static void gfs_skew_symmetric_run (GfsSimulation * sim)
{
GfsVariable * p, * res = NULL, * gmac[FTT_DIMENSION];
GfsDomain * domain;
GSList * i;
domain = GFS_DOMAIN (sim);
p = gfs_variable_from_name (domain->variables, "P");
g_assert (p);
FttComponent c;
for (c = 0; c < FTT_DIMENSION; c++)
gmac[c] = gfs_temporary_variable (domain);
gfs_variable_set_vector (gmac, FTT_DIMENSION);
gfs_simulation_refine (sim);
gfs_simulation_init (sim);
i = domain->variables;
while (i) {
if (GFS_IS_VARIABLE_RESIDUAL (i->data))
res = i->data;
i = i->next;
}
gfs_simulation_set_timestep (sim);
GfsVariable ** u = gfs_domain_velocity (domain);
GfsVariable ** velfaces = GFS_SKEW_SYMMETRIC(sim)->velfaces;
GfsVariable ** velold = GFS_SKEW_SYMMETRIC(sim)->velold;
FaceData fd = { velfaces, velold, u, p, &sim->advection_params.dt, GFS_SKEW_SYMMETRIC(sim)->beta};
if (sim->time.i == 0) {
gfs_domain_cell_traverse (domain,
FTT_PRE_ORDER, FTT_TRAVERSE_LEAFS, -1,
(FttCellTraverseFunc) reset_unold, &fd);
gfs_domain_cell_traverse (domain,
FTT_PRE_ORDER, FTT_TRAVERSE_LEAFS, -1,
(FttCellTraverseFunc) get_face_values, &fd);
gfs_mac_projection (domain,
&sim->projection_params,
sim->advection_params.dt/2.,
p, sim->physical_params.alpha, gmac, NULL);
gfs_domain_cell_traverse (domain,
FTT_PRE_ORDER, FTT_TRAVERSE_LEAFS, -1,
(FttCellTraverseFunc) get_velfaces, &fd);
gfs_domain_cell_traverse (domain,
FTT_PRE_ORDER, FTT_TRAVERSE_LEAFS, -1,
(FttCellTraverseFunc) initialize_unold, &fd);
}
while (sim->time.t < sim->time.end && sim->time.i < sim->time.iend) {
gdouble tstart = gfs_clock_elapsed (domain->timer);
gts_container_foreach (GTS_CONTAINER (sim->events), (GtsFunc) gfs_event_do, sim);
gfs_skew_symmetric_momentum (sim, &fd, gmac);
gfs_mac_projection (domain,
&sim->projection_params,
sim->advection_params.dt/2.,
p, sim->physical_params.alpha, gmac, NULL);
gfs_domain_cell_traverse (domain,
FTT_PRE_ORDER, FTT_TRAVERSE_LEAFS, -1,
(FttCellTraverseFunc) correct_face_velocity, NULL);
gts_container_foreach (GTS_CONTAINER (sim->events), (GtsFunc) gfs_event_half_do, sim);
gfs_domain_cell_traverse (domain,
FTT_PRE_ORDER, FTT_TRAVERSE_LEAFS, -1,
(FttCellTraverseFunc) get_velfaces, &fd);
gfs_domain_cell_traverse (domain,
FTT_PRE_ORDER, FTT_TRAVERSE_LEAFS, -1,
(FttCellTraverseFunc) get_cell_values, &fd);
gfs_domain_cell_traverse (domain,
FTT_POST_ORDER, FTT_TRAVERSE_NON_LEAFS, -1,
(FttCellTraverseFunc) gfs_cell_coarse_init, domain);
gfs_simulation_adapt (sim);
sim->time.t = sim->tnext;
sim->time.i++;
gfs_simulation_set_timestep (sim);
gfs_advance_tracers (sim, sim->advection_params.dt);
gts_range_add_value (&domain->timestep, gfs_clock_elapsed (domain->timer) - tstart);
gts_range_update (&domain->timestep);
gts_range_add_value (&domain->size, gfs_domain_size (domain, FTT_TRAVERSE_LEAFS, -1));
gts_range_update (&domain->size);
}
gts_container_foreach (GTS_CONTAINER (sim->events), (GtsFunc) gfs_event_do, sim);
gts_container_foreach (GTS_CONTAINER (sim->events), (GtsFunc) gts_object_destroy, NULL);
for (c = 0; c < FTT_DIMENSION; c++)
gts_object_destroy (GTS_OBJECT (gmac[c]));
}
static void wave_run (GfsSimulation * sim)
{
GfsDomain * domain = GFS_DOMAIN (sim);
GfsWave * wave = GFS_WAVE (sim);
SolidFluxParams par;
par.div = gfs_variable_from_name (domain->variables, "P");
g_assert (par.div);
par.p = &sim->advection_params;
par.fv = gfs_temporary_variable (domain);
gfs_simulation_refine (sim);
gfs_simulation_init (sim);
while (sim->time.t < sim->time.end &&
sim->time.i < sim->time.iend) {
gdouble tstart = gfs_clock_elapsed (domain->timer);
gts_container_foreach (GTS_CONTAINER (sim->events), (GtsFunc) gfs_event_do, sim);
/* get global timestep */
gfs_domain_face_traverse (domain, FTT_XYZ,
FTT_PRE_ORDER, FTT_TRAVERSE_LEAFS, -1,
(FttFaceTraverseFunc) gfs_face_reset_normal_velocity, NULL);
gfs_simulation_set_timestep (sim);
gdouble dt = sim->advection_params.dt;
gdouble g = sim->physical_params.g/sim->physical_params.L;
gdouble tnext = sim->tnext;
/* spatial advection */
guint ik, ith;
for (ik = 0; ik < wave->nk; ik++) {
FttVector cg;
group_velocity (ik, 0, &cg, wave->ntheta, g);
gfs_domain_face_traverse (domain, FTT_XYZ,
FTT_PRE_ORDER, FTT_TRAVERSE_LEAFS, -1,
(FttFaceTraverseFunc) set_group_velocity, &cg);
if (wave->alpha_s > 0.) {
/* stability criterion for GSE diffusion */
gdouble cfl = sim->advection_params.cfl;
sim->advection_params.cfl = MIN (cfl, 2./(4.*wave->alpha_s*M_PI/wave->ntheta));
/* fixme: this should be:
sim->advection_params.cfl = MIN (cfl, sqrt(3.)/(wave->alpha_s*2.*M_PI/wave->ntheta));
*/
gfs_simulation_set_timestep (sim);
sim->advection_params.cfl = cfl;
}
else
gfs_simulation_set_timestep (sim);
/* subcycling */
guint n = rint (dt/sim->advection_params.dt);
g_assert (fabs (sim->time.t + sim->advection_params.dt*n - tnext) < 1e-12);
while (n--) {
for (ith = 0; ith < wave->ntheta; ith++) {
FttVector cg;
group_velocity (ik, ith, &cg, wave->ntheta, g);
gfs_domain_face_traverse (domain, FTT_XYZ,
FTT_PRE_ORDER, FTT_TRAVERSE_LEAFS, -1,
(FttFaceTraverseFunc) set_group_velocity, &cg);
GfsVariable * t = GFS_WAVE (sim)->F[ik][ith];
sim->advection_params.v = t;
gfs_domain_traverse_leaves (domain, (FttCellTraverseFunc) solid_flux, &par);
gfs_tracer_advection_diffusion (domain, &sim->advection_params, NULL);
sim->advection_params.fv = par.fv;
gfs_domain_traverse_merged (domain, (GfsMergedTraverseFunc) gfs_advection_update,
&sim->advection_params);
if (wave->alpha_s > 0.)
gse_alleviation_diffusion (domain, t, &cg, sim->advection_params.dt);
gfs_domain_bc (domain, FTT_TRAVERSE_LEAFS, -1, t);
gfs_domain_cell_traverse (domain,
FTT_POST_ORDER, FTT_TRAVERSE_NON_LEAFS, -1,
(FttCellTraverseFunc) t->fine_coarse, t);
}
gts_container_foreach (GTS_CONTAINER (sim->events), (GtsFunc) redo_some_events, sim);
gfs_simulation_adapt (sim);
}
}
sim->advection_params.dt = dt;
/* source terms */
if (wave->source)
(* wave->source) (wave);
sim->time.t = sim->tnext = tnext;
sim->time.i++;
gts_range_add_value (&domain->timestep, gfs_clock_elapsed (domain->timer) - tstart);
gts_range_update (&domain->timestep);
gts_range_add_value (&domain->size, gfs_domain_size (domain, FTT_TRAVERSE_LEAFS, -1));
gts_range_update (&domain->size);
}
gts_container_foreach (GTS_CONTAINER (sim->events), (GtsFunc) gfs_event_do, sim);
gts_container_foreach (GTS_CONTAINER (sim->events), (GtsFunc) gts_object_destroy, NULL);
gts_object_destroy (GTS_OBJECT (par.fv));
}
static void gfs_porous_run (GfsSimulation * sim)
{
GfsVariable * p, * pmac, * res = NULL, * g[FTT_DIMENSION], * gmac[FTT_DIMENSION];
GfsVariable ** gc = sim->advection_params.gc ? g : NULL;
GfsDomain * domain;
GfsPorous *por;
GSList * i;
domain = GFS_DOMAIN (sim);
por = GFS_POROUS (sim);
p = gfs_variable_from_name (domain->variables, "P");
g_assert (p);
pmac = gfs_variable_from_name (domain->variables, "Pmac");
g_assert (pmac);
FttComponent c;
for (c = 0; c < FTT_DIMENSION; c++) {
gmac[c] = gfs_temporary_variable (domain);
if (sim->advection_params.gc)
g[c] = gfs_temporary_variable (domain);
else
g[c] = gmac[c];
}
gfs_variable_set_vector (gmac, FTT_DIMENSION);
gfs_variable_set_vector (g, FTT_DIMENSION);
gfs_simulation_refine (sim);
gfs_simulation_init (sim);
i = domain->variables;
while (i) {
if (GFS_IS_VARIABLE_RESIDUAL (i->data))
res = i->data;
i = i->next;
}
gfs_simulation_set_timestep (sim);
if (sim->time.i == 0) {
/*inserted changes inside this function*/
gfs_approximate_projection_por (domain, por,
&sim->approx_projection_params,
sim->advection_params.dt,
p, sim->physical_params.alpha, res, g, NULL);
gfs_simulation_set_timestep (sim);
gfs_advance_tracers (sim, sim->advection_params.dt/2.);
}
else if (sim->advection_params.gc)
gfs_update_gradients_por (domain, por, p, sim->physical_params.alpha, g);
while (sim->time.t < sim->time.end &&
sim->time.i < sim->time.iend) {
gdouble tstart = gfs_clock_elapsed (domain->timer);
gts_container_foreach (GTS_CONTAINER (sim->events), (GtsFunc) gfs_event_do, sim);
/*inserted changes */
gfs_pre_projection (domain, por, FTT_DIMENSION);
if (sim->advection_params.linear) {
/* linearised advection */
gfs_domain_face_traverse (domain, FTT_XYZ,
FTT_PRE_ORDER, FTT_TRAVERSE_LEAFS, -1,
(FttFaceTraverseFunc) gfs_face_reset_normal_velocity, NULL);
gfs_domain_face_traverse (domain, FTT_XYZ,
FTT_PRE_ORDER, FTT_TRAVERSE_LEAFS, -1,
(FttFaceTraverseFunc) gfs_face_interpolated_normal_velocity,
sim->u0);
}
else
gfs_predicted_face_velocities (domain, FTT_DIMENSION, &sim->advection_params);
gfs_variables_swap (p, pmac);
gfs_mac_projection_por (domain, por,
&sim->projection_params,
sim->advection_params.dt/2.,
p, sim->physical_params.alpha, gmac, NULL);
gfs_variables_swap (p, pmac);
gts_container_foreach (GTS_CONTAINER (sim->events), (GtsFunc) gfs_event_half_do, sim);
gfs_centered_velocity_advection_diffusion (domain,
FTT_DIMENSION,
&sim->advection_params,
gmac,
sim->time.i > 0 || !gc ? gc : gmac,
sim->physical_params.alpha);
if (gc) {
gfs_source_darcy_implicit (domain, sim->advection_params.dt);
gfs_correct_centered_velocities (domain, FTT_DIMENSION, sim->time.i > 0 ? gc : gmac,
-sim->advection_params.dt);
/*inserted changes*/
gfs_post_projection (domain, por, FTT_DIMENSION);
}
else if (gfs_has_source_coriolis (domain)) {
gfs_correct_centered_velocities (domain, FTT_DIMENSION, gmac, sim->advection_params.dt);
gfs_source_darcy_implicit (domain, sim->advection_params.dt);
gfs_correct_centered_velocities (domain, FTT_DIMENSION, gmac, -sim->advection_params.dt);
/*inserted changes*/
gfs_post_projection (domain, por, FTT_DIMENSION);
}
gfs_domain_cell_traverse (domain,
FTT_POST_ORDER, FTT_TRAVERSE_NON_LEAFS, -1,
(FttCellTraverseFunc) gfs_cell_coarse_init, domain);
gfs_simulation_adapt (sim);
/*inserted changes */
gfs_approximate_projection_por (domain, por,
&sim->approx_projection_params,
sim->advection_params.dt,
p, sim->physical_params.alpha, res, g, NULL);
/*inserted changes */
sim->time.t = sim->tnext;
sim->time.i++;
gfs_simulation_set_timestep (sim);
gfs_advance_tracers (sim, sim->advection_params.dt);
gts_range_add_value (&domain->timestep, gfs_clock_elapsed (domain->timer) - tstart);
gts_range_update (&domain->timestep);
gts_range_add_value (&domain->size, gfs_domain_size (domain, FTT_TRAVERSE_LEAFS, -1));
gts_range_update (&domain->size);
}
gts_container_foreach (GTS_CONTAINER (sim->events), (GtsFunc) gfs_event_do, sim);
gts_container_foreach (GTS_CONTAINER (sim->events), (GtsFunc) gts_object_destroy, NULL);
for (c = 0; c < FTT_DIMENSION; c++) {
gts_object_destroy (GTS_OBJECT (gmac[c]));
if (sim->advection_params.gc)
gts_object_destroy (GTS_OBJECT (g[c]));
}
}