예제 #1
0
파일: hfile.c 프로젝트: Illumina/akt
static hFILE *hopen_mem(const char *url, const char *mode)
{
    size_t length, size;
    char *buffer;
    const char *data, *comma = strchr(url, ',');
    if (comma == NULL) { errno = EINVAL; return NULL; }
    data = comma+1;

    // TODO Implement write modes
    if (strchr(mode, 'r') == NULL) { errno = EROFS; return NULL; }

    if (comma - url >= 7 && cmp_prefix(";base64", &comma[-7]) == 0) {
        size = hts_base64_decoded_length(strlen(data));
        buffer = malloc(size);
        if (buffer == NULL) return NULL;
        hts_decode_base64(buffer, &length, data);
    }
    else {
        size = strlen(data) + 1;
        buffer = malloc(size);
        if (buffer == NULL) return NULL;
        hts_decode_percent(buffer, &length, data);
    }

    hFILE_mem *fp = (hFILE_mem *)
        hfile_init_fixed(sizeof (hFILE_mem), mode, buffer, length, size);
    if (fp == NULL) { free(buffer); return NULL; }

    fp->base.backend = &mem_backend;
    return &fp->base;
}
예제 #2
0
파일: hfile.c 프로젝트: arq5x/bedtools2
static hFILE *create_hfile_mem(char* buffer, const char* mode, size_t buf_filled, size_t buf_size)
{
    hFILE_mem *fp = (hFILE_mem *) hfile_init_fixed(sizeof(hFILE_mem), mode, buffer, buf_filled, buf_size);
    if (fp == NULL)
        return NULL;

    fp->base.backend = &mem_backend;
    return &fp->base;
}
예제 #3
0
파일: hfile.c 프로젝트: arq5x/bedtools2
// Loads the contents of filename to produced a read-only, in memory,
// immobile hfile.  fp is the already opened file.  We always close this
// input fp, irrespective of whether we error or whether we return a new
// immobile hfile.
static hFILE *hpreload(hFILE *fp) {
    hFILE *mem_fp;
    char *buf = NULL;
    off_t buf_sz = 0, buf_a = 0, buf_inc = 8192, len;

    for (;;) {
        if (buf_a - buf_sz < 5000) {
            buf_a += buf_inc;
            char *t = realloc(buf, buf_a);
            if (!t) goto err;
            buf = t;
            if (buf_inc < 1000000) buf_inc *= 1.3;
        }
        len = hread(fp, buf+buf_sz, buf_a-buf_sz);
        if (len > 0)
            buf_sz += len;
        else
            break;
    }

    if (len < 0) goto err;
    mem_fp = hfile_init_fixed(sizeof(hFILE), "r", buf, buf_sz, buf_a);
    if (!mem_fp) goto err;
    mem_fp->backend = &mem_backend;

    if (hclose(fp) < 0) {
        hclose_abruptly(mem_fp);
        goto err;
    }
    return mem_fp;

 err:
    free(buf);
    hclose_abruptly(fp);
    return NULL;
}