std::shared_ptr<Carta::Lib::RegionInfo> Region::getInfo() const {
std::shared_ptr<Carta::Lib::RegionInfo> info( new Carta::Lib::RegionInfo() );
info->setRegionType( getRegionType() );
int cornerCount = m_state.getArraySize( CORNERS );
std::vector< std::pair<double,double> > corners( cornerCount );
for( int i = 0; i < cornerCount; i++ ){
QString eleLookup = Carta::State::UtilState::getLookup( CORNERS, i );
QString xLookup = Carta::State::UtilState::getLookup( eleLookup, Util::XCOORD );
QString yLookup = Carta::State::UtilState::getLookup( eleLookup, Util::YCOORD );
double xValue = m_state.getValue<double>( xLookup );
double yValue = m_state.getValue<double>( yLookup );
corners[i] = std::pair<double,double>( xValue, yValue );
}
info->setCorners( corners );
return info;
}
bool UniPAX::RnaRegionReference::update(PersistenceManager& manager)
{
// check single pointer if object was merged
if (manager.isMerged(getRegionType()))
{
setRegionType(boost::dynamic_pointer_cast<SequenceRegionVocabulary>(manager.getMergedObject(getRegionType())));
}
if (manager.isMerged(getOrganism()))
{
setOrganism(boost::dynamic_pointer_cast<BioSource>(manager.getMergedObject(getOrganism())));
}
if (manager.isMerged(getAbsoluteRegion()))
{
setAbsoluteRegion(boost::dynamic_pointer_cast<SequenceLocation>(manager.getMergedObject(getAbsoluteRegion())));
}
if (manager.isMerged(getSubRegion()))
{
setSubRegion(boost::dynamic_pointer_cast<EntityReference>(manager.getMergedObject(getSubRegion())));
}
return UniPAX::EntityReference::update(manager);
}