int getTotalMMAmongAllMappings(const pairVector &mappings) {
int totalMM = 0;
// compute the total number of mismatches among all of the mappings
pairVector::const_iterator mapIter = mappings.begin();
pairVector::const_iterator mapEnd = mappings.end();
for (; mapIter != mapEnd; ++mapIter)
totalMM += getTotalMM(*mapIter);
return totalMM;
}
bool byTotalMM(const PAIR &a, const PAIR &b) {
return (getTotalMM(a) < getTotalMM(b));
}
