/**
* Initialize the FASTQ module using a pipe.
* @post fastq_nextSequence(), fastq_readAllSequences() can be called.
*/
void fastq_initFromPipe (char* command)
{
lsFastq = ls_createFromPipe (command);
ls_bufferSet (lsFastq,1);
}
/**
* Initialize the blastParser module from pipe.
* @param[in] command Command to be executed
*/
void blastParser_initFromPipe (char* command)
{
ls = ls_createFromPipe (command);
ls_bufferSet (ls,1);
}
/**
* Initialize the FASTQ module using a file name.
* @note Use "-" to denote stdin.
* @post fastq_nextSequence(), fastq_readAllSequences() can be called.
*/
void fastq_initFromFile (char* fileName)
{
lsFastq = ls_createFromFile (fileName);
ls_bufferSet (lsFastq,1);
}
/**
* Initialize the blastParser module from file.
* @param[in] fileName File name, use "-" to denote stdin
*/
void blastParser_initFromFile (char* fileName)
{
ls = ls_createFromFile (fileName);
ls_bufferSet (ls,1);
}
