot = Rcurr;
lastPlaceRecognitionTrans = tcurr;
cout<<"before add keyframe"<<endl;
// #2
map.addKeyframe((unsigned char *)logReader.deCompImage->imageData,
(unsigned short *)&decompressionBuffer[0],
Rcurr,
tcurr,
logReader.timestamp);
fout2<<tcurr[0]<<" "<<tcurr[1]<<" "<<tcurr[2]<<" "<<Rcurr(0,0)<<" "<<Rcurr(0,1)<<" "<<Rcurr(0,2)<<" "<<Rcurr(1,0)<<" "<<Rcurr(1,1)<<" "<<Rcurr(1,2)<<" "<<Rcurr(2,0)<<" "<<Rcurr(2,1)<<" "<<Rcurr(2,2)<<endl;
/*
//Save keyframe
{
cv::Mat3b rgbImgKeyframe(height, width, (cv::Vec<unsigned char, 3> *)logReader.deCompImage->imageData);
cv::Mat1w depthImgKeyframe(height, width, (unsigned short *)&decompressionBuffer[0]);
//save keyframe depth
char fileName[1024] = {NULL};
sprintf(fileName, "keyframe_depth_%06d.png", frame_index);
cv::imwrite(fileName, depthImgKeyframe);
//save keyframe rgb
sprintf(fileName, "keyframe_rgb_%06d.png", frame_index);
cv::imwrite(fileName, rgbImgKeyframe);
frame_index ++;
}
*/
int64_t matchTime;
Eigen::Matrix4d transformation;
// Eigen::MatrixXd cov(6,6);
//isam::Covariance(0.001 * Eigen::Matrix<double, 6, 6>::Identity()))
Eigen::MatrixXd cov=0.001 * Eigen::Matrix<double, 6, 6>::Identity();
cout<<"map.addKeyframe is OK"<<endl;
// #3
if(placeRecognition.detectLoop((unsigned char *)logReader.deCompImage->imageData,
(unsigned short *)&decompressionBuffer[0],
logReader.timestamp,
matchTime,
transformation,
cov,
loopClosureCount))
{
//printCovariance(fout6, cov);
cout<<"logReader.timestamp "<<logReader.timestamp<<endl;
cout<<"matchTime "<<matchTime<<endl;
/*
transformation << -0.2913457145219732, 0.228056050293173, -0.9290361201559172, 2.799184934345601,
0.6790194052589797, 0.7333821627861707, -0.03291277242681545, 1.310438143604587,
0.673832562222562, -0.6404225489719699, -0.3685222338703895, 6.988973505496276,
0, 0, 0, 0.999999999999998;
*/
/*
transformation << 0.9998996846969838, 0.003948215234314986, -0.01360265192291004, 0.05847011404293689,
-0.004032877285312574, 0.9999726343121815, -0.006202138950136233, 0.04528938486109094,
0.01357779229749574, 0.006256374606648019, 0.9998882444218992, 0.02203456132723125,
0, 0, 0, 1;
*/
iSAM.addLoopConstraint(logReader.timestamp, matchTime, transformation);//, cov);
fout3<<transformation(0,0)<<" "<<transformation(0,1)<<" "<<transformation(0,2)<<" "<<transformation(0,3)<<" "<<transformation(1,0)<<" "<<transformation(1,1)<<" "<<transformation(1,2)<<" "<<transformation(1,3)<<" "<<transformation(2,0)<<" "<<transformation(2,1)<<" "<<transformation(2,2)<<" "<<transformation(2,3)<<" "<<transformation(3,0)<<" "<<transformation(3,1)<<" "<<transformation(3,2)<<" "<<transformation(3,3)<<endl;
loopClosureCount++;
}
}
if(loopClosureCount>=1)
{
break;
}
}
/*
for(int i=0; i<loopClosureCount;i++)
{
iSAM.addLoopConstraint(placeRecognition.loopClosureConstraints.at(i)->time1,
placeRecognition.loopClosureConstraints.at(i)->time2,
placeRecognition.loopClosureConstraints.at(i)->constraint);
}*/
std::vector<std::pair<uint64_t, Eigen::Matrix4f> > posesBefore;
iSAM.getCameraPoses(posesBefore);
cout<<"It works good before optimization"<<endl;
// #4
double residual =iSAM.optimise();
cout<<"It works good after optimize and before map.applyPoses"<<endl;
// map.applyPoses(isam);
//cout<<"It works good before *cloud=map.getMap and after map.applyPoses(isam)"<<endl;
/*
pcl::PointCloud<pcl::PointXYZRGB> *cloud = map.getMap();
// Write it back to disk under a different name.
// Another possibility would be "savePCDFileBinary()".
cout<<"before storing the point cloud map"<<endl;
pcl::io::savePCDFileASCII ("outputCloudMap03DVODensity005.pcd", *cloud);
cout << "Saved data points to outputMap.pcd." << std::endl;
cout<<"copy data into octomap..."<<endl;
octomap::ColorOcTree tree( 0.05 );
for (size_t i=0; i<(*cloud).points.size(); i++)
{
// 将点云里的点插入到octomap中
tree.updateNode( octomap::point3d((*cloud).points[i].x, (*cloud).points[i].y, (*cloud).points[i].z), true );
}
for (size_t i=0; i<(*cloud).points.size(); i++)
{
tree.integrateNodeColor( (*cloud).points[i].x, (*cloud).points[i].y, (*cloud).points[i].z, (*cloud).points[i].r, (*cloud).points[i].g, (*cloud).points[i].b);
}
tree.updateInnerOccupancy();
tree.write("OctomapColorLab03DVODensity005.ot");
cout<<"please see the done."<<endl;
*/
//pcl::visualization::PCLVisualizer cloudViewer;
// cloudViewer.setBackgroundColor(1, 1, 1);
//cloudViewer.initCameraParameters();
// cloudViewer.addCoordinateSystem(0.1, 0, 0, 0);
//pcl::visualization::PointCloudColorHandlerRGBField<pcl::PointXYZRGB> color(cloud->makeShared());
//cloudViewer.addPointCloud<pcl::PointXYZRGB>(cloud->makeShared(), color, "Cloud Viewer");
std::vector<std::pair<uint64_t, Eigen::Matrix4f> > newPoseGraph;
iSAM.getCameraPoses(newPoseGraph);
/*
for(unsigned int i = 0; i < newPoseGraph.size(); i++)
{
// file << std::setprecision(6) << std::fixed << (double)newPoseGraph.at(i).first / 1000000.0 << " ";
Eigen::Vector3f trans = newPoseGraph.at(i).second.topRightCorner(3, 1);
Eigen::Matrix3f rot = newPoseGraph.at(i).second.topLeftCorner(3, 3);
fout4 << trans(0) << " " << trans(1) << " " << trans(2) << " ";
Eigen::Quaternionf currentCameraRotation(rot);
//file << currentCameraRotation.x() << " " << currentCameraRotation.y() << " " << currentCameraRotation.z() << " " << currentCameraRotation.w() << "\n";
}*/
for(std::vector<std::pair<uint64_t, Eigen::Matrix4f> >::iterator ite=newPoseGraph.begin(); ite!=newPoseGraph.end(); ite++)
{
Eigen::Matrix3f Roptimized;
Roptimized<<ite->second(0,0), ite->second(0,1), ite->second(0,2),
ite->second(1,0), ite->second(1,1), ite->second(1,2),
ite->second(2,0), ite->second(2,1), ite->second(2,2);
Eigen::Quaternionf quatOptimized(Roptimized);
fout4<<ite->second(0,3)<<" "<<ite->second(1,3)<<" "<<ite->second(2,3)<<" "<<quatOptimized.w()<<" "<<quatOptimized.x()<<" "<<quatOptimized.y()<<" "<<quatOptimized.z()<<endl;
}
cout<<"The number of optimized poses"<<newPoseGraph.size()<<endl;
// drawPoses(poses, cloudViewer, 1.0, 0, 0);
//drawPoses(posesBefore, cloudViewer, 0, 0, 1.0);
//cloudViewer.spin();
delete [] decompressionBuffer;
return 0;
}