bool ContextBase::parseCmdArgs(int argc, char **argv, int skipFirstArgs) {
_argc = argc;
_argv = argv;
_skipFirstArgs = skipFirstArgs;
if (_argc < 2) {
setShowHelp(true);
return false;
}
setProgram(_programNames[argv[0]]);
_argsProcessed.resize(_argc - _skipFirstArgs, false);
for (_i=_skipFirstArgs; _i < argc; _i++) {
if (isUsed(_i - _skipFirstArgs)) {
continue;
}
if (strcmp(_argv[_i], "-i") == 0) {
if (!handle_i()) return false;
}
else if (strcmp(_argv[_i], "-g") == 0) {
if (!handle_g()) return false;
}
else if ((strcmp(_argv[_i], "-h") == 0) || (strcmp(_argv[_i], "--help") == 0)) {
if (!handle_h()) return false;
}
else if (strcmp(_argv[_i], "-split") == 0) {
if (!handle_split()) return false;
}
else if (strcmp(_argv[_i], "-bed") == 0) {
if (!handle_bed()) return false;
}
else if (strcmp(_argv[_i], "-ubam") == 0) {
if (!handle_ubam()) return false;
}
else if (strcmp(_argv[_i], "-fbam") == 0) {
if (!handle_fbam()) return false;
}
else if(strcmp(_argv[_i], "-sorted") == 0) {
if (!handle_sorted()) return false;
}
else if (strcmp(_argv[_i], "-nobuf") == 0) {
if (!handle_nobuf()) return false;
}
else if (strcmp(_argv[_i], "-header") == 0) {
if (!handle_header()) return false;
}
else if (strcmp(_argv[_i], "-n") == 0) {
if (!handle_n()) return false;
}
else if (strcmp(_argv[_i], "-seed") == 0) {
if (!handle_seed()) return false;
}
}
return true;
}
bool ContextBase::parseCmdArgs(int argc, char **argv, int skipFirstArgs) {
for (_i=_skipFirstArgs; _i < argc; _i++) {
if (isUsed(_i - _skipFirstArgs)) {
continue;
}
if (strcmp(_argv[_i], "-i") == 0) {
if (!handle_i()) return false;
}
else if (strcmp(_argv[_i], "-g") == 0) {
if (!handle_g()) return false;
}
else if ((strcmp(_argv[_i], "-h") == 0) || (strcmp(_argv[_i], "--help") == 0)) {
if (!handle_h()) return false;
}
else if (strcmp(_argv[_i], "-split") == 0) {
if (!handle_split()) return false;
}
else if (strcmp(_argv[_i], "-bed") == 0) {
if (!handle_bed()) return false;
}
else if (strcmp(_argv[_i], "-ubam") == 0) {
if (!handle_ubam()) return false;
}
else if (strcmp(_argv[_i], "-fbam") == 0) {
if (!handle_fbam()) return false;
}
else if(strcmp(_argv[_i], "-sorted") == 0) {
if (!handle_sorted()) return false;
}
else if (strcmp(_argv[_i], "-nobuf") == 0) {
if (!handle_nobuf()) return false;
}
else if (strcmp(_argv[_i], "-iobuf") == 0) {
if (!handle_iobuf()) return false;
}
else if (strcmp(_argv[_i], "-prec") == 0) {
if (!handle_prec()) return false;
}
else if (strcmp(_argv[_i], "-header") == 0) {
if (!handle_header()) return false;
}
else if (strcmp(_argv[_i], "-n") == 0) {
if (!handle_n()) return false;
}
else if (strcmp(_argv[_i], "-seed") == 0) {
if (!handle_seed()) return false;
}
else if ((strcmp(_argv[_i], "-o") == 0) || (strcmp(_argv[_i], "-ops") == 0)) {
if (!handle_o()) return false;
}
else if ((strcmp(_argv[_i], "-c") == 0) || (strcmp(_argv[_i], "-opCols") == 0)) {
if (!handle_c()) return false;
}
else if (strcmp(_argv[_i], "-null") == 0) {
if (!handle_null()) return false;
}
else if (strcmp(_argv[_i], "-delim") == 0) {
if (!handle_delim()) return false;
}
else if (strcmp(_argv[_i], "-sortout") == 0) {
if (!handle_sortout()) return false;
}
else if (strcmp(_argv[_i], "-nonamecheck") == 0) {
if (!handle_nonamecheck()) return false;
}
}
return true;
}